mtDNA diversity analysis in Amerindians and other human populations - How different are they?

Brazilian Journal of Genetics

Volumn 19, Issue 3, 1996, Pages 527-534

  Bortolini, Maria Cátira ^a   Salzano, Francisco M ^a  

^a FEDERAL UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

AMERICAN INDIAN; BIODIVERSITY; DATA ANALYSIS; ETHNIC DIFFERENCE; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; POPULATION GENETICS; REVIEW;

EID: 0029827352     PISSN: 01008455     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (57)

1. Anderson, S., Bankier, A.T., Barrel, B.G., DeBulin, M.H.L., Coulson, A.R., Drouin, J., Eperon, I.C., Nierlich, D.P., Roe, B.A., Sanger, F., Schreier, P.H., Staden, R. and Young, I.G. (1981). Sequence and organization of the human mitochondrial genome. Nature 290: 457-465.
2. Bailliet, G., Rothhammer, F., Carnese, F.R., Bravi, C.M. and Bianchi, N.O. (1994). Founder mitochondrial haplotypes in Amerindian populations. Am. J. Hum. Genet. 55: 27-33.
3. Barrantes, R. (1993). Evolución en el Trópico: Los Amerindios de Costa Rica y Panamá. Editorial de la Universidad de Costa Rica, San José, pp. 221.
4. Barrantes, R., Smouse, P.E., Mohrenweiser, H.W., Gershowitz, H., Azofeifa, J., Arias, T.D. and Neel, J.V. (1990). Microevolution in Lower Central America: genetic characterization of the Chibcha-speaking groups of Costa Rica and Panama, and a consensus taxonomy based on genetic and linguistic affinity. Am. J. Hum. Genet. 46: 63-84.
5. Batista, O., Kolman, C.J. and Bermingham, E. (1995). Mitochondrial DNA diversity in the Kuna Amerinds in Panamá. Hum. Mol. Genet. 4: 921-929.
6. Bevilaqua, L.M., Mattevi, V., Ewald, G.M., Salzano, F.M., Coimbra Jr., E.A., Santos, R.V. and Hutz, M.H. (1995). Beta globin gene cluster haplotype distribution in five Brazilian Indian tribes. Am. J. Phys. Anthropol. 98: 395-401.
7. Bianchi, N.O., Bailliet, G. and Bravi, C.M. (1995). Peopling of the Americas as inferred through the analysis of mitochondrial DNA. Braz. J. Genet. 18: 661-668.
8. Bonatto, S.L., Redd, A.J., Salzano, F.M. and Stoneking, M. (1996). Lack of ancient Polynesian-Amerindian contact. Am. J. Hum. Genet. 59: 253-256.
9. Bortolini, M.C., Weimer, T.A., Salzano, F.M., Callegari-Jacques, S.M., Schneider, H., Layrisse, Z. and Bonatto, S.L. (1995). Evolutionary relationships between Black South American and African populations. Hum. Biol. 67: 547-559.
10. Bortolini, M.C., Weimer, T.A., Salzano, F.M., Moura, L.B. and da Silva, M.C.B.O. Genetic structure of two urban Afro-Brazilian populations. Intern. J. Anthropol. (in press).
11. Cavalli-Sforza, L.L., Menozzi, P. and Piazza, A. (1994). The History and Geography of Human Genes. Princeton University Press, Princeton, pp. 541.
12. Chakraborty, R. and Weiss, K.M. (1991). Genetic variation of the mitochondrial DNA genome in American Indians is at mutation-drift equilibrium. Am. J. Phys. Anthropol. 86: 497-506.
13. Chen, Y., Torroni, A., Excoffier, L., Santachiara-Benerecetti, A.S. and Wallace, D.C. (1995). Analysis of mtDNA variation in African populations reveals the most ancient of all human continent-specific haplogroups. Am. J. Hum. Genet. 57: 133-149.
14. Deka, R., DeCroo, S., Jin, L., McGrarvey, S.T., Rothhammer, F., Ferrel, R.E. and Chakraborty, R. (1994). Population genetic characteristics of the D1S80 locus in seven human populations. Hum. Genet. 94: 252-258.
15. Deka, R., Shriver, M.D., Yu, L.M., Ferrel, R.E. and Chakraborty, R. (1995). Infra and inter population diversity at short tandem repeat loci in diverse populations of the world. Electrophoresis 16: 1659-1664.
16. Franco, R.R., Simões, B., Guerreiro, J.F., Santos, S.E.B. and Zago, M.A. (1994). Molecular bases of the ABO blood groups of Indians from the Brazilian Amazon region. Vox. Sang. 67: 299-301.
17. Garber, T.L., McAdam, S.N., Butler, L.M., Crocker, P., Piekarczyk, M., Troup, G.M., Milford, E.L. and Watkins, D.I. (1996). HLA-B alleles of Navajo: No evidence for rapid evolution in the Na-Dene. Tissue Antigens 47: 143-146.
18. Ginther, C., Corach, D., Penacino, G.A., Rey, J.A., Carnese, F.R., Hutz, M.H., Anderson, A., Just, J., Salzano, F.M. and King, M.-C. (1993). Genetic variation among the Mapuche Indians from the Patagonian region of Argentina: Mitochondrial DNA sequence variation and allele frequencies of several nuclear genes. In: DNA Fingerprinting: State of the Science (Pena, S.D.J., Chakraborty, R., Epplen, J.T. and Jeffreys, A.J., eds.). Birkhäuser Verlag, Basel, pp. 211-219.
19. Greenberg, J.H. (1987). Language in the Americas. Stanford University Press, Stanford, pp. 438.
20. Guedez, Y.B., Layrisse, Z., Dominguez, E., Rodriguez-Larralde, A. and Scorza, J. (1994). Molecular analysis of MHC class II alleles and haplotypes ( DRB1, DQA1 and DQB1) in Bari Amerindians. Tissue Antigens 44: 125-128.
21. Guerreiro, J.F., Figueiredo, M.S., Santos, S.E.B. and Zago, M.A. (1992). β-globin gene cluster haplotypes in Yanomama Indians from the Amazon region of Brazil. Hum. Genet. 89: 629-631.
22. Heidrich, E.M., Hutz, M.H., Salzano, F.M., Coimbra Jr., C.E.A. and Santos, R.V. (1995). D1S80 locus variability in three Brazilian ethnic groups. Hum. Biol. 67: 311-319.
23. Horai, S., Kondo, N., Nakagawa-Hattori, J., Hayashi, S., Sonoda, S. and Tajima, K. (1993). Peopling of the Americas, founded by four major lineages of mitochondrial DNA. Mol. Biol. Evol. 10: 23-47.
24. Kolman, C.J., Bermingham, E., Cooke, R., Ward, R.H., Arias, T.D. and Guionneau-Sinclair, F. (1995). Reduced mtDNA diversity in the Ngöbé Amerinds of Panamá. Genetics 140: 275-283.
25. Kunst, C.B., Zerrylnick, C., Karickhoff, L., Eichler, E., Bullard, J., Chalifoux, M., Holden, A., Torroni, A., Nelson, D.L. and Warren, S.T. (1996). FMR1 in global populations. Am. J. Hum. Genet. 58: 513-522.
26. Livshits, G. and Nei, M. (1990). Relationships between intrapopulational and interpopulational genetic diversity in man. Ann. Hum. Biol. 6: 501-513.
27. Merriwether, D.A., Rothhammer, F. and Ferrel, R.E. (1994). Genetic variation in the New World: ancient teeth, bone, and tissue as sources of DNA. Experientia 50: 592-601.
28. Merriwether, D.A., Rothhammer, F. and Ferrel, R.E. (1995). Distribution of the four founding lineage haplotypes in Native Americans suggests a single wave of migration for the New World. Am. J. Phys. Anthropol. 98: 411-430.
29. Monsalve, M.V., Groot de Restrepo, H., Espinel, A., Correal, G. and Devine, D.V. (1994). Evidence of mitochondrial DNA diversity in South American aboriginals. Ann. Hum. Genet. 58: 265-273.
30. Nei, M. (1986). Definition and estimation of fixation indices. Evolution 40: 643-645.
31. Nei, M. (1987). Molecular Evolutionary Genetics. Columbia University Press, New York, pp. 512.
32. Ota, T. (1993). DISPAN: Genetic and Phylogenetic Analysis. University Park, Institute of Molecular Evolutionary Genetics, The Pennsylvania State University, Pennsylvania.
33. Parr, R.L., Carlyle, S.W. and O'Rourke, D.H. (1996). Ancient DNA analysis of Fremont Amerindians of the Great Salt Lake Wetlands. Am. J. Hum. Genet. 99: 507-518.
34. Pena, S.D.J., Santos, F.R., Bianchi, N., Bravi, C., Carnese, F.R., Rothhammer, F., Gerelsaikhan, T., Munkhtuja, B. and Oyunsuren, T. (1995). A major founder Y-chromosome haplotype in Amerindians. Nat. Genet. 11: 15-16.
35. Petzl-Erler, M.L. and McDevitt, H.O. (1994). Molecular analysis of the HLA-DRB genes in two tribes of Brazilian Indians. Hum. Immunol. 41: 180-184.
36. Rothhammer, F. and Bianchi, N.O. (1995). Origin and distribution of B mtDNA lineage in South America. Am. J. Hum. Genet. 56: 1247-1248.
37. Salzano, F.M. and Callegari-Jacques, S.M. (1988). South American Indians: A Case Study in Evolution. Oxford University Press, Oxford, pp. 259.
38. Santos, F.R., Hutz, M.H., Coimbra Jr., C.E.A., Santos, R.V., Salzano, F.M. and Pena, S.D.J. (1995). Further evidence for the existence of a major founder Y-chromosome haplotype in Amerindians. Braz. J. Genet. 18: 669-672.
39. Santos, F.R., Gerelsaikhan, T., Munkhtuja, B., Oyunsuren, T., Epplen, J.T. and Pena, S.D.J. (1996). Geographic differences in the allele frequencies of the human Y-linked tetranucleotide polymorphism DYS19. Hum. Genet. 97: 309-313.
40. Schurr, T.G., Ballinger, S.W., Gan, Y.Y., Hodge, J.A., Merriwether, D.A., Lawrence, D.N., Knowler, W.C., Weiss, K.M. and Wallace, D.C. (1990). Amerindian mitochondrial DNAs have rare Asian mutations at high frequencies, suggesting they derived from four primary maternal lineages. Am. J. Hum. Genet. 46: 613-623.
41. Shields, G., Shmiecken, A.M., Frazier, B.L., Redd, A., Voevoda, M.I., Reed, J.K. and Ward, R.H. (1993). mtDNA sequences suggest a recent evolutionary, divergence for Beringian and northern North American populations. Am. J. Hum. Genet. 53: 549-562.
42. Szathmary, E.J.E. (1983). Dogrib Indians of the Northwest Territories, Canada: Genetic diversity and genetic relationship among subarctic Indians. Ann. Hum. Biol. 10: 147-162.
43. Szathmary, E.J.E., Wilson, C.D., Gershowitz, H., Rucknagel, D.L. and Schanfield, M.S. (1974). The northern and southern Ojibwa: serum proteins and red cell enzyme systems. Am. J. Phys. Anthropol. 40: 49-66.
44. Torroni, A. and Wallace, D.C. (1995). mtDNA haplotypes in native Americans. Am. J. Hum. Genet. 56: 1234-1238.
45. Torroni, A., Schurr, T.G., Yang, C.C., Szathmary, E.J.E., Williams, R.C., Schanfield, M.S., Troup, G.A., Knowler, W.C., Lawrence, D.N., Weiss, K.M. and Wallace, D.C. (1992). Native American mitochondrial DNA analysis indicates that the Amerind and the Na-Dene populations were founded by two independent migrations. Genetics 130: 153-162.
46. Torroni, A., Schurr, T.G., Cabell, M.F., Brown, M.D., Neel, J.V., Larsen, M., Smith, D.G., Vullo, C.M. and Wallace, D.C. (1993a). Asian affinities and continental radiation of the four founding native American mtDNAs. Am. J. Hum. Genet. 53: 563-590.
47. Torroni, A., Sukernik, R.I., Schurr, T.G., Stavikovskaya, Y.B., Cabell, M.F., Crawford, M.H., Comuzzie, A.G. and Wallace, D.C. (1993b). mtDNA variation of aboriginal Siberians reveals distinct genetic affinities with native Americans. Am. J. Hum. Genet. 53: 591-608.
48. Torroni, A., Chen, Y., Semino, O., Santachiara-Beneceretti, A.S., Scott, C.R., Lott, M., Winter, M. and Wallace, D.C. (1994a). mtDNA and Y chromosome polymorphisms in four native American populations from southern Mexico. Am. J. Hum. Genet. 54: 303-318.
49. Torroni, A., Lott, M.T., Cabell, M.F., Chen, Y., Lavergne, L. and Wallace, D.C. (1994b). mtDNA and the origin of Caucasians: Identification of ancient Caucasian-specific haplogroups, one of which is prone to a recurrent somatic duplication in the D-loop region. Am. J. Hum. Genet. 55: 760-776.
50. Wallace, D.C. and Torroni, A. (1992). American Indian pre-history as written in the mitochondrial DNA: A review. Hum. Biol. 64: 403-416.
51. Wallace, D.C., Garrison, K. and Knowler, W.C. (1985). Dramatic founder effects in Amerindian mitochondrial DNAs. Am. J. Phys. Anthropol. 68: 149-155.
52. Ward, R.H., Frazier, B.L., Dew-Jager, K. and Pääbo, S. (1991). Extensive mitochondrial diversity within a single Amerindian tribe. Proc. Natl. Acad. Sci. USA 88: 8720-8724.
53. Ward, R.H., Redd, A., Valencia, D., Frazier, B. and Pääbo, S. (1993). Genetic and linguistic differentiation in the Americas. Proc. Natl. Acad. Sci. USA 90: 10663-10667.
54. Ward, R.H., Salzano, F.M., Bonatto, S.L., Hutz, M.H., Coimbra Jr., C.E.A. and Santos, R.V. (1996). Mitochondrial DNA polymorphism in three Brazilian Indian tribes. Am. J. Hum. Biol. 8: 317-323.
55. Williams, R.C., Steinberg, A.G., Gershowitz, H., Bennett, P.H., Knowler, W.C., Pettitt, D.J., Butler, W., Baird, W., Dowda-Rea, I., Burch, T.A., Morse, H.G. and Smith, C. (1985). GM allotypes in Native Americans: Evidence for three distinct migration across the Bering land bridge. Am. J. Phys. Anthropol. 66: 1-19.
56. Yunis, J.J., Ossa, H., Salazar, M., Delgado, M.B., Deulofeut, A.H., Bing, D.H., Ramos, O., Yunis, E.J. and Yunis, E.J. (1994). Major histocompatibility complex Class II alleles and haplotypes and blood groups of four Amerindian tribes of Northern Colombia. Hum. Immunol. 41: 248-258.
57. Zago, M.A., Silva Jr., W.A., Tavella, M.H., Santos, S.E.B., Guerreiro, J.F. and Figueiredo, M.S. (1996). Interpopulational and intrapopulational genetic diversity of Amerindians as revealed by six variable number of tandem repeats. Hum. Hered. 46: 274-289.