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Volumn 1848, Issue , 2000, Pages 335-349

Using suffix trees for gapped motif discovery_

Author keywords

[No Author keywords available]

Indexed keywords

DNA SEQUENCES; PATTERN MATCHING;

EID: 0013025269     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/3-540-45123-4_28     Document Type: Conference Paper
Times cited : (5)

References (14)
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    • Springer LNCS 644
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    • (1992) Proc. 3Rd Symp. On Combinatorial Pattern Matching , pp. 175-184
    • Chang, W.I.1    Lampe, J.2
  • 2
    • 0021760002 scopus 로고
    • Fast Optimal Alignment
    • Fickett, J.W., Fast Optimal Alignment. Nucl. Acids Res., 12:175-80, 1984
    • (1984) Nucl. Acids Res. , vol.12 , pp. 175-180
    • Fickett, J.W.1
  • 4
    • 38249042384 scopus 로고
    • Efficient string matching with k mismatches
    • Landau, G.M., Vishkin, U., Efficient string matching with k mismatches. Theor. Comp. Sci., 43:239-49, 1986
    • (1986) Theor. Comp. Sci. , vol.43 , pp. 239-249
    • Landau, G.M.1    Vishkin, U.2
  • 5
    • 0027912333 scopus 로고
    • Detecting Subtle Sequence Signals: A Gibbs Sampling Strategy for Multiple Alignment
    • 8 October
    • Lawrence, C., Altschul, S., Boguski, M., Liu, J., Neuwald, A., Wootton, J. Detecting Subtle Sequence Signals: A Gibbs Sampling Strategy for Multiple Alignment. Science, 262:208-214, 8 October 1993
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.1    Altschul, S.2    Boguski, M.3    Liu, J.4    Neuwald, A.5    Wootton, J.6
  • 6
    • 0033721648 scopus 로고    scopus 로고
    • Extracting Structured Motifs Using a Suffix Tree— Algorithms and Application to Promoter Consensus Identification
    • Marsan, L., Sagot, M.F., Extracting Structured Motifs Using a Suffix Tree— Algorithms and Application to Promoter Consensus Identification. To appear in Proceedings of RECOMB 2000
    • (2000) To Appear in Proceedings of RECOMB
    • Marsan, L.1    Sagot, M.F.2
  • 7
    • 33745128489 scopus 로고
    • An O(Nd) Difference Algorithm and Its Variations
    • Meyers, E.W., An O(nd) Difference Algorithm and Its Variations. Algorithmica, 1:251-66, 1986
    • (1986) Algorithmica , vol.1 , pp. 251-266
    • Meyers, E.W.1
  • 9
    • 80053455778 scopus 로고    scopus 로고
    • Spelling Approximate Repeated or Common Motifs Using a Suffix Tree
    • Sagot, M-F., Spelling Approximate Repeated or Common Motifs Using a Suffix Tree. Proceedings of LATIN, 374-390, 1998
    • (1998) Proceedings of LATIN , pp. 374-390
    • Sagot, M.-F.1
  • 10
    • 84937422910 scopus 로고
    • Identification of Common Molecular Subsequences
    • Smith, T.F., Waterman, M.S., Identification of Common Molecular Subsequences. J. Mol. Biol., 284:1-18, 1995
    • (1995) J. Mol. Biol. , vol.284 , pp. 1-18
    • Smith, T.F.1    Waterman, M.S.2
  • 12
    • 0001704377 scopus 로고
    • On-line Construction of Suffix-Trees
    • Ukkonen, E., On-line Construction of Suffix-Trees. Algorithmica, 14:249-60, 1995
    • (1995) Algorithmica , vol.14 , pp. 249-260
    • Ukkonen, E.1
  • 13
    • 0020494998 scopus 로고
    • Algorithms for Approximate String Matching
    • Ukkonen, E., Algorithms for Approximate String Matching. Information Control, 64:100-18, 1985
    • (1985) Information Control , vol.64 , pp. 100-118
    • Ukkonen, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.