Identification of Agrobacterium tumefaciens genes that direct the complete catabolism of octopine

Journal of Bacteriology

Volumn 178, Issue 7, 1996, Pages 1872-1880

  Cho, Kyungyun ^a   Fuqua, Clay ^a,b   Martin, Bryan S ^a,c   Winans, Stephen C ^a  

^a Department of Obstetrics Gynecology   (United States)

^b TRINITY UNIVERSITY   (United States)

^c PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARGINASE; OCTOPINE;

ARTICLE; BACTERIAL GENE; BACTERIAL METABOLISM; BACTERIUM MUTANT; GENETIC ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; RHIZOBIUM RADIOBACTER; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

AGROBACTERIUM TUMEFACIENS; BACTERIA (MICROORGANISMS);

EID: 0029880576     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.178.7.1872-1880.1996     Document Type: Article

References (40)

1. Allen, S. W., A. Senti-Willis, and S. R. Maloy. 1993. DNA sequence of the putA gene from Salmonella typhimurium, a bifunctional membrane-associated dehydrogenase that binds DNA. Nucleic Acids Res 21:1676.
2. Cangelosi, G. A., E. A. Best, G. Martinetti, and E. W. Nester. 1990. Genetic analysis of Agrobacterium Methods Enzymol. 204:384-397.
3. Chen, C.-Y., and S. C. Winans. 1991 Controlled expression of the transcriptional activator gene virG in Agrobacterium tumefaciens by using the Escherichia coli lac promoter. J. Bacteriol. 173:1139-1144
4. Cho, K., and S. C. Winans. 1993 Altered-function mutations in the Agrobacterium tumefaciens OccR protein and in an OccR-regulated promoter. J Bacteriol. 175:7715-7719
5. Cho, K., and S. C. Winans. Submitted for publication.
6. Dessaux, Y., A. Petit, J. G. Ellis, G. Legrain, M. Demarez, J. M. Wiame, M. Popoff, and J. Tempé. 1989. Ti plasmid-controlled chromosome transfer in Agrobacterium tumefaciens J Bacteriol. 171:6363-6366.
7. Dessaux, Y., A. Petit, and J. Tempé. 1992 Opines in Agrobacterium biology, p 109-136. In D. P. S Verma (ed). Molecular signals in plant-microbe communications CRC Press Inc., Boca Raton, Fla.
8. Dessaux, Y., A. Petit, J. Tempé, M. Demarez, C. Legrain, and J. M. Wiame. 1986 Arginine catabolism in Agrobacterium strains: role of the Ti plasmid. J. Bacteriol 166:44-50.
9. De Vos, G., M. De Beuckeleer, M. Van Montagu, and J. Schell. 1981. Restriction endonuclease mapping of the octopine tumor-inducing plasmid pTiAch5 of Agrobacterium tumefaciens. Plasmid 6:249-253.
10. Ellis, J. G., A. Kerr, J. Tempé, and A. Petit. 1979 Arginine catabolism a new function of both ortopine and nopaline Ti-plasmid of Agrobacterium Mol. Gen. Genet. 173:263-269
11. Farrand, S. K. Personal communication
12. Farrand, S. K., and Y. Dessaux. 1986. Proline biosynthesis encoded by the noc and occ loci of Agrobacterium Ti plasmids. J. Bacteriol. 167:732-734.
13. Fuqua, C., M. Burbea, and S. C. Winans. 1995 Activity of Agrobacterium Ti plasmid conjugal transfer regulator TraR is inhibited by the product of the traM gene. J. Bacteriol 177:1367-1373
14. Fuqua, W. C., and S. C. Winans. 1994 A LuxR-LuxI type regulatory system activates Agrobacterium Ti plasmid conjugal transfer in the presence of a plant tumor metabolite J. Bacteriol. 176:2796-2806.
15. Gottachalk, G. 1986. Bacterial metabolism, 2nd ed. Springer-Verlag, New York.
16. Habeeb, L. F., L. Wang, and S. C. Winans. 1991. Transcription of the octopine catabolism operon of the Agrobacterium tumor-inducing plasmid pTiA6 is activated by a LysR-type regulatory protein. Mol Plant-Microbe Interact 4:379-385.
17. Kaniga, K., I. Delor, and G. R. Cornelis. 1991. A wide-host-range suicide vector for improving reverse genetics in gram-negative bacteria, inactivation of the blaA gene of Yersinia enterocolitica Gene 109:137-141.
18. Klapwijk, P. M., T. Scheulderman, and R. Schilperoort. 1978. Coordinated regulation of octopine degradation and conjugatrve transfer of Ti plasmids in Agrobacterium tumefaciens: evidence for a common regulatory gene and separate operons J. Bacteriol 136:775-785
19. Krishnan, M., J. W. Burger, W. S. Chilton, and S. B. Gelvin. 1991. Transport of nonmetabolizable opines by Agrobacterium tumifaciens J. Bacteriol 173: 903-905.
20. Leyh, T. S., T. F. Vogt, and Y. Suo. 1992 The DNA sequence of the sulfate activation locus from Escherichia coli K-12. J. Biol Chem 267:111405-10410.
21. 1-pyrroline-5-carboxylate dehydrogenase domains of the multifunctional Escherichia coli PutA protein. J. Mol. Biol. 243:950-956.
22. Menzel, R., and J. Roth. 1981. Purification of the putA gene product: a bifunctional membrane-bound protein from Salmonella typhimurium responsible for the two-step oxidation of proline to glutamate. J. Biol. Chem. 256:9755-9761.
23. Menzel, R., and J. Roth. 1981. Regulation of the genes for proline utilization in Salmonella typhimurium: autogenous repression by the putA gene product J. Mol. Biol. 148:21-44.
24. Miller, V. L., and J. J. Mekalanos. 1988. A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae. J. Bacteriol. 170: 2575-2585.
25. Needleman, S. B., and C. D. Wunsch. 1970. A general method applicable Lo the search for similarities in the amino acid sequence of two proteins. J. Mol Biol 48:443-453.
26. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y
27. Sans, N., G. Schröder, and J. Schröder. 1987. The Noc region of Ti plasmid C58 codes for arginase and ornithine cyclodeaminase. Eur. J. Biochem 167:81-87.
28. Schardl, C. L., and C. I. Kado. 1983. Ti plasmid and chromosomal ornithine catabolism genes of Agrobacterium tumefaciens C58. J. Bacteriol. 155:196-202.
29. Schindler, U., N. Sans, and J. Schröder. 1989. Ornithine cyclodeaminase from octopine T1 plasmid Ach5: identification. DNA sequence, enzyme properties, and comparison with gene and enzyme from the nopaline Ti plasmid C58. J. Bacteriol. 171:847-854
30. Schröder, J. GenBank accession no. Z30328.
31. Schrell, A., J. Alt-Moerbe, T. Lanz, and J. Schröder. 1989 Arginase of Agrobacterium Ti plasmid C58: DNA sequence, properties, and comparison with eucaryotic enzymes Eur. J. Biochem. 184:635-641.
32. Sharma, S. B., and E. R. Signer. 1990. Temporal and spatial regulation of the symbiotic genes of Rhizobium molality in planta revealed by transposon Tn5-gusA. Genes Dev. 4:344-356
33. Stalon, V., C. Vander Vauwen, P. Momin, and C. Legrain. 1987. Catabolism of arginine, citrulline and ornithine by Pseudomonas and related bacteria. J Gen. Microbiol 133:2487-2495.
34. Valdivia, R. H., L. Wang, and S. C. Winans. 1991. Characterization of a putative periplasmic transport system for octopine accumulation encoded by Agrobacterium tumefaciens Ti plasmid pTiA6. J. Bacteriol. 173:6398-6405.
35. Vissers, S., C. Legrain, and J.-M. Wiame. 1986. Control of a futile urea cycle by arginine feedback inhibition of ornithine carbamoyltransferase in Agrobacterium tumefaciens and Rhizobia. Eur. J Biochem. 159:507-511.
36. von Lintig, J., D. Kreusch, and J. Schröder. 1994. Opine-regulated promoters and LysR-type regulators in the nopaline (noc) and octopine (occ) catabolic regions of Ti plasmids of Agrobacterium tumefaciens. J. Bacteriol. 176:495-503.
37. von Lintig, J., H. Zanker, and J. Schröder. 1991. Positive regulators of opine-inducible promoters in the nopaline and octopine catabolism regions of Ti plasmids. Mol. Plant-Microbe Interact. 4:370-378
38. Winans, S. C. 1992. Two-way chemical signaling in Agrobacterium-plant interactions. Microbiol. Rev. 56:12-31.
39. Zanker, H., G. Lurz, U. Langridge, P. Langridge, D. Kreusch, and J. Schröder. 1994. Octopine and nopaline oxidases from Ti plasmids of Agrobacterium tumefaciens: molecular analysis, relationship, and functional characterization. J. Bacteriol. 176:4511-4517.
40. Zanker, H., J. von Lintig, and J. Schröder. 1992. Opine transport genes in the octopine (occ) and nopaline (noc) catabolic regions in Ti plasmids of Agrobacterium tumefaciens. J. Bacteriol. 174:841-849.