Localization of OccR-activated and TraR-activated promoters that express two ABC-type permeases and the traR gene of Ti plasmid pTiR10

Molecular Microbiology

Volumn 20, Issue 6, 1996, Pages 1199-1210

  Fuqua, Clay ^a   Winans, Stephen C ^b  

^a TRINITY UNIVERSITY   (United States)

^b Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABC TRANSPORTER; BACTERIAL DNA; BACTERIAL PROTEIN; OCTOPINE; OLIGOPEPTIDE; PERMEASE;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL GENETICS; GENE EXPRESSION REGULATION; GENE MAPPING; GENE SEQUENCE; NONHUMAN; PLASMID; PRIORITY JOURNAL; PROMOTER REGION; RHIZOBIUM RADIOBACTER; SALMONELLA TYPHIMURIUM; SEQUENCE HOMOLOGY; TRANSCRIPTION INITIATION;

ALLELES; ARGININE; ATP-BINDING CASSETTE TRANSPORTERS; BACTERIAL PROTEINS; BACTERIOPHAGE T7; BASE SEQUENCE; DNA, BACTERIAL; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; MEMBRANE TRANSPORT PROTEINS; MOLECULAR SEQUENCE DATA; PLASMIDS; PROMOTER REGIONS (GENETICS); RESTRICTION MAPPING; TRANS-ACTIVATION (GENETICS); TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

AGROBACTERIUM TUMEFACIENS; BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); SALMONELLA TYPHIMURIUM; TYPHIMURIUM;

EID: 0029956177     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2958.1996.tb02640.x     Document Type: Article

References (61)

1. Abouhamad, W.N., and Manson, M.D. (1994) The dipeptide permease of Escherichia coli closely resembles other bacterial transport systems and shows growth-phase-dependent expression. Mol Microbiol 14: 1077-1092.
2. Abouhamad, W.N., Manson, M.D., Gibson, M.M., and Higgins, C.F. (1991) Peptide transport and chemotaxis in Escherichia coli and Salmonella typhimurium: characterization of the dipeptide permease (Dpp) and the dipeptide-binding protein. Mol Microbiol 5: 1035-1047.
3. Banerjee, R.V., Johnston, N.L., Sobeski, J.K., Datta, P., and Matthews, R.G. (1989) Cloning and sequence analysis of the Escherichia coli metH gene encoding cobalamin-dependent methionine synthase and isolation of a tryptic fragment containing the cobalamin-binding domain. J Biol Chem 264: 13888-13895.
4. Castilho, B., Olfson, P., and Casadaban, M.J. (1984) Plasmid insertion mutagenesis and lac gene fusion with the mini-Mu bacteriophage transposons. J Bacteriol 158: 488-495.
5. Chen, C.-Y., and Winans, S.C. (1991) Controlled expression of the transcriptional activator gene virG in Agrobacterium tumefaciens by using the Escherichia coli lac promoter. J Bacteriol 173: 1139-1144.
6. Chilton, M.-D., Currier, T.C., Farrand, S.K., Bendich, A.J., Gordon, M.P., and Nester, E.W. (1974) Agrobacterium tumefaciens DNA and PS8 bacteriophage DNA not detected in crown gall tumors. Proc Natl Acad Sci USA 71: 3672-3676.
7. Cho, K., and Winans, S.C. (1993) Altered-function mutations in the Agrobacterium tumefaciens OccR protein and in an OccR-regulated promoter. J Bacteriol 175: 7715-7719.
8. Cho, K., Fuqua, C., Martin, B.S., and Winans, S.C. (1996) Identification of Agrobacterium tumefaciens genes that direct the complete catabolism of octopine. J Bacteriol 178: 1872-1880.
9. Cox, K.H., DeLeon, D.V., Angerer, L.M., and Angerer, R.C. (1984) Detection of mRNAs in sea urchin embryos by in situ hybridization with asymmetric RNA probes. Dev Biol 101:485-502.
10. De Vos, G., De Beuckeleer, M., Von Montagu, M., and Schell, J. (1981) Restriction endonuclease mapping of the octopine tumor-inducing plasmid pTiAch5 of Agrobacterium tumefaciens. Plasmid 6: 249-253.
11. Dessaux, Y., Tempé, J., and Farrand, S.K. (1987) Genetic analysis of mannityl opine catabolism in octopine-type Agrobacterium tumefaciens strain 15955. Mol Gen Genet 208: 301-308.
12. Dessaux, Y., Petit, A., and Tempe, J. (1992) Opines in Agrobacterium biology, In Molecular Signals in Plant-Microbe Communications. Verma, D.P.S. (ed.). Ann Arbor, MI: CRC Press, pp. 109-136.
13. Devereux, J., Haeberli, P., and Smithies, O. (1984) A comprehensive set of sequence analysis programs for the VAX. Nucl Acids Res 12: 387-395.
14. Doige, C.A., and Ames, G.F.-L. (1993) ATP-dependent transport systems in bacteria and humans: relevance to cystic fibrosis and multidrug resistance. Annu Rev Microbiol 47: 291-319.
15. Drummond, J.T., Huang, S., Blumenthal, R.M., and Matthews, R.G. (1993) Assignment of enzymatic function to specific protein regions of cobalamin-dependent methionine synthase from Escherichia coli. Biochemistry 32: 9290-9295.
16. Ellis, J.G., and Murphy, PJ. (1981) Four new opines from crown gall tumors - their detection and properties. Mol Gen Genet 181: 36-43.
17. Ellis, J.G., Kerr, A., Petit, A., and Tempé (1982) Conjugal transfer of nopaline and agropine Ti-plasmids - the role of agrocinopines. Mol Gen Genet 186: 269-273.
18. Farrand, S.K. (1993) Conjugal transfer of Agrobacterium plasmids. In Bacterial Conjugation, Clewell, D.B. (ed.). New York: Plenum Publishing Corp., pp. 255-291.
19. Fuqua, W.C., and Winans, S.C. (1994) A LuxR-LuxI type regulatory system activates Agrobacterium Ti plasmid conjugal transfer in the presence of a plant tumor metabolite. J Bacteriol 176: 2796-2806.
20. Fuqua, C., and Winans, S.C. (1996) Conserved cis-acting promoter elements are required for density-dependent transcription of Agrobacterium tumefaciens conjugal transfer genes. J Bacteriol 178: 435-440.
21. Fuqua, W.C., Winans, S.C., and Greenberg, E.P. (1994) Quorum sensing in bacteria: the LuxR/LuxI family of cell density-responsive transcriptional regulators. J Bacteriol 176: 269-275.
22. Fuqua, C., Burbea, M., and Winans, S.C. (1995) Activity of the Agrobacterium Ti plasmid conjugal transfer regulator TraR is inhibited by the product of the traM gene. J Bacteriol 177: 1367-1373.
23. Habeeb, L.F., Wang, L., and Winans, S.C. (1991) Transcription of the octopine catabolism operon of the Agrobacterium tumor-inducing plasmid pTiA6 is activated by a LysR homolog. Mol Plant-Microbe Interact 4: 379-385.
24. Hanson, M.S., Slaughter, C., and Hansen, E.J. (1992) The hbpA gene of Haemophilus influenzae type b encodes a heme-binding lipoprotein conserved among heme-dependent Haemophilus species. Infect Immun 60: 2257-2266.
25. Hayman, G.T., von Bodman, S.B., Kim, H., Jiang, P., and Farrand, S.K. (1993) Genetic analysis of the agrocinopine catabolic region of Agrobacterium tumefaciens Ti plasmid pTiC58, which encodes genes genes required for opine and agrocinopine transport. J Bacteriol 175: 5575-5584.
26. Higgins, C.F. (1992) ABC transporters - from microorganisms to man. Annu Rev Cell Biol 8: 67-113.
27. Miles, I.D., Powell, L.M., and Higgins, C.F. (1987) Peptide transport in Salmonella typhimurium: molecular cloning and characterization of the oligopeptide permease genes. Mol Gen Genet 206: 101-109.
28. Hwang, I., Li, P.-L., Zhang, L., Piper, K.R., Cook, D.M., Tate, M.E., and Farrand, S.K. (1994) TraI, a LuxI homologue, is responsible for production of conjugation factor, the Ti plasmid N-acylhomoserine lactone auotinducer. Proc Natl Acad Sci USA 91: 4639-4643.
29. Hwang, I., Cook, D.M., and Farrand, S.K. (1995) A new regulatory element modulates homoserine lactone-mediated autoinduction of Ti plasmid conjugal transfer. J Bacteriol 177: 449-458.
30. Kaniga, K., Delor, I., and Cornelis, G.R. (1991) A wide-host-range suicide vector for improving reverse genetics in Gram-negative bacteria: inactivation of the blaA gene of Yersinia enterocolitica. Gene 109: 137-141.
31. Kaplan, H.B., and Greenberg, E.P. (1985) Diffusion of autoinducer is involved in regulation of the Vibrio fischeri luminescence system. J Bacteriol 163: 1210-1214.
32. Kerr, A., and Htay, K. (1974) Biological control of crown gall through bacteriocin production. Physiol Plant Path 4: 37-44.
33. Kerr, A., Manigault, P., and Tempé, J. (1977) Transfer of virulence in vivo and in vitro in Agrobacterium. Nature 265: 560-561.
34. Klapwijk, P.M., Scheulderman, T., and Schilperoort, R. (1978) Coordinated regulation of octopine degradation and conjugative transfer of Ti plasmids in Agrobacterium tumefaciens: evidence for a common regulatory gene and separate operons. J Bacteriol 136: 775-785.
35. Kolter, R., Inuzuka, M., and Helinski, D.R. (1978) Trans complementation-dependent replication of a low molecular weight origin fragment from plasmid R6K. Cell 15: 1199-1208.
36. McBride, K.E., and Summerfeit, K.R. (1990) Improved binary vectors for Agrobacterium-mediated plant transformation. Plant Mol Biol 14: 269-276.
37. Messing, J. (1979) A multipurpose cloning system based on single-stranded bacteriophage M13. Rec DNA Tech Bull 2: 43-48.
38. Miller, V.L., and Mekalanos, J.J. (1988) A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae. J Bacteriol 170: 2575-2583.
39. Navarro, C., Wu, L.F., and Mandrand-Berthelot, M.A. (1993) The nik operon of Escherichia coli encodes a periplasmic binding protein-dependent transport system for nickel. Mol Microbiol 9: 1181-1191.
40. Olson, E.R., Dunyak, D.S., Jurss, L.M., and Poorman, R.A. (1991) Identification and characterization of dppA, an Escherichia coli gene encoding a periplasmic dipeptide transport protein. J Bacteriol 173: 234-244.
41. Parra-Lopez, C., Baer, M.T., and Groisman, E.A. (1993) Molecular genetic analysis of a locus required for resistance to antimicrobial peptides in Salmonella typhimurium. EMBO J 12: 4053-4062.
42. Piper, K.R., Beck von Bodman, S., and Farrand, S.K. (1993) Conjugation factor of Agrobacterium tumefaciens regulates Ti plasmid transfer by autoinduction. Nature 362: 448-450.
43. Roberts, W.P., Tate, M.E., and Kerr, A. (1977) Agrocin 84 is a 6-N-phosphoramidate of an adenine nucleotide analogue. Nature 265: 379-381.
44. Rust, L., Pesci, E.C., and Iglewski, B.H. (1996) Analysis of the Pseudomonas aeruginosa elastase (lasB) regulatory region. J Bacteriol 178: 1134-1140.
45. Sambrook, J., Fritsch, E., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
46. Saurin, W., Koster, W., and Dassa, E. (1994) Bacterial binding protein-dependent permeases: characterization of distinctive signatures for functionally related integral cytoplasmic membrane proteins. Mol Microbiol 1994: 6.
47. Schindler, U., Sans, N., and Schröeder, J. (1989) Ornithine cyclodeaminase from octopine Ti plasmid Ach5: identification, DNA sequence, enzyme properties, and comparison with gene and enzyme from nopline Ti plasmid C5. Bacteriol 171: 847-854.
48. Seed, P.C., Passador, L., and Iglewski, B.H. (1995) Activation of the Pseudomonas aeruginosa last gene by LasR and the Pseudomonas autoinducer PAI - an autoinduction regulatory hierarchy. J Bacteriol 177: 654-659.
49. Shadel, G.S., and Baldwin, T.O. (1991) The Vibrio fischeri LuxR protein is capable of bidirectional stimulation of transcription and both positive and negative regulation of the luxR gene. J Bacteriol 173: 568-574.
50. Shadel, G.S., and Baldwin, T.O. (1992) Positive autoregulation of the Vibrio fischeri luxR gene. J Biol Chem 267: 7696-7702.
51. Stonier, T. (1960) Agrobacterium tumefaciens Conn. II. Production of an antibiotic substance. J Bacteriol 79: 889-898.
52. Swift, S., Winson, M.K., Chan, P.F., Bainton, N.J., Birdsall, M., Reeves, P.J., Rees, C.E.D., Chhabra, S.R., Hill, P.J., Throup, J.P., Bycroft, B.W., Salmond, G.P.C., Williams, P., and Stewart, G.S.A.B. (1993) A novel strategy for the isolation of luxI homologues: evidence for the widespread distribution of a LuxR:LuxI superfamily in enteric bacteria. Mol Microbiol 10: 511-520.
53. Tabor, S., and Richardson, C.C. (1985) A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc Natl Acad Sci USA 82: 1074-1078.
54. Tempe, J., Petit, A., Holsters, Van Montagu, M., and Schell, J. (1977) Thermosensitive step associated with transfer of the Ti plasmid during conjugation: possible relation to transformation in crown gall. Proc Natl Acad Sci USA 74: 2848-2849.
55. Valdivia, R.H., Wang, L., and Winans, S.C. (1991) Characterization of a putative periplasrnic transport system for octopine accumulation encoded by Agrobacterium tumefaciens Ti plasmid pTiA. J Bacteriol 173: 6398-6405.
56. Verkamp, E., Backman, V.M., Bjoernsson, J.M., Soll, D., and Eggertsson, G. (1993) The periplasmic dipeptide permease system transports 5-aminolevulinic acid in Escherichia coli. J Bacteriol 175: 1452-1456.
57. Von Lintig, J., Zanker, H., and Schroder, J. (1991) Positive regulators of opine-inducible promoters in the nopaline and octopine catabolism regions of Ti plasmids. Mol Plant-Microbe Interact 4: 370-378.
58. Walker, J.E., Saraste, M., Runswick, M.J., and Gay, N.J. (1982) Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1: 945-951.
59. Wang, L., Helmann, J.D., and Winans, S.C. (1992) The Agrobacterium tumefaciens transcriptional activator OccR causes a bend at a target promoter, which is partially relaxed by a plant tumor metabolite. Cell 69: 659-667.
60. Zanker, H., von Lintig, J., and Schröder, J. (1992) Opine transport genes in the octopine (occ) and noplaine (noc) catabolic regions in Ti plasmids of Agrobacterium tumefaciens. J Bacteriol 174: 841-849.
61. Zhang, L., Murphy, P.J., Kerr, A., and Tate, M.E. (1993) Agrobacterium conjugation and gene regulation by N-acylhomoserine lactones. Nature 362: 446-448.