Symmetry, stability, and dynamics of multidomain and multicomponent protein systems

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 25, 1996, Pages 14243-14248

  Blundell, Tom L ^a   Srinivasan, N ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

OLIGOMER; PROTEIN;

CONFERENCE PAPER; GEOMETRY; MACROMOLECULE; MOLECULAR DYNAMICS; MOTION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN STABILITY; PROTEIN STRUCTURE; ROTATION; X RAY CRYSTALLOGRAPHY;

EID: 0029949156     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.25.14243     Document Type: Article

References (69)

1. Schulz, G.E. & Schirmer, R. H. (1979) Principles of Protein Structure. (Springer, New York).
2. Creighton, T. E. (1993) Proteins: Structures and Molecular Properties. (Freeman, New York).
3. Wlodawer, A., Miller, M., Jaskolski, M., Sathyanarayana, B. K., Baldwin, E., Weher, I. T., Selk, L. M., Clawson, L., Schneider, J. & Kent, S. B. H. (1989) Science 245, 616-621.
4. Lapatto, P., Blundell, T., Hemmings, A., Overington, J., Wildersprin. A., Wood, S., Merson, J. R., Whittle, P. J., Danley, D. E., Geoghegan, K. F., Hawrylik, S. J., Lee, S. E., Scheld, K. G. & Hobart, P. M. (1989) Nature (London) 342, 299-302.
5. Bax, B., Lapatto, L., Nalini, V., Driessen, H., Lindley, P. F., Mahadevan, D., Blundell, T. L. & Slingsby, C. (1990) Nature (London) 347, 776-780.
6. Huber, R., Deisenhofer, J., Colman, P. M., Matsushima, M. & Palm, W. (1976) Nature (London) 264, 415-420.
7. Ealick, S. E., Rule, S. A., Carter, D. C., Greenhough, T. J., Babu, Y. S., Cook, W. J., Habash, J., Helliwell, J. R., Stoeckler, J. D., Parks, Jr., R. D., Chen, S. F. & Bugg, C. E. (1990) J. Biol. Chem. 265, 1812-1820.
8. Weis, M. S., Wacker, T., Weckesser. J., Weite, W. & Schulz, G. E. (1990) FEBS Lett. 267, 268-272.
9. Frier, J. A. & Perutz, M. F. (1977) J. Mol. Biol. 112, 97-112.
10. Varghese, J. N., Laver, W. G. & Coleman, P. M. (1983) Nature (London) 303, 35-40.
11. Emsley, J., White, H. E., O'Hara, B. P., Oliva, G., Srinivasan, N., Tickle, I. J., Blundell, T. L., Pepys, M. B. & Wood, S. P. (1994) Nature (London) 367, 338-345.
12. Shrive, A. K., Cheetham, G. M. T., Holden, D., Myles, D. A. A., Turnell, W. G., Volanakis, J. E., Pepys, M. B., Bloomer, A. C. & Greenhough, T. J. (1996) Nat. Struct. Biol. 3, 346-354.
13. Vandenakker, F., Sarfaty, S., Twiddy, E. M., Connell, T. D., Holmes, R. K. & Hol, W. G. J. (1996) Structure 4, 665-678.
14. Blundell, T., Dodson, G., Hodgkin, D. & Mercola, D. (1972) Adv. Protein Chem. 26, 279-402.
15. Baker, E. N., Blundell, T. L., Cutfield, J. F., Cutfield, S. M., Dodson, E. J., Dodson, G. G., Hodgkin, D. M. C., Hubbard, R. E., Issacs, N. W., Reynolds, C. D., Sakabe, K., Sakabe, N. & Vijayan, M. (1988) Philos. Trans. R. Soc. London Ser. B 319, 369-456.
16. Tennent, G. A., Butler, P. J. G., Hutton, T., Woolfitt, A. R., Harvey, D. J., Rademacher, T. W. & Pepys, M. B. (1993) Eur. J. Biochem. 214, 91-97.
17. Braig, K., Otwinowski, Z., Hegde, R., Boisvert, D. C., Joachimiak, A., Horwich, A. L. & Sigler, P. B. (1994) Nature (London) 371, 578-586.
18. Wilmsen, H. U., Leonard, K. R., Tichelaar, W., Buckley, J. T. & Pattus, F. (1992) EMBO J. 11, 2457-2463.
19. Parker, M. W., Buckley, J. T., Postma, J. P. M., Tucker, A. D., Leonard, K., Pattus, F. & Tsernoglou. D. (1994) Nature (London) 367, 292-295.
20. Lowe, J., Stock, D., Jap, B., Zwickl, P., Baumeister, W. & Huber, R. (1995) Science 268, 533-539.
21. Neidhart, D. J., Kenyon, G. L., Gerlt, J. A. & Petsko, G. A. (1990) Nature (London) 347, 692-694.
22. McDermott, G., Prince, S. M., Freer, A. A., Hawthomthwaite-Lawless, A. M., Papiz, M. Z., Cogdell, R. J. & Issacs, N. W. (1995) Nature (London) 374, 517-521.
23. Meining, W., Bacher, A., Bachmann, L., Schmid, C, Weinkauf, S., Huber, R. & Nar, H. (1995) J. Mol. Biol. 253, 208-218.
24. Antson, A. A., Otridge, J., Brzozowski, A. M., Dodson, E. J., Dodson, G. G., Wilson, K. S., Smith, T. M., Yang, M., Kurecki, T. & Gollnick, P. (1995) Nature (London) 374, 693-700.
25. Warren, S. G., Edwards, B. F. P., Evans, D. R., Wiley, D. C. & Lipscomb, W. N. (1973) Proc. Natl. Acad. Sci. USA 70, 1117-1121.
26. Lawrence, M. C., Suzuki, E., Varghese, J. N., Davies, P. C., Van Donkelaar, A., Tulloch, P. A. & Coleman, P. M. (1993) EMBO J. 9, 9-15.
27. Dube, P., Taveres, P., Lurz, R. & Van Heel, M. (1993) EMBO J. 12, 1303-1309.
28. Hoare, R. J., Harrison, P. M. & Hoy, T. G. (1975) Nature (London) 255, 653-654.
29. Karrasch, S., Bullough, P.A. & Ghosh, R. (1995) EMBO J. 14, 631-638.
30. Bloomer, A. C., Champness, J. N., Bricogne, G., Staden, R. & Klug, A. (1978) Nature (London) 276, 362-368.
31. Winkler, F. K., Schutt, C. E., Harrison, S. C. & Bricogne, G. (1977) Nature (London) 265, 509-513.
32. Einspahr, H., Parks, E. H., Suguna, K., Subramanian, E. & Suddath, F. L. (1986) J. Biol. Chem. 261, 6518-6527.
33. Liao, D.-I., Kapadia, G., Ahmed, H., Vasta, G. R. & Herzberg, O. (1994) Proc. Natl. Acad. Sci. USA 91, 1428-1432.
34. Banerjee, R., Das, K., Ravishankar, R., Suguna, K., Surolia, A. & Vijayan, M. (1996) J. Mol. Biol. 259, 281-296.
35. Naismith, J. H., Emmerich, C., Habash, J., Harrop, S. J., Helliwell, J. R., Hunter, W. N., Raftery, J., Kalb, A. J. & Yariv, J. (1994) Acta Crystallogr. D 50, 847-858.
36. Srinivasan, N., White, H. E., Emsley, J., Wood, S. P., Pepys, M. B. & Blundell, T. L. (1994) Structure 2, 1017-1027.
37. Kelman, Z., Finkelstein, J. & Odonnell, M. (1995) Curr. Biol. 5, 1239-1242.
38. Crick, F. H. C. & Watson, J. D. (1956) Nature (London) 177, 473-475.
39. Casper, D. L. D. & Klug, A. (1962) Cold Spring Harbor Symp. Quant. Biol. 27, 1-24.
40. Thompson, D. (1952) On Growth and Form. (Cambridge Univ. Press, Cambridge, U.K.).
41. Wood, S. P., Oliva, G., O'Hara, B. P., White, H. E., Blundell, T. L., Perkins, S. J., Sardharwalla, I. & Pepys, M. B. (1988) J. Mol. Biol. 202, 169-173.
42. Srinivasan, N., Rufino, S. D., Pepys, M. B., Wood, S. P. & Blundell, T. L. (1996) Chemtracts Biochem. Mol Biol. 6, 149-164.
43. Shaanan, B., Lis, H. & Sharon, N. (1991) Science 254, 862-866.
44. Pepys, M. B. (1994) in Samter's Immunological Diseases, eds. Frank, M. M., Austen, K. F., Claman, H. N. & Unanue, E. R. (Little Brown, Boston), 5th Ed., pp. 637-655.
45. Blundell, T., Lindley, P., Miller, L., Moss, D., Slingsby, C., Tickle, I., Turnell, B. & Wistow, G. (1981) Nature (London) 289, 771-777.
46. White, H. E., Driessen, H. P. C., Slingsby, C., Moss, D. S. & Lindley, P. F. (1989) J. Mol. Biol. 207, 217-235.
47. Wistow, G., Summers, L. & Blundell, T. (1985) Nature (London) 315, 771-773.
48. Antson, A. A., Dodson, E. J. & Dodson, G. G. (1996) Curr. Opin. Struct. Biol. 6, 142-150.
49. Banner, D. W., Bloomer, A. C., Petsko, G. A., Phillips, D. C., Pogson, C. L, Wilson, I. A., Corran, P. H., Furth, A. J., Milman, J. D., Offord, R. E., Priddle, J. D. & Waley, S. G. (1975) Nature (London) 255, 609-614.
50. Wall, M. A., Coleman, D. E., Lee, E., Iniguezlluhi, J. A, Posner, B. A., Oilman, A. G. & Sprang, S. R. (1995) Cell 83, 1047-1058.
51. Sondek, J., Bohm, A., Lambright, D. G., Hamm, H. E. & Sigler, P. B. (1996) Nature (London) 379, 369-374.
52. Lambright, D. G., Sondek, J., Bohm, A., Skiba, N. P., Hamm, H. E. & Sigler, P. B. (1996) Nature (London) 379, 311-319.
53. Haurowitz, F. (1938) Hoppe-Seyler's Z. Physiol. Chem. 254, 266-274.
54. Perutz, M. F. (1962) Proteins and Nucleic Acids (Elsevier, Amsterdam).
55. Franzen, S., Lambrey, J. C., Bohn, B., Poyart, C. & Martin, J. L. (1994) Nat. Struct. Biol. 1, 230-233.
56. Neet, K. E. (1995) Methods Enzymol. 249, 519-567.
57. Jardetzky, O. (1996) Prog. Biophys. Mol. Biol., in press.
58. Stryer, L. (1975) Biochemistry (Freeman, San Francisco).
59. Evans, P. R., Farrants, G. W. & Hudson, P. J. (1981) Philos. Trans. R. Soc. London, Ser. B 293, 52-63.
60. Lipscomb, W. N. (1991) Chemtracts Biochem. Mol. Biol. 2, 1-15.
61. Cooper, J. B., Khan, G., Taylor, G., Tickle, I. J. & Blundell, T. L. (1990) J. Mol. Biol. 214, 199-222.
62. Tang, J., James, M. N. G., Hau, I.-N., Jenkins, J. A. & Blundell, T. L. (1978) Nature (London) 271, 618-621.
63. Pearl, L. H. & Taylor, W. R. (1987) Nature (London) 329, 351-54.
64. Whittle, P. J. & Blundell, T. L. (1994) Annu. Rev. Biophvs. Biomol. Struct. 23, 349-375.
65. Saibil, H. R., Zheng, D., Roseman, A. M., Hunter, A. S., Watson, G. M. F., Chen, S., Dermaur, A. A., O'Hara, B. P., Wood, S. P., Mann, N. H., Barnett, L. K. & Ellis, R. J. (1993) Curr. Biol. 3, 265-273.
66. Chen, S., Roseman, A. M., Hunter, A. S., Wood, S. P., Burston, S. G., Ranson, N. A., Clarke, A. R. & Saibil, H. R. (1994) Nature (London) 371, 261-264.
67. Hunt, J. F., Weaver, A. J., Landry, S. J., Gierasch, L. & Deisenhofer, J. (1996) Nature (London) 379, 39-45.
68. Mande, S. C., Mehra, V., Bloom, B. R. & Hol, W. G. J. (1996) Science 271, 203-207.
69. Evans, S. V. (1993) J. Mol. Graphics 11, 134-138.