Analysis of rate-determining conformational changes during self-splicing of the Tetrahymena intron

Biochemistry

Volumn 35, Issue 41, 1996, Pages 13469-13477

  Emerick, Victoria L ^a,b   Pan, Jie ^a   Woodson, Sarah A ^a  

^a University of Maryland   (United States)

^b GLAXOSMITHKLINE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA;

ARTICLE; GENE REARRANGEMENT; INTRON; NONHUMAN; PRIORITY JOURNAL; RNA CONFORMATION; RNA SPLICING; TETRAHYMENA;

ALTERNATIVE SPLICING; ANIMALS; BASE SEQUENCE; EXONS; GUANOSINE TRIPHOSPHATE; INTRONS; KINETICS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA PRECURSORS; RNA SPLICING; RNA, PROTOZOAN; TETRAHYMENA THERMOPHILA;

TETRAHYMENA;

EID: 0029800606     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi960865i     Document Type: Article

References (51)

1. Banerjee, A. R., Jaeger, J. A., & Turner, D. H. (1993) Biochemistry 32, 153-163.
2. Bass, B., & Cech, T. R. (1984) Nature 308, 820-826.
3. Been, M. D., & Cech, T. R. (1986) Cell 47, 207-216.
4. Been, M. D., & Perrotta, A. T. (1991) Science 252, 434-437.
5. Been, M. D., Perrotta, A. T., & Rosenstein, S. P. (1992) Biochemistry 31, 11843-11952.
6. Bevilacqua, P. C., Kierzek, R., Johnson, K. A., & Turner, D. H. (1992) Science 258, 1355-1358.
7. Bevilacqua, P. C., Sugimoto, N., & Turner, D. H. (1996) Biochemistry 35, 648-658.
8. Burke, J. M. (1988) Gene 73, 273-294.
9. Cantor, C. R., & Schimmel, P. R. (1980) Biophysical Chemistry, pp 889-891, W. H. Freeman, San Francisco.
10. Cech, T. R., & Bass, B. L. (1986) Annu. Rev. Biochem, 55, 599-629.
11. Cech, T. R., Herschlag, D., Piccirilli, J. A., & Pyle, A. M. (1992) J. Biol. Chem. 267, 17479-17482.
12. Celander, D. W., & Cech, T. R. (1991) Science 251, 401-407.
13. Chebli, K., Gattoni, R., Schmitt, P., Hildwein, G., & Stevenin, J. (1989) Mol. Cell. Biol. 9, 4852-4861.
14. Crothers, D. M., Cole, P. E., Hilbers, C. W., & Shulman, R. G. (1974) J. Mol. Biol. 87, 63-88.
15. Dammel, C. S., & Noller, H. F. (1993) Genes Dev. 5, 2521-2532.
16. D'Orval, B. C., Carafa, Y. D., Sirand-Pugnet, P., Gallego, M., Brody, E., & Marie, J. (1991) Science 252, 1823-1828.
17. Emerick, V. L. (1995) Ph.D. Thesis, University of Maryland, College Park.
18. Emerick, V. L., & Woodson, S. A. (1993) Biochemistry 32, 14062-14067.
19. Emerick, V. L., & Woodson, S. A. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 9675-9679.
20. Eng, F. J., & Warner, J. R. (1991) Cell 65, 797-804.
21. Fedor, M. J., & Uhlenbeck, O. C. (1990) Proc. Natl Acad. Sci. U.S.A. 87, 1668-1672.
22. Fortner, D. M., Troy, R. G., & Brow, D. A. (1994) Genes Dev. 8, 221-223.
23. Freier, S. M., Kierzek, R., Caruthers, M. H., Neilson, T., & Turner, D. H. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 9373-9377.
24. Golden, B. L., & Cech, T. R. (1996) Biochemistry 35, 3754-3763.
25. Herschlag, D. (1992) Biochemistry 31, 1386-1399.
26. Herschlag, D., & Cech, T. R. (1990) Biochemistry 29, 10159-10171.
27. Herschlag, D., & Khosla, M. (1994) Biochemistry 33, 5291-5297.
28. Inoue, T., Sullivan, F. X., & Cech, T. R. (1985) Cell 43, 431-437.
29. Kunkel, T. A., Roberts, J. D., & Zakour, R. A. (1987) Methods. Enzymol. 154, 367-382.
30. Li, Y., Bevilacqua, P. C., Mathews, D., & Turner, D. H. (1996) Biochemistry (in press).
31. Libri, D., Piseri, A., & Fiszman, M. Y. (1991) Science 252, 1842-1845.
32. McConnell, T. S., & Cech, T. R. (1995) Biochemistry 34, 4056-4067.
33. McConnell, T. S., Cech, T. R., & Herschlag, D. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 8362-8366.
34. Mei, R., & Herschlag, D. (1996) Biochemistry 35, 5796-5809.
35. Olender, D. L., Zurawski, G., & Yanofsky, C. (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 5524-5528.
36. Pyle, A. M., McSwiggen, J. A., & Cech, T. R. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 8187-8191.
37. Pyle, A. M., Murphy, F. L., & Cech, T. R. (1992) Nature 358, 123-128.
38. Pyle, A. M., Moran, S., Strobel, S. A., Chapman, T., Turner, D. H., & Cech, T. R. (1994) Biochemistry 33, 13856-13863.
39. Séraphin, B., Simon, M., & Faye, G. (1988) EMBO J. 7, 1455-1464.
40. Strobel, S. A., Cech, T. R., Usman, N., & Beigelman, L. (1995) Science 267, 675-678.
41. Szabó, Z. G. (1969) in Comprehensive Chemical Kinetics (Bamford, C. H., & Tipper, C. F. H., Eds.) Vol. 2, pp 24-26, Elsevier, Amsterdam.
42. Thirumalai, D., & Woodson, S. A. (1996) Acc. Chem. Res. (in press).
43. Walstrum, S., & Uhlenbeck, O. C. (1990) Biochemistry 29, 10573-10576.
44. Williamson, C. L., Tierney, W. M., Keiker, B. J., & Burke, J. M. (1987) J. Biol. Chem. 262, 14672-14682.
45. Woodson, S. A. (1992) Nucleic Acids Res. 20, 4027-4032.
46. Woodson, S. A., & Cech, T. R. (1989) Cell 57, 335-345.
47. Woodson, S. A., & Cech, T. R. (1991) Biochemistry 30, 2042-2050.
48. Woodson, S. A., & Emerick, V. L. (1993) Mol. Cell. Biol. 13, 1137-1145.
49. Zarrinkar, P. P., & Williamson, J. R. (1994) Science 265, 918-924.
50. Zaug, A. J., & Cech, T. R. (1986) Science 231, 470-475.
51. Zavanelli, M. I., & Ares, M. Jr. (1991) Genes Dev. 5, 660-670.