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Volumn 71, Issue 3, 1996, Pages 1222-1227

Crystal structure of the self-complementary 5'-purine start decamer d(GCACGCGTGC) in the A-DNA conformation. II

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; PURINE;

EID: 0029758960     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(96)79351-7     Document Type: Article
Times cited : (16)

References (26)
  • 1
    • 0028350664 scopus 로고
    • A single 2′-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet
    • Ban, C., B. Ramakrishnan, and M. Sundaralingam, 1994a. A single 2′-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet. J. Mol. Biol. 236: 275-285.
    • (1994) J. Mol. Biol. , vol.236 , pp. 275-285
    • Ban, C.1    Ramakrishnan, B.2    Sundaralingam, M.3
  • 2
    • 0028618356 scopus 로고
    • Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G)-spermine complex-spermine binding to phosphate only and minor groove tertiary base-pairing
    • Ban, C., B. Ramakrishnan, and M. Sundaralingam, 1994b. Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G)-spermine complex-spermine binding to phosphate only and minor groove tertiary base-pairing. Nucleic Acids Res. 22:5466-5476.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5466-5476
    • Ban, C.1    Ramakrishnan, B.2    Sundaralingam, M.3
  • 3
    • 0029758132 scopus 로고    scopus 로고
    • Crystal structure of the self-complementary 5′-purine start decamer d(GCGCGCGCGC) in the Z-DNA conformation I
    • Ban, C, B. Ramakrishnan, and M. Sundaralingam, 1996. Crystal structure of the self-complementary 5′-purine start decamer d(GCGCGCGCGC) in the Z-DNA conformation I. Biophys. J. 71:1215-1221.
    • (1996) Biophys. J. , vol.71 , pp. 1215-1221
    • Ban, C.1    Ramakrishnan, B.2    Sundaralingam, M.3
  • 4
    • 0027048948 scopus 로고
    • Crystal and molecular structure of d(GTGCGCAC): Investigation of the effects of base sequence on the conformation of octamer duplexes
    • Bingman, C., X, Li. G. Zon, and M. Sundaralingam, 1992. Crystal and molecular structure of d(GTGCGCAC): investigation of the effects of base sequence on the conformation of octamer duplexes. Biochemistry. 31:12,803-12,813.
    • (1992) Biochemistry , vol.31 , pp. 12803-12813
    • Bingman, C.1    Li, X.2    Zon, G.3    Sundaralingam, M.4
  • 7
    • 0020385863 scopus 로고
    • Mechanics of sequence dependent bases in B-DNA
    • Calladine, C. R. 1982. Mechanics of sequence dependent bases in B-DNA. J. Mol. Biol. 161:343-352.
    • (1982) J. Mol. Biol. , vol.161 , pp. 343-352
    • Calladine, C.R.1
  • 11
    • 0019318942 scopus 로고
    • High-salt d(CpGpCpG), a left-handed Z′ DNA double helix
    • Drew, H., T. Takano, K. Itakura, and R. E. Dickerson. 1980. High-salt d(CpGpCpG), a left-handed Z′ DNA double helix. Nature (London). 286:567-573.
    • (1980) Nature (London) , vol.286 , pp. 567-573
    • Drew, H.1    Takano, T.2    Itakura, K.3    Dickerson, R.E.4
  • 14
    • 85030274618 scopus 로고
    • Genex Corporation, Gaithersburg, MD
    • Howard, A. J. 1990. XENGEN manual, v2.1. Genex Corporation, Gaithersburg, MD.
    • (1990) XENGEN Manual, V2.1
    • Howard, A.J.1
  • 15
    • 84988072575 scopus 로고
    • Abbreviations and symbols for the description of conformations of polynucleotide chains
    • IUPAC-IUB Joint Commission in Biochemistry Nomenclature. 1983. Abbreviations and symbols for the description of conformations of polynucleotide chains. Eur. J. Biochem. 131:9-15.
    • (1983) Eur. J. Biochem. , vol.131 , pp. 9-15
  • 16
    • 0023645483 scopus 로고
    • The potentially Z-DNA-forming sequence d(GTGTACAC) crystallizes as A-DNA
    • Jain, S. C., G. Zon, and M. Sundaralingam. 1987. The potentially Z-DNA-forming sequence d(GTGTACAC) crystallizes as A-DNA. J. Mol. Biol. 197:141-145.
    • (1987) J. Mol. Biol. , vol.197 , pp. 141-145
    • Jain, S.C.1    Zon, G.2    Sundaralingam, M.3
  • 18
    • 0029076479 scopus 로고
    • Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA
    • Mooers, B. H. M., G. P, Schroth, W. W. Baxter, and P. S. Ho. 1995. Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. J. Mol. Biol. 249:772-784.
    • (1995) J. Mol. Biol. , vol.249 , pp. 772-784
    • Mooers, B.H.M.1    Schroth, G.P.2    Baxter, W.W.3    Ho, P.S.4
  • 19
    • 0021770610 scopus 로고
    • Short oligodeoxynucleotides with d(G-C)n sequence do not assume left-handed conformation in high salt conditions
    • Quadrifoglio, F., G. Manzini, and N. Yathindra. 1984. Short oligodeoxynucleotides with d(G-C)n sequence do not assume left-handed conformation in high salt conditions. J. Mol. Biol. 175:419-423.
    • (1984) J. Mol. Biol. , vol.175 , pp. 419-423
    • Quadrifoglio, F.1    Manzini, G.2    Yathindra, N.3
  • 20
    • 0027522094 scopus 로고
    • Evidence for crystal environment dominating base sequence effects on DNA conformation: Crystal structures of the orthorhombic and hexagonal polymorphous of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures
    • Ramakrishnan, B., and M. Sundaralingam. 1993a. Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphous of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures. Biochemistry, 32:11,458-11,468.
    • (1993) Biochemistry , vol.32 , pp. 11458-11468
    • Ramakrishnan, B.1    Sundaralingam, M.2
  • 21
    • 0027173244 scopus 로고
    • High resolution crystal structure of the A-DNA decamer d(CCCGGCCGGG). Novel intermolecular base-paired G*(G-C) triplets
    • Ramakrishnan, B., and M. Sundaralingam. 1993b. High resolution crystal structure of the A-DNA decamer d(CCCGGCCGGG). Novel intermolecular base-paired G*(G-C) triplets. J. Mol. Biol. 231:431-444.
    • (1993) J. Mol. Biol. , vol.231 , pp. 431-444
    • Ramakrishnan, B.1    Sundaralingam, M.2
  • 22
    • 0029097869 scopus 로고
    • Crystal structure of the A-DNA decamer d(CCIGGCCm5CGG) at 1.6 Å showing the unexpected wobble I.m5C base pair
    • Ramakrishnan, B., and M. Sundaralingam. 1995. Crystal structure of the A-DNA decamer d(CCIGGCCm5CGG) at 1.6 Å showing the unexpected wobble I.m5C base pair. Biophys. J. 69:553-558.
    • (1995) Biophys. J. , vol.69 , pp. 553-558
    • Ramakrishnan, B.1    Sundaralingam, M.2
  • 23
    • 0021103971 scopus 로고
    • Sequence-dependent conformation of an A-DNA double-helix. The crystal structure of the octamer d(GGTAT-ACC)
    • Shakked, Z., D. Rabinovich, O. Kennard, W. B. Cruse, S. A. Salisbury, and M. A. Viswamitra. 1983. Sequence-dependent conformation of an A-DNA double-helix. The crystal structure of the octamer d(GGTAT-ACC). J. Mol. Biol. 166:183-201.
    • (1983) J. Mol. Biol. , vol.166 , pp. 183-201
    • Shakked, Z.1    Rabinovich, D.2    Kennard, O.3    Cruse, W.B.4    Salisbury, S.A.5    Viswamitra, M.A.6
  • 24
    • 0000544965 scopus 로고
    • High-resolution refinement of the hexagonal A-DNA octamer d(GTGTA-CAC) at 1.4 Å
    • Thota, N., X. H. Li, G. Bingman, and M. Sundaralingam. 1993. High-resolution refinement of the hexagonal A-DNA octamer d(GTGTA-CAC) at 1.4 Å. Acta Cryst. D 49:282-291.
    • (1993) Acta Cryst. D , vol.49 , pp. 282-291
    • Thota, N.1    Li, X.H.2    Bingman, G.3    Sundaralingam, M.4
  • 25
    • 0021227193 scopus 로고
    • AT base pairs are less stable than GC base pairs in Z-DNA: The crystal structure of d(m(5)CGTAm(5)CG)
    • Wang, A. H.-J., T. Hakoshima, G. A. van der Marel, J. H. van Boom, and A. Rich. 1984. AT base pairs are less stable than GC base pairs in Z-DNA: the crystal structure of d(m(5)CGTAm(5)CG). Cell. 37: 321-331.
    • (1984) Cell , vol.37 , pp. 321-331
    • Wang, A.H.-J.1    Hakoshima, T.2    Van Der Marel, G.A.3    Van Boom, J.H.4    Rich, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.