Light signal transduction in plants

Photochemistry and Photobiology

Volumn 64, Issue 6, 1996, Pages 897-905

  Staub, Jeffrey M ^a   Deng, Xing Wang ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0030453966     PISSN: 00318655     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1751-1097.1996.tb01853.x     Document Type: Review

References (109)

1. Bowler, C. and N-H, Chua (1994) Emerging themes of plant signal transduction. Plant Cell 6, 1529-1541.
2. Deng, X.-W. (1994) Fresh view of light signal transduction in plants. Cell 76, 423-426.
3. Chory, J., R. K. Cook, R. Dixon, T. Elich, H. M. Li, E. Lopez, N. Mochizuki, P. Nagpal, A. Pepper and D. Poole (1995) Signal-transduction pathways controlling light-regulated development in Arabidopxis. Phil. Trans. R. Soc. Lond. B 350, 59-65.
4. McNellis, T. W, and X.-W, Deng (1995) Light control of seedling morphogenetic pattern. Plant Cell 7, 1749-1761.
5. Quail, P, H., M. T. Boylan, B. M. Parks, T. W. Short, Y. Xu and D. Wagner (1995) Phytochromes: photosensory perception and signal transduction. Science 268, 675-680.
6. von Arnim, A. G. and X.-W, Deng (1996) Light control of seedling development. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47, 215-243.
7. Clack, T., S. Mathews and R. A. Sharrock (1994) The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE. Plant Mol. Biol. 25, 413-427.
8. Sharrock, R. A. and P. H. Quail (1989) Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family. Genes & Dev. 3, 1745-1757.
9. Lagarias, J. C. and D. M, Lagarias (1989) Self-assembly of synthetic phytochrome holoprotein in vitro. Proc. Natl. Acad. Sci. USA 86, 5778-5780.
10. Quail, P. H. (1991). Phytochrome: a light-activated molecular switch that regulates plant gene expression. Annu. Rev. Genet. 25, 389-409.
11. Edgerton, M. D. and A. M. Jones (1992) Localization of protein-protein interactions between subunits of phytochrome. Plant Cell 4, 161-171.
12. Edgerton, M. D. and A. M Jones (1993) Subunit interactions in the carboxy-terminal domain of phytochrome, Biochemistry 32, 8239-82433.
13. Cherry, J. R., D. Hondred, J. M. Walker, J. M. Keller, H. P. Hershey and R. D. Vierstra (1993) Carboxy-terminal deletion analysis of oat phytochrome A reveals the presence of separate domains required for structure and biological activity. Plant Cell 5, 565-575.
14. McCormac, A. C., D. Wagner. M. T. Boylan, P. H. Quail, H. Smith and G. C. Whitelam (1993) Photoresponses of transgenic Arabidopsis seedlings expressing introduced phytochrome B-encoding cDNAs: evidence that phytochrome A and phytochrome B have distinct photoregulatory functions. Plant J. 4, 19-27.
15. Whitelam, G. C., E. Johnson, J. Peng, P. Carol, M. L. Anderson, J. S. Cowl and N. P. Harberd (1993) Phytochrome A null mutants of Arabidopsis display a wild-type phenotype in white light. Plant Cell 5, 757-768.
16. Reed, J. W., A. Nagalani, T. D. Elich, M. Fagan and J. Chory (1994) Phylochrome A and phytochrome B have overlapping but distinct functions in Arabidopsis development. Plant Physiol. 104, 1139-1149.
17. Whitelam, G. C. and N. P. Harberd (1994) Action and function of phytochrome family members revealed through the study of mutant and transgenic plants. Plant Cell Environ. 17, 615-625.
18. Smith, H. (1995) Physiological and ecological function within the phytochrome family. Annu. Rev. Plant Physiol. Plant Mol. Biol. 46, 289-315.
19. McCurdy, D. W. and L. H. Pratt (1986) Kinetics of intracellular redistribution of phytochrome in Avena coleoptiles after its photoconversion to the active, far-red-absorbing form. Planta 167, 330-336.
20. Nagatani, A. and K. Sakamoto (1996) Light-dependent nuclear localization of phytochrome B. The Japan-United States Binational Workshop; May 13, 14; Tsukuba, Ibaraki 305 Japan. [Abstract]
21. Thummler, F., M. Dufner, P. Kreisl and P. Dittrich (1992) Molecular cloning of a novel phytochrome gene of the moss Ceratodon purpureus which encodes a putative light-regulated protein kinase. Plant Mol. Biol. 20, 1003-1017.
22. Algarra, P., S. Linder and F. Thummler (1993) Biochemical evidence that phytochrome of the moss Ceratodon purpureus is a light-regulated protein kinase. FEBS Lett. 315, 69-73.
23. Thummler, F., P. Algarra and G. M. Fobo (1995) Sequence similarities of phytochrome to protein kinases: implication for the structure, function and evolution of the phytochrome gene family. FEBS Lett. 357, 149-155.
24. Griffith, G. W., G. I. Jenkins, E. J. Milner-White and A. J. Clutterbuck (1994) Homology at the amino acid level between plant phytochromes and a regulator of asexual sporulation in Emericella (=Aspergillus) nidulans. Phatochem. Photobiol. 59, 252-256.
25. Boylan, M. T. and P. H. Quail (1989). Oat phytochrome A is biologically active in transgenic tomatoes. Plant Cell 1, 765-763.
26. Boylan, M. T. and P. H. Quail (1991). Phytochrome A over-expression inhibits hypocotyl elongation in transgenic Arabidopsis. Proc. Natl. Acad. Sci. USA 88, 10806-10810.
27. Wagner, D., J. M. Tepperman and P. H. Quail (1991) Over-expression of phytochrome B induces a short hypocotyl phenolype in transgenic Arabidopsis. Plant Cell 3, 1275-1288.
28. Cherry, J. R., D. Hondred, J. M. Walker and R. D. Vierstra (1992) Phytochrome requires the 6-kDa N-terminal domain for full biological activity. Proc. Natl. Acad. Sci. USA 89, 5039-5043.
29. Boylan, M., N. Douglas and P. H. Quail (1994) Dominant negative suppression of Arabidopsis photoresponses by mutant phytochrome A sequences identifies spatially discrete regulatory domain in the photoreceptor. Plant Cell 6, 449-160.
30. Jordan, E. T., J. R. Cherry, J. M. Walker and R. D. Vierstra (1995) The amino-terminus of phytochrome A contains two distinct functional domains. Plant J. 9, 243-257.
31. Jordan, E. T., P. M. Hatfield, D. Hondred, M. Talon, J. A. D. Zeevaart and R. D. Vierstra (1995) Phytochrome A overexpression in transgenic tobacco. Plant Physiol. 107, 797-805.
32. Wagner, D. and P. H. Quail (1995) Mutational analysis of phytochrome B identifies a small COOH-terminal-domain region critical for regulatory activity. Proc. Natl. Acad. Sci. USA 92, 8596-8600.
33. Xu, Y., B. M. Parks, T. W. Short and P. H. Quail (1995) Missense mutations define a restricted segment in the C-terminal domain of phytochrome A critical to its regulatory activity. Plant Cell 7, 1433-1443.
34. Li, L. and J. C. Lagarias (1994) Phytochrome assembly in living cells of the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 91, 12535-12539.
35. Evangelista, C., D. Lockshon and S. Fields (1996) The yeast two-hybrid system: prospects for protein linkage maps. Trends Cell Biol. 6, 196-199.
36. Koornneef, M., E. Rolff and C. Pruitt (1980) Genetic control of light-inhibited hypocotyl elongation in Arabidopsis thaliana (L.) Heyhn. Z. Pflanzenphysiol. 100, 147-160.
37. Ahmad, M. and A. R. Cashmore (1993) HY4 gene of A. thal-iana encodes a protein with characteristics of a blue-light photoreceptor. Nature 366, 162-166.
38. Todo, T., H. Ryo, K. Yamamoto, H. Toh, T. Inui, H. Ayaki, T. Nomura and M. Ikenaga (1996) Similarity among the Drosophila (6-4) photolyase, a human photolyase homologue, and the DNA photolyase-blue-light photoreceptor family. Science 272, 109-112.
39. Sancar, A. (1994) Structure and function of DNA photolyase. Biochemistry 33, 2-9.
40. Malhotra, K., S.-T. Kim, A. Batschauer, L. Dawut and A. Sancar (1995) Putative blue-light photoreceptors from Arabidopsis thaliana and Sinapsis alba with a high degree of sequence homology to DNA photolyase contain the two photolyase cofactors but lack DNA repair activity. Biochemistry 34, 6892-6899.
41. Lin, C. T., D. E. Robertson, M. Ahmad, A. A. Raibekas, S. M. Jorns, P. L. Dutton and A. R. Cashmore (1995) Association of flavin adenine dinucleotide with the Arabidopsis blue-light receptor CRY1. Science 269, 968-970.
42. Lin, C. T., M. Ahmad, D. Gordon and A. R. Cashmore (1995) Expression of an Arabidopsis cryptochrome gene in transgenic tobacco results in hypersensitivity to blue, UV-A, and green light. Proc. Natl. Acad. Sci. USA 92, 8423-8427.
43. Liscum, E. and W. R. Briggs (1995) Mutations in the NPHI locus of Arabidopsis disrupt the perception of phototropic stimuli. Plant Cell 7, 473-485.
44. Short, T. W. and W. R. Briggs (1994) The transduction of blue light signals in higher plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 45, 143-171.
45. Palmer, J. M., K. M. F. Warpeha and W. R. Briggs (1995) Evidence that zeaxanthin is not the photoreceptor for phototropism in maize coleoptiles. Plant Physiol. 110, 1323-1328.
46. Quinones, M. A. and E. Zeiger (1994) A putative role of the xanthophyll, zeaxanthin, in blue light photoreception of corn coleoptiles. Science 264, 558-561.
47. Hager, A. (1996) Properties of a blue-light-absorbing photo-receptor kinase localized in the plasma membrane of the coleoptile tip region. Planta 198, 294-299.
48. Liscum, E., J. C. Young, K. L. Poff and R. P. Hangarter (1992) Genetic separation of phototropism and blue light inhibition of stem elongation. Plant Physiol. 100, 267-271.
49. Beggs, C. J. and E. Wellman (1994) Photocontrol of flavonoid biosynthesis. In Photomorphogenesis in Plants. (Edited by R. E. Kendrick and G. H. M. Kronenberg), pp. 733-751. Kluwer, Dordrecht, Netherlands.
50. Kendrick, R. E. and G. H. M. Kronenberg (eds.) (1994) Photomorphogenesis in Plants. Kluwer, Dordrecht, Netherlands.
51. Lam, E., M. Benedyk and N. H. Chua (1989) Characterization of phytochrome-regulated gene expression in a photoautotrophic cell suspension: possible role for calmodulin. Mol. Cell. Biol. 9, 4819-4823.
52. Romero, L. C., B. Biswal and P. S. Song (1991) Protein phosphorylation in isolated nuclei from etiolated Avena seedlings. Effects of red/far-red light and cholera toxin. FEBS Lett. 282, 347-350.
53. Romero, L. C., D. Sommer, C. Gotor and P. S. Song (1991) G-proteins in etiolated Avena seedlings. Possible phytochrome regulation. FEBS Lett. 282, 341-346.
54. Romero, L. C. and E. Lam (1993) Guanine nucleotide binding protein involvement in early steps of phytochrome-regulated gene expression. Proc. Natl. Acad. Sci. USA 90, 1465-1469.
55. Neuhaus, G., C. Bowler, R. Kern and N.-H. Chua (1993) Calcium/calmodulin-dependent and -independent phytochrome signal transduction pathways. Cell 73, 937-952.
56. Barnes, S. A., R. B. Quaggio and N.-H, Chua (1995) Phytochrome signal-transduction: characterization of pathways and isolation of mutants. Phil. Trans. R. Soc. Lond. B 350, 67-74.
57. Bowler, C., G. Neuhaus, H. Yamagata and N.-H. Chua (1994) Cyclic GMP and calcium mediate phytochrome phototransduction. Cell 77, 73-81.
58. Bowler, C., H. Yamagata, G. Neuhaus and N.-H. Chua (1994) Phytochrome signal transduction pathways are regulated by reciprocal control mechanisms. Genes & Dev. 8, 2188-2202.
59. Warpeha, K. M. F., H. E. Hamm, M. M. Rasenick and L. S. Kaufman (1991) A blue-light activated GTP-binding protein in the plasma membranes of etiolated peas. Proc. Natl. Acad. Sci. USA 88, 8925-8929.
60. Ma, H., M. F. Yanofsky and E. M. Meyerowitz (1990) Molecular cloning and characterization of GPAI, a G protein α subunit gene from Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 87, 3821-3825.
61. Ma, H., M. F. Yanofsky and H. Huang (1991) Isolation and sequence analysis of TGAI cDNAs encoding a tomato G protein α subunit. Gene 107, 189-195.
62. Ishida, S., Y. Takahashi and T. Nagata (1993) Isolation of cDNA of an auxin-regulated gene encoding a G protein β subunit-like protein from tobacco BY-2 cells. Proc. Nait. Acad. Sci. USA 90, 11152-11156.
63. Weiss, C. A., C. W. Garnaat, K. Mukai and H. Ma (1994) Isolation of cDNAs encoding guanine nucleotide-binding protein β-subunit homologues from maize (ZGB 1) and Arabidopsis (AGB 1). Proc. Natl. Acad. Sci. USA 91, 9554-9558.
64. Nagano, Y., N. Murai, R. Matsuno and Y. Sasaki (1993) Isolation and characterization of cDNAs that encode eleven small GTP-binding proteins from Pisum sativum. Plant Cell Physiol. 34, 447-455.
65. Nagano, Y., Y. Okada, H. Narita, Y. Asaka and Y. Sasaki (1995) Location of light-repressible, small GTP-binding protein of the YPT/rab family in the growing zone of etiolated pea stems. Proc. Natl. Acad. Sci. USA 92, 6314-6318.
66. Yoshida, K., Y. Nagano, N. Murai and Y. Sasaki (1993) Phytochrome-regulated expression of the genes encoding the small GTP-binding proteins in peas. Proc. Natl. Acad. Sci. USA 90, 6636-6640.
67. Sommers, D. and P. S. Song (1994) Isolation and purification of a small-molecular-weight GTP-binding protein from plants. Protein Express. Purif. 5, 402-408.
68. Terryn, N., M. Van Montague and D. Inze (1993) GTP-binding proteins in plants. Plant Mol. Biol. 22, 143-152.
69. Harter, K., H. Frohnmeyer, S. Kircher, T. Kunkel, S. Muhlbauer and E. Schafer (1994) Light induces rapid changes of the phosphorylation pattern in the cytosol of evacuolated parsley protoplasts. Proc. Natl. Acad. Sci. USA 91, 5038-5042.
70. Sheen, J. (1993) Protein phosphatase activity is required for light-inducible gene expression in maize. EMBO J. 12, 3497-3505.
71. Chory, J., C. Peto, R. Feinbaum, L. Pratt and F. Ausubel (1989) Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light. Cell 58, 991-999.
72. Deng, X.-W., T. Caspar and P. H. Quail (1991) COP1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis. Genes & Dev. 5, 1172-1182.
73. Wei, N. and X.-W. Deng (1992) COP9: a new genetic locus involved in light-regulated development and gene expression in Arabidopsis. Plant Cell 4, 1507-1518.
74. Wei, N., S. F. Kwok, A. A. von, A. Lee, T. W. McNellis, B. Piekos and X.-W. Deng (1994) Arabidopsis COP8, COP10, and COP11 genes are involved in repression of photomorphogenic development in darkness. Plant Cell 6, 629-643.
75. Castle, L. and D. Meinke (1994) A FUSCA gene of Arabidopsis encodes a novel protein essential for plant development. Plant Cell 6, 25-41.
76. Misera, S., A. J. Muller, H. U. Weiland and G. Jurgens (1994) The FUSCA genes of Arabidopsis: negative regulators of light responses. Mol. Gen. Genet. 244, 242-252.
77. Kwok, S. F., B. Piekos, S. Misera and X.-W. Deng (1996) A compliment of ten essential and pleiotropic Arabidopsis COP/DET/FUS genes is necessary for repression of photomorphogenesis in darkness. Plant Physiol. 110, 731-742.
78. Chory, J. (1992) A genetic model for light-regulated seedling development. Development 115, 337-354.
79. Ang, L. H. and X.-W. Deng (1994) Regulatory hierarchy of photomorphogenic loci: allele-specific and light-dependent interaction between the HY5 and COP1 loci. Plant Cell 6, 613-628.
80. Wei, N., D. A. Chamovitz and X.-W. Deng ( 1994) Arabidopsis COP9 is a component of a novel signaling complex mediating light control of development. Cell 78, 117-124.
81. Deng, X.-W., M Matsui, N. Wei, D. Wagner, A. M. Chu, K. A. Feldmann and P. H. Quail (1992) COP1, an Arabidopsis regulatory gene, encodes a protein with both a zinc-binding motif and a Gβ homologous domain. Cell 71, 791-801.
82. McNellis, T. W., A. G. von Arnim, T. Araki, Y. Komeda, S. Misera and X.-W. Deng (1994) Genetic and molecular analysis of an allelic series of copl mutants suggests functional roles for the multiple protein domains. Plant Cell 6, 487-500.
83. Pepper, A., T. Delaney, T. Washburn, D. Poole and J. Chory (1994) DET 1, a negative regulator of light-mediated development and gene expression in Arabidopsis encodes a novel nuclear-localized protein. Cell 78, 109-116.
84. McNellis, T. W., A. G. von Arnim and X.-W. Deng (1994) Overexpression of Arabidopsis COP1 results in partial suppression of light-mediated development: evidence for a lightinactivatable represser of photomorphogenesis. Plant Cell 6, 1391-1400.
85. von Arnim, A. G. and X.-W. Deng (1994) Light inactivation of Arabidopsis photomorphogenic repressor COP1 involves a cell-specific regulation of its nucleo-cytoplasmic partitioning. Cell 79, 1035-1045.
86. von Arnim. A. G. and X.-W. Deng (1993) Ring finger motif of Arabidopsis thaliana COP1 defines a new class of zincbinding domain. J. Biol. Chem. 268, 19626-19631.
87. Kingston, R. E., C. A. Bunker and A. N. Imbalzano (1996) Repression and activation by multiprotein complexes that alter chromatin structure. Genes & Dev. 10, 905-920.
88. II,80 subunit of Drosophila TFIID contains β-transducin repeats. Nature 363, 176-179.
89. McNellis, T. W., K. U. Torii and X.-W. Deng (1996) Expression of an N-terminal fragment of COP1 confers partial dominant-negative suppression of seedling photomorphogenic development in transgenic Arabidopsis. Plant Cell. (In press)
90. Matsui, M., C. D. Stoop, A. G. von Arnim, N. Wei and X.-W. Deng (1995) Arabidopsis COP1 protein specifically interacts in vitro with a cytoskeleton-associated protein. Proc. Natl. Acad. Sci. USA 92, 4239-4243.
91. Staub, J. M., N. Wei and X.-W. Deng (1996) Evidence that FUS6 is a component of the nuclear localized COP9 complex. Plant Cell. (In press)
92. Chamovitz, D., N. Wei, M. Osterlund, J. M. Staub, M. Matsui and X.-W. Deng (1996) The COP9 complex, a novel multisubunit nuclear regulator involved in light control of a plant development switch. Cell 86, 115-121.
93. Bowdish, K. S., B. H. Spain, A. Pacal, S. Fluckiger Staub, D. Koo and J. Colicelli (1995) Human cDNAs that suppress the lethality of a S. cerevisiae G protein mutation. GenBank, accession number U20285.
94. Chamovitz, D. A. and X.-W. Deng (1995) The novel components of the Arabidopsis light signaling pathway may define a group of general developmental regulators shared by both animal and plant kingdoms. Cell 82, 353-354.
95. Hou, Y., A. G. von Arnim and X.-W. Deng (1993) A new class of Arabidopsis constitutive pholomorphogenic genes involved in regulating cotyledon development. Plant Cell 5, 329-339.
96. Chory, J., P. Nagpal and C. A. Peto (1991) Phenotypic and genetic analysis of det2, a new mutant that affects light-regulated seedling development in Arabidopsis. Plant Cell 3, 445-459.
97. Cabrera y Poch, H. L., C. A. Peto and J. Chory (1993) A mutation in the Arabidopsis DET3 gene uncouples photoregulated leaf development from gene expression and chloroplast biogenesis. Plant J. 4, 671-682.
98. Lehman, A., R. Black and J. Ecker (1996) HOOKLESSI, an ethylene response gene, is required for differential cell elongation in the Arabidopsis hypocotyl. Cell 85, 183-194.
99. Li, J., P. Nagpal, V. Vitart, T. C. McMorris and J. Chory (1996) A role for brassinosteroids in light-dependent development of Arabidopsis. Science 272, 398-401.
100. Ecker, J. R. (1995) The ethylene signal transduction pathway in plants. Science 268, 667-675.
101. Chory, J., D. Reinecke, S. Sim, T. Washburn and M. Brenner (1994) A role for cytokinins in de-etiolation in Arabidopsis. Plant Physiol. 104, 339-347.
102. Su, W. and S. H. Howell (1995) The effects of cytokinin and light on hypocotyl elongation in Arabidopsis seedlings are in-dependent and additive. Plant Physiol. 108, 1423-1430.
103. Chaudhury, A. M., S. Letham. S. Craig and E. S. Dennis (1993) ampl: a mutant with high cytokinin levels and altered embryonic pattern, faster vegetative growth, constitutive photomorphogenesis and precocious flowering. Plant J. 4, 907-916.
104. Chin-Atkins, A. N., S. Craig, C. H. Hocart, E. S. Dennis and A. M. Chaudhury (1996) Increased endogenous cytokinin in the Arabidopsis ampl mutant corresponds with de-etiolation responses. Planta 198, 549-556.
105. Lopez-Juez, E., M. Kobayashi, A. Sakurai, Y. Kamiya and R. E. Kendrick (1995) Phytochrome, gibberellins, and hypocotyl growth. Plant Physiol. 107, 131-140.
106. Weatherwax, S. C, M. S. Ong, J. Degenhardt, E. A. Bray and E. M. Tobin (1996) The interaction of light and abscisic acid in the regulation of plant gene expression. Plant Physiol. 111, 363-370.
107. Szekeres, M., K. Nemeth, Z. Koncz-Kalman, J. Mathur, A. Kauschmann, T. Altman, G. P. Redei, F. Nagy, J. Schell and C. Koncz (1996) Brassinosteroids rescue the deficiency of CYP90, a cytochrome P450, controlling cell elongation and de-etiolation in Arabidopsis. Cell 85, 171-182.
108. Takahashi, T., A. Gasch, N. Nishizawa and N.-H. Chua (1995) The DIMINUTO gene of Arabidopsis is involved in regulating cell elongation. Genes & Dev. 9, 97-107.
109. Desnos, T., V. Orbovic, C. Bellini, J. Kronenberger, M. Caboche, J. Traas and H. Hofte (1996) Procuste 1 mutants identify two distinct genetic pathways controlling hypocotyl cell elongation, respectively in dark- and light-grown Arabidopsis seedlings. Development 122, 683-693.