Tagging and mapping of genes and QTL and molecular marker-assisted selection for traits of economic importance in bean and cowpea

Field Crops Research

Volumn 82, Issue 2-3, 2003, Pages 135-154

  Kelly, J D ^a   Gepts, P ^b   Miklas, P N ^c   Coyne, D P ^d  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c WASHINGTON STATE UNIVERSITY   (United States)

^d UNIVERSITY OF NEBRASKA LINCOLN   (United States)

Author keywords

Disease resistance; Domestication; Epistasis; Indirect selection; Introgression; Linkage; Pathogens; Phaseolus vulgaris; Plant breeding; Vigna unguiculata

Indexed keywords

BACTERIA; DISEASES; FUNGI; GENES; PROTEINS; SEED;

MOLECULAR MARKERS;

CROPS;

AGRICULTURAL RESEARCH; CULTIVAR; DOMESTIC SPECIES; GERMPLASM; LEGUME; MAPPING; TAGGING;

BACTERIA; DISEASES; FARM CROPS; FUNGI; GENES; PROTEINS; SEEDS;

BACTERIA (MICROORGANISMS); INSECTA; PHASEOLUS (ANGIOSPERM); PHASEOLUS VULGARIS; VIGNA; VIGNA UNGUICULATA;

EID: 0012764080     PISSN: 03784290     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-4290(03)00034-0     Document Type: Review

References (157)

1. Adam-Blondon, A., Sévignac, M., Dron, M., 1994. A genetic map of common bean to localize specific resistance genes against anthracnose. Genome 37, 915-924.
2. Alzate-Marin, A.L., Costa, M.R., Arruda, K.M., de Barros, E.G., Moreira, M.A., 2003. Characterization of the anthracnose resistance locus present in cultivar Ouro Negro (Honduras 35). Euphytica (in press).
3. Ariyarathne, H.M., Coyne, D.P., Jung, G., Skroch, P.W., Vidaver, J.R., Steadman, A.K., Miklas, P.N., Bassett, M.J., 1999. Molecular mapping of disease resistance genes for halo blight, common bacterial blight, bean common mosaic virus in a segregating population of common bean. J. Am. Soc. Hort. Sci. 124, 654-662.
4. Arndt, G.C., Gepts, P., 1989. Segregation and linkage for morphological and biochemical markers in a wide cross in common bean (Phaseolus vulgaris). Annu. Rep. Bean Improv. Coop. 32, 68-69.
5. 2 gene in common bean. Annu. Rep. Bean Improv. Coop. 44, 119-120.
6. Bai, Y., Michaels, T.E., Pauls, K.P., 1997. Identification of RAPD markers linked to common bacterial blight resistance genes in Phaseolus vulgaris L. Genome 40, 544-551.
7. Balardin, R.S., Kelly, J.D., 1998. Interaction between races of Colletotrichum lindemuthianum and gene pool diversity in Phaseolus vulgaris. J. Am. Soc. Hort. Sci. 123, 1038-1047.
8. Balardin, R.S., Jarosz, A.M., Kelly, J.D., 1997. Virulence and molecular diversity in Colletotrichum lindemuthianum from South, Central and North America, Central and North America. Phytopathology 87, 1184-1191.
9. Bassett, M.J., 1988. Linkage mapping of marker genes in common bean. In: Gepts, P. (Ed.), Genetic Resources of Phaseolus Beans. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 329-353.
10. Bassett, M.J., 1991. A revised linkage map of common bean. HortScience 26, 834-836.
11. Bassett, M.J., 1996. List of genes - Phaseolus vulgaris L. Annu. Rep. Bean Improv. Coop. 39, 1-19.
12. Beaver, J.S., Kelly, J.D., 1994. Comparison of selection methods for dry bean populations derived from crosses between gene pools. Crop Sci. 34, 34-37.
13. Beaver, J.S., Macchiavelli, R., 1998. Breeding strategies for pyramiding genes for resistance. Annu. Rep. Bean Improv. Coop. 41, 141-142.
14. Beaver, J.S., Miklas, P.N., Kelly, J.D., Steadman, J.R., Rosas, J.C., 1998. Registration of PR9357-107 small red dry bean germplasm resistant to BCMV, BCMNV, and rust. Crop Sci. 38, 1408-1409.
15. Beavel, J.S., Rosas, J.C., Myers, J., Acosta, J., Kelly, J.D., Nchimbi-Msolla, S., Misangu, R., Bokosi, J., Temple, S., Coyne, D.P., 2003. Contributions of the bean/cowpea CRSP to cultivar and germplasm development in common bean. Field Crops Res. (companion article - in same FCR edition).
16. Beltrán, G.E., Jung, G., Nienhuis, J., Bassett, M.J., 2002. Identification of RAPD markers linked to five marker genes (blu, dgs, y, arg, and a flat pod mutant) in common bean. J. Am. Soc. Hort. Sci. 127, 685-688.
17. Beninger, C.W., Hosfield, G.L., Bassett, M.J., Owens, S., 2000. Chemical and morphological expression of the B and Asp seedcoat genes in Phaseolus vulgaris. J. Am. Soc. Hort. Sci. 125, 52-58.
18. Blair, M.W., Beaver, J.S., 1993. Inheritance of BGMV resistance from bean genotype A429. Annu. Rep. Bean Improv. Coop. 36, 143.
19. Boone, W.E., Stavely, J.R., Weeden, N.F., 1999. Development of a sequence-tagged site (STS) marker for the Ur-11, a gene conferring resistance to bean rust fungus, Uromyces appendiculatus. Annu. Rep. Bean Improv. Coop. 42, 33-34.
20. Concibido, V., Young, N., Lange, D., Denny, R., Danesh, D., Orf, J., 1996. Targeted comparative genome analysis and qualitative mapping of a major partial-resistance gene to the soybean cyst nematode. Theoret. Appl. Genet. 93, 234-241.
21. Corrêa, R.X., Costa, M.R., Good-God, P.I., Ragagnin, V.A., Faleiro, F.G., Moreira, M.A., de Barros, E.G., 2000. Sequence characterized amplified regions linked to rust resistance genes in the common bean. Crop Sci. 40, 804-807.
22. Coyne, D.P., 1967. Photoperiodism: inheritance and linkage studies in Phaseolus vulgaris. J. Hered. 58, 313-314.
23. Coyne, D.P., Schuster, M.L., 1974. Breeding and genetic studies of tolerance to several bean (Phaseolus vulgaris) bacterial pathogens. Euphytica 231, 651-656.
24. Crute, I., Pink, D., 1996. Genetics and utilization of pathogen resistance in plants. Plant Cell 8, 1747-1755.
25. Delaney, D.E., Bliss, F.A., 1991a. Selection for increased percentage phaseolin in common bean. 1. Comparison of selection for seed protein alleles and S1 family recurrent selection. Theoret. Appl. Genet. 81, 301-305.
26. Delaney, D.E., Bliss, F.A., 1991b. Selection for increased percentage phaseolin in common bean. 2. Changes in frequency of seed protein alleles with S1 family recurrent selection. Theoret. Appl. Genet. 81, 306-311.
27. Drijfhout, E., 1978. Genetic interaction between Phaseolus vulgaris L. and bean common mosaic virus with implications for strain identification and breeding for resistance. Agricultural Research Report No. 872. Centre for Agriculture Publishing and Documentation, Wageningen, The Netherlands, pp. 1-98.
28. Fall, A.L., Byrne, P.F., Jung, J., Coyne, D.P., Brick, M.A., Schwartz, H.F., 2001. Detection and mapping of a major locus for Fusarium wilt resistance in common bean. Crop Sci. 41, 1494-1498.
29. Fatokun, C.A., Menancio-Hautea, D.I., Danesh, D., Young, N.D., 1992. Evidence for orthologus seed weight genes in cowpea and mung bean based on RFLP mapping. Genetics 132, 841-846.
30. Fatokun, C.A., Danesh, D., Menancio-Hautea, D.I., Young, N.D., 1993. A linkage map for cowpea (Vigna unguiculata (L.) Walp.) based on DNA markers. In: O'Brien, S.J. (Ed.), Genetic Maps, 6th ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 6.257-6.258.
31. Fourie, D., Herselman, L., 2002. Breeding for common blight resistance in dry beans in South Africa. Annu. Rep. Bean Improv. Coop. 45, 50-51.
32. Freyre, R., Skroch, P.W., Geffroy, V., Adam-Blondon, A.F., Shirmohamadali, A., Johnson, W.C., Llaca, V., Nodari, R.O., Pereira, P.A., Tsai, S.-M., Tohme, J., Dron, M., Nienhuis, J., Vallejos, C.E., Gepts, P., 1998. Towards an integrated linkage map of common bean. 4. Development of a core linkage map and alignment of RFLP maps. Theoret. Appl. Genet. 97, 847-856.
33. Geffroy, V., 1997. Dissection génétique de la résistance Colletotrichum lindemuthianum, agent de l'anthracnose, chez deux génotypes représentatifs des pools géniques de Phaseolus vulgaris. Doctoral Thesis. Institut National Agronomique, Paris, Grignon.
34. Geffroy, V., Creusot, F., Falquet, J., Sévignac, M., Adam-Blondon, A.-F., Bannerot, H., Gepts, P., Dron, M., 1998. A family of LRR sequences in the vicinity of the Co-2 locus for anthracnose resistance in Phaseolus vulgaris and its potential use in marker-assisted selection. Theoret. Appl. Genet. 96, 494-502.
35. Geffroy, V., Sicard, D., de Oliveira, J.C.F., Sévignac, M., Cohen, S., Gepts, P., Neema, C., Langin, T., Dron, M., 1999. Identification of an ancestral resistance gene cluster involved in the coevolution process between Phaseolus vulgaris and its fungal pathogen Colletotrichum lindemuthianum. Mol. Plant-Microb. Interact. 12, 774-782.
36. Geffroy, V., Sévignac, M., De Oliveira, J., Fouilloux, G., Skroch, P., Thoquet, P., Gepts, P., Langin, T., Dron, M., 2000. Inheritance of partial resistance against Colletotrichum lindemuthianum in Phaseolus vulgaris and co-localization of QTL with genes involved in specific resistance. Mol. Plant-Microb. Interact. 13, 287-296.
37. Gepts, P., 1988. Provisional linkage map of common bean. Annu. Rep. Bean Improv. Coop. 31, 20-25.
38. Gepts, P., 1998. Origin and evolution of common bean, past event and recent trends, past event and recent trends. HortScience 33, 1124-1130.
39. Gepts, P., 1999. Development of an integrated linkage map. In: Singh, S.P. (Ed.), Developments in Plant Breeding. Common Bean Improvement in the Twenty-First Century. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 53-91.
40. Gepts, P., Nodari, R., Tsai, S.M., Koinange, E.M.K., Llaca, V., Gilbertson, R., Guzman, P., 1993. Linkage mapping in common bean. Annu. Rep. Bean Improv. Coop. 36, xxiv-xxxviii.
41. Haley, S.D., Miklas, P.N., Stavely, J.R., Byrum, J., Kelly, J.D., 1993. Identification of RAPD markers linked to a major rust resistance gene block in common bean. Theoret. Appl. Genet. 86, 505-512.
42. Haley, S.D., Afanador, L.K., Kelly, J.D., 1994a. Selection for monogenic resistance traits with coupling- and repulsion-phase RAPD markers. Crop Sci. 34, 1061-1066.
43. Haley, S.D., Afanador, L., Kelly, J.D., 1994b. Identification and application of a random amplified polymorphic DNA marker for the 1 gene (potyvirus resistance) in common bean. Phytopathology 84, 157-160.
44. Haley, S.D., Afanador, L.K., Miklas, P.N., Stavely, J.R., Kelly, J.D., 1994c. Heterogeneous inbred populations are useful as sources of near-isogenic lines from RAPD marker localization. Theoret. Appl. Genet. 88, 337-342.
45. He, S., Yu, Z., Vallejos, C., Mackenzie, S., 1995. Pollen fertility restoration by nuclear gene Fr in CMS common bean: an Fr linkage map and the mode of Fr action. Theoret. Appl. Genet. 90, 1056-1062.
46. Honma, S., 1956. A bean interspecific hybrid. J. Hered. 47, 217-220.
47. Ismail, A.M., Hall, A.E., Close, T.J., 1999. Allelic variation of a dehydrin gene cosegregates with chilling tolerance during seedling emergence. Proc. Natl. Acad. Sci. USA 96, 13566-13570.
48. Johnson, W., Gepts, P., 1999. Segregation for performance in recombinant inbred populations resulting from inter-gene pool crosses of common bean (Phaseolus vulgaris L.). Euphytica 106, 45-56.
49. Johnson, W., Gepts, P., 2002. The role of epistasis in controlling seed yield and other agronomic traits in an Andean x Mesoamerican cross of common bean (Phaseolus vulgaris L.). Euphytica 125, 69-79.
50. Johnson, E., Miklas, P.N., Stavely, J.R., Martinez-Cruzado, J.C., 1995. Coupling and repulsion RAPD markers for marker-assisted selection of a rust resistance gene in common bean. Theoret. Appl. Genet. 90, 659-664.
51. Johnson, W.C., Guzman, P., Mandala, D., Mkandawire, A.B.C., Temple, S., Gilbertson, R.L., Gepts, P., 1997. Molecular tagging of the bc-3 gene for introgression into Andean common bean. Crop Sci. 37, 248-254.
52. Jung, G., Coyne, D.P., Skroch, P.W., Nienhuis, J., Arnaud-Santana, E., Bokos, J., Ariyarathne, H.M., Steadman, J.R., Beaver, J.S., Kaeppler, S.M., 1996a. Molecular markers associated with plant architecture and resistance to common blight, web blight and rust in common bean (Phaseolus vulgaris L.). J. Am. Soc. Hort. Sci. 121, 794-803.
53. Jung, G., Coyne, D.P., Skroch, P., Nienhuis, J., Bokosi, J.M., Steadman, J.R., 1996b. RAPD marker linked to a gene for specific rust resistance in common bean. Annu. Rep. Bean Improv. Coop. 39, 59-60.
54. Jung, G., Skroch, P.W., Coyne, D.P., Nienhuis, J., Arnaud-Santana, E., Ariyarathne, H.M., Kaeppler, S.M., Bassett, M.J., 1997. Molecular-markers-based genetic analysis of tepary bean-derived common bacterial blight resistance in different developmental stage of common bean. J. Am. Soc. Hort. Sci. 122, 329-337.
55. Jung, G., Coyne, D.P., Bokosi, J.M., Steadman, J.R., Nienhuis, J., 1998. Mapping genes for specific and adult plant resistance to rust and abaxial leaf pubescence and their genetic relationship using random amplified polymorphic DNA (RAPD) markers in common bean. J. Am. Soc. Hort. Sci. 123, 859-863.
56. Jung, G., Skroch, P.W., Nienhuis, J., Coyne, D.P., Amaud-Santana, E., Ariyarathne, H.M., Marita, J.M., 1999. Confirmation of QTL associated with common bacterial blight resistance in four different genetic backgrounds in common bean. Crop Sci. 39, 1448-1455.
57. Kami, J., Gepts, P., 2000. Development of a BAC library in common bean genotype BAT93. Annu. Rep. Bean Improv. Coop. 43, 208-209.
58. Kelly, J.D., 1995. Use of random amplified polymorphic DNA markers in breeding for major gene resistance to plant pathogens. HortScience 30, 461-465.
59. Kelly, J.D., 1997. A review of varietal response to bean common mosaic potyvirus in Phaseolus vulgaris. Plant Varieties and Seeds 10, 1-6.
60. Kelly, J.D., Miklas, P.N., 1998. The role of RAPD markers in breeding for disease resistance in common bean. Mol. Breed. 4, 1-11.
61. Kelly, J.D., Miklas, P.N., 1999. Marker-assisted selection. In: Singh, S.P. (Ed.), Developments in Plant Breeding. Common Bean Improvement in the Twenty-First Century. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 93-123.
62. Kelly, J.D., Young, R.A., 1996. Proposed symbols for anthracnose resistance genes. Annu. Rep. Bean Improv. Coop. 39, 20-24.
63. Kelly, J.D., Afanador, L., Haley, S.D., 1995. Pyramiding genes for resistance to bean common mosaic virus. Euphytica 82, 207-212.
64. Kelly, J.D., Stavely, J.R., Miklas, P.N., 1996. Proposed symbols for rust resistance genes. Annu. Rep. Bean Improv. Coop. 39, 25-31.
65. Khairallah, M.M., Adams, M.W., Sears, B.B., 1990. Mitochondrial DNA polymorphisms of Malawian bean lines: further evidence of two major gene pools. Theoret. Appl. Genet. 80, 753-761.
66. Koenig, R., Gepts, P., 1989. Segregation and linkage of genes for seed proteins, isozymes, and morphological traits in common bean (Phaseolus vulgaris). J. Hered. 80, 455-459.
67. Koinange, E.M.K., Singh, S.P., Gepts, P., 1996. Genetic control of the domestication syndrome in common-bean. Crop Sci. 36, 1037-1045.
68. Kolkman, J.M., Kelly, J.D., 2003. QTL conferring resistance and avoidance to white mold in common bean. Crop Sci. 43, 539-548.
69. Lamprecht, H., 1961. Weitere Kopplungsstudien an Phaseolus vulgaris mit einer Übersicht über die Koppelungsgruppen. Agric. Hort. Genet. 19, 319-332.
70. Llaca, V., Gepts, P., 1996. Pulsed field gel electrophoresis analysis of the phaseolin locus region in Phaseolus vulgaris. Genome 39, 722-729.
71. McClean, P., Lee, R., Otto, C., Gepts, P., Bassett, M., 2002. Molecular and phenotypic mapping of genes controlling seed coat pattern and color in common bean (Phaseolus vulgaris L.). J. Hered. 93, 148-152.
72. MeMillan Jr., R.T., Davis, M.J., McLaughlin, H.J., 1998. PCR evaluation of fourteen bean golden mosaic virus (BGMV) resistant snap bean lines for presence of the virus. Annu. Rep. Bean Improv. Coop. 41, 31-32.
73. Melotto, M., Kelly, J.D., 1998. SCAR markers linked to major disease resistance genes in common bean. Annu. Rep. Bean Improv. Coop. 41, 64-65.
74. Melotto, M., Kelly, J.D., 2000. An allelic series at the Co-1 locus conditioning resistance to anthracnose in common bean of Andean origin. Euphytica 116, 143-149.
75. Melotto, M., Kelly, J.D., 2001. Fine mapping of the Co-4 locus of common bean reveals a resistance gene candidate, COK-4 that encodes for a protein kinase. Theoret. Appl. Genet. 103, 508-517.
76. Melotto, M., Afanador, L., Kelly, J.D., 1996. Development of a SCAR marker linked to the 1 gene in common bean. Genome 39, 1216-1219.
77. Melotto, M., Balardin, R.S., Kelly, J.D., 2000. Host-pathogen interaction and variability of Colletotrichum lindemuthianum. In: Prusky, D., Freeman, S., Dickman, M.B. (Eds.), Colletotrichum Host Specificity, Pathology, Host-Pathogen Interaction. APS Press, St. Paul, MN, pp. 346-361.
78. Menancio-Hautea, D., Fatokun, C.A., Kumar, L., Danesh, D., Young, N.D., 1993. Comparative genome analysis of mungbean (Vigna radiata L. Wilczek) and cowpea (V. unguiculata L. Walpers) using RFLP mapping data. Theoret. Appl. Genet. 86, 797-810.
79. Mendoza, A., Hernandez, F., Hernandez, S., Ruiz, D., Martinez de la Vega, O., de la Mora, G., Acosta, J., Simpson, J., 2000. Identification of Co-1 anthracnose resistance and linked molecular markers in common bean line A193. Plant Dis. 85, 252-255.
80. Menéndez, C.M., Hall, A.E., Gepts, P., 1997. A genetic linkage map of cowpea (Vigna unguiculata) developed from a cross between two inbred, domesticated lines. Theoret. Appl. Genet. 95, 1210-1217.
81. Michelmore, R.W., Paran, I., Kesseli, R.V., 1991. Identification of markers linked to disease resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions using segregating populations. Proc. Natl. Acad. Sci. USA 88, 9828-9832.
82. 2 gene for anthracnose resistance. Annu. Rep. Bean Improv. Coop. 45, 68-69.
83. Miklas, P.N., Kelly, J.D., 2002b. Registration of two cranberry bean germplasm lines resistant to bean common mosaic and necrosis potyviruses: USCR-7 and USCR-9. Crop Sci. 42, 673-674.
84. Miklas, P.N., Stavely, J.R., Kelly, J.D., 1993. Identification and potential use of a molecular marker for rest resistance in common bean. Theoret. Appl. Genet. 85, 745-749.
85. Miklas, P.N., Johnson, E., Stone, V., Beaver, J.S., Montoya, C., Zapata, M., 1996. Selective mapping of QTL conditioning disease resistance in common bean. Crop Sci. 36, 1344-1351.
86. Miklas, P.N., Beaver, J.S., Steadman, J.R., Silbernagel, M.J., Freytag, G.F., 1997. Registration of three bean common mosaic virus-resistant navy bean germplasms. Crop Sci. 37, 1025.
87. Miklas, P.N., Lambert, S., Mink, G., Silbernagel, M.J., 1998a. Many beans with bc-3 resistance to BCMNV are susceptible to BCMV. Annu. Rep. Bean Improv. Coop. 41, 33-34.
88. Miklas, P.N., Stone, V., Urrea, C.A., Johnson, E., Beaver, J.S., 1998b. Inheritance and QTL analysis of field resistance to ashy stem blight. Crop Sci. 38, 916-921.
89. Miklas, P.N., Delorme, R., Stone, V., Daly, M.J., Stavely, J.R., Steadman, J.R., Bassett, M.J., Beaver, J.S., 2000a. Bacterial, fungal, virus disease loci mapped in a recombinant inbred common bean population ('Dorado/XAN176'), J. Am. Soc. Hort. Sci. 125, 476-481.
90. 2 resistance to bean common mosaic potyvirus in common bean. Euphytica 116, 211-219.
91. Miklas, P.N., Smith, J.R., Riley, R., Grafton, K.F., Singh, S.P., Jung, G., Coyne, D.P., 2000c. Marker-assisted breeding for pyramided resistance to common bacterial blight in common bean. Annu. Rep. Bean Improv. Coop. 43, 39-40.
92. Miklas, P.N., Johnson, W.C., Delorme, R., Gepts, P., 2001a. QTL conditioning physiological resistance and avoidance to white mold in dry bean. Crop Sci. 41, 309-315.
93. Miklas, P.N., Riley, R.H., Grafton, K.F., Gepts, P., 2001b. Quantitative trait loci (QTL) conditioning resistance to white mold in common bean. In: Proceedings of the Workshop on AXI International Sclerotinia, York, UK, July 8-12, pp. 59-60.
94. Miklas, P.N., Hang, A.N., Kelly, J.D., Strausbaugh, C.A., Forster, R.L., 2002a. Registration of three kidney bean germplasm lines resistant to bean common mosaic and necrosis potyviruses: USLK-2 light red kidney, USDK-4 dark red kidney, and USWK-6 white kidney. Crop Sci. 42, 674-675.
95. Miklas, P.N., Pastor-Corrales, M.A., Jung, G., Coyne, D.P., Kelly, J.D., McClean, P.E., Gepts, P., 2002b. Comprehensive linkage map of bean rust resistance genes. Annu. Rep. Bean Improv. Coop. 45, 125-129.
96. Miklas, P.N., Coyne, D.P., Grafton, K.F., Mutlu, N., Reiser, J., Lindgren, D.T., Singh, S.P., 2003. A major QTL for common bacterial blight resistance derives from the common bean great northern landrace cultivar Montana No. 5. Euphytica (in press).
97. Mmbaga, M., Steadman, J.R., Stavely, J.R., 1996. The use of host resistance in disease management of rust in common bean. Integr. Pest Manage. Rev. 1, 191-200.
98. Molina Castenado, A., Beaver, J.S., 1998. Inheritance of normal pod development in bean golden mosaic resistant common beans. Annu. Rep. Bean Improv. Coop. 41, 3-4.
99. Morales, F.J., Castaño, M., 1992. Increased disease severity induced by some comoviruses in bean genotypes possessing monogenic dominant resistance to bean common mosaic potyvirus. Plant Dis. 76, 570-573.
100. Mutlu, N., Coyne, D.P., Steadman, J.R., Reiser, J., Sutton, L., 2002. Progress in backcross breeding with RAPD (SCAR) molecular markers to pyramid QTLs for resistance to common bacterial blight in pinto and great northern beans. Annu. Rep. Bean Improv. Coop. 45, 70-71.
101. Nodari, R.O., 1992. Towards an integrated linkage map of common bean (Phaseolus vulgaris L.). Ph.D. Dissertation. University of California, Davis, CA.
102. Nodari, R.O., Koinange, E.M.K., Kelly, J.D., Gepts, P., 1992. Towards an integrated linkage map of common bean. I. Development of genomic DNA probes and levels of restriction fragment length polymorphism. Theoret. Appl. Genet. 84, 186-192.
103. Nodari, R.O., Tsai, S.M., Gilbertson, R.L., Gepts, P., 1993a. Towards an integrated linkage map of common bean. II. Development of an RFLP-based linkage map. Theoret. Appl. Genet. 85, 513-520.
104. Nodari, R.O., Tsai, S.M., Guzman, P., Gilbertson, R.L., Gepts, P., 1993b. Towards an integrated linkage map of common bean. III. Mapping genetic factors controlling host-bacteria interactions. Genetics 134, 341-350.
105. Ouédraogo, J.T., Gowda, B.S., Jean, M. Close, T.J., Ehlers, J.D., Hall, A.E., Gillespie, A.G., Roberts, P.A., Ismail, A.M., Bruening, G., Gepts, P., Timko, M.P., Belzile, F.J., 2002. An improved genetic linkage map for cowpea (Vigna unguiculata L.) combining AFLP, RFLP, RAPD and biochemical markers. Génome 45, 175-188.
106. Park, S.O., Coyne, D.P., Bokosi, J.M., Steadman, J.R., 1999a. Molecular marker linked to genes for specific rust resistance and indeterminate growth habit in common bean. Euphytica 105, 133-141.
107. Park, S.O., Coyne, D.P., Steadman, J.R., 1999b. Molecular markers linked to the Ur-7 gene conferring specific resistance to rust in common bean. Annu. Rep. Bean Improv. Coop. 42, 31-32.
108. Park, S.O., Coyne, D.P., Mutlu, N., Jung, G., Steadman, J.R., 1999c. Confirmation of molecular markers and flower color associated with QTL for resistance to common bacterial blight in common beans. J. Am. Soc. Hort. Sci. 124, 519-526.
109. Park, S.O., Coyne, D.P., Jung, G., Skroch, P.W., Arnaud-Santana, E., Steadman, J.R., Ariyarathne, H.M., Nienhuis, J., 2000. Mapping of QTL for seed size and shape traits in common bean. J. Am. Soc. Hort. Sci. 125, 466-475.
110. Park, S.O., Coyne, D.P., Steadman, J.R., Skroch, P.W., 2001. Mapping of QTL for resistance to white mold disease in common bean. Crop Sci. 41, 1253-1262.
111. Pastor-Corrales, M.A., Erazo, O.A., Estrada, E.I., Singh, S.P., 1994. Inheritance of anthracnose resistance in common bean accession G 2333. Plant Dis. 78, 959-962.
112. Pastor-Corrales, M.A., Otoya, M.M., Molina, A., Singh, S.P., 1995. Resistance to Colletotrichum lindemuthianum isolates from Middle America and Andean South America in different common bean races. Plant Dis. 79, 63-67.
113. Pastor-Corrales, M.A., Stavely, J.R., Kelly, J.D., Grafton, K.F., Steadman, J.R., Coyne, D.P., Lindgren, D.T., Scully, B.T., 2001. Rust and mosaic resistant bean germplasm releases, 1997-1999. Annu. Rep. Bean Improv. Coop. 44, 101-103.
114. Pedraza, F., Gallego, G., Beebe, S., Tohme, J., 1997. Marcadores SCAR y RAPD para la resistencia a la bacteriosis comun (CBB), pp. 130-134. In: Singh, S.P., Voysest, O. (Eds.), Taller de Mejoramiento de Frijol para el Siglo XXI, Bases para una Estrategia para America Latina. CIAT, Cali, Colombia, 559 pp.
115. Posa-Macalincag, M.C.T., Hosfield, G.L., Grafton, K.F., Uebersax, M.A., Kelly, J.D., 2002. Quantitative trait loci (QTL) analysis of canning quality traits in kidney bean (Phaseolus vulgaris L.). J. Am. Soc. Hort. Sci. 127, 608-615.
116. Schneider, K.A., Brothers, M.E., Kelly, J.D., 1997. Marker assisted selection to improve drought resistance in common bean. Crop Sci. 37, 51-60.
117. Schneider, K.A., Grafton, K.F., Kelly, J.D., 2001. QTL analyses of resistance to Fusarium root rot in bean. Crop Sci. 41, 535-542.
118. Scott, M.E., Michaels, T.E., 1992. Xanthomonas resistance of Phaseolus interspecific cross selections confirmed by field performance. HortScience 27, 250-348.
119. Silbernagel, M.J., Mills, L.J., Wang, W.Y., 1986. Tanzanian strain of bean common mosaic virus. Plant Dis. 70, 839-841.
120. Singh, S.P., 1982. A key for identification of different growth habits of Phaseolus vulgaris L. Annu. Rep. Bean Improv. Coop. 25, 92-95.
121. Singh, S.P., Morales, F.J., Miklas, P.N., Terán, H., 2000. Selection for bean golden mosaic resistance in intra- and inter-racial bean populations. Crop Sci. 40, 1565-1572.
122. Stavely, J.R., 1984. Genetics of resistance to Uromyces phaseoli in a Phaseolus vulgaris line resistant to most races of the pathogen. Phytopathology 74, 339-344.
123. Stavely, J.R., 1990. Genetics of rust resistance in Phaseolus vulgaris plant introduction PI181996. Phytopathology 80, 1056 (Abstract).
124. Stavely, J.R., 1998. Recombination of two major dominant rust resistance genes that are tightly linked in repulsion. Annu. Rep. Bean Improv. Coop. 41, 17-18.
125. Stavely, J.R., 2000. Pyramiding rast and viral resistance genes using traditional and marker techniques in common bean. Annu. Rep. Bean Improv. Coop. 43, 1-4.
126. Stavely, J.R., Kelly, J.D., 1996. Evidence for the independence of the Ur-4 (Up-2) and Ur-6 rust resistance genes. Annu. Rep. Bean Improv. Coop. 39, 302-302.
127. Stavely, J.R., McMillan Jr., R.T., 1992. BARC-rust resistant-bush, fresh-market green bean germplasm lines. HortScience 27, 1052-1454.
128. Stavely, J.R., Steinke, J., 1990. BARC-rust resistant bush wax bean germplasm lines. HortScience 25, 1451-1452.
129. Stavely, J.R., Steinke, J., McMillan Jr., R.T., Grafton, K.F., Steadman, J.R., Kelly, J.D., Coyne, D.P., Lindgren, D.T., Silbernagel, M.J., 1992. Rust resistant bean germplasm releases. Annu. Rep. Bean Improv. Coop. 35, 228-229.
130. Stavely, J.R., Kelly, J.D., Grafton, K.F., 1994. BelMiDak-rust-resistant navy dry beans germplasm lines. HortScience 29, 709-710.
131. Stavely, J.R., Kelly, J.D., Grafton, K.F., Mullins, C.A., Straw, A., McMillan Jr., R.T., Beaver, J.S., Miklas, P.N., Steinke, J., Steadman, J.R, Coyne, D.P., Lindgren, D.T., Silbernagel, M.J., 1997. Rust resistant bean germplasm releases, 1994-1996. Annu. Rep. Bean Improv. Coop. 40, 120-121.
132. Strausbaugh, C.A., Myers, J.R., Forster, R.L., McClean, P.E., 1999. bc-1 and bc-u - two loci controlling bean common mosaic virus resistance in common bean are linked. J. Am. Soc. Hort. Sci. 124, 644-648.
133. Tamulonis, J.P., Lussi, B.M., Hussey, R.S., Parrott, W.A., Boerma, R., 1997. DNA markers associated with resistance to Japanese root-knot nematode in soybean. Crop Sci. 37, 783-788.
134. Tar'an, B., Michaels, T.E., Pauls, K.P., 2001. Mapping genetic factors affecting the reaction to Xanthomonas axonopodis pv. phaseoli in Phaseolus vulgaris under field conditions. Genome 44, 1046-1056.
135. Temple, S.R., Morales, F.J., 1986. Linkage of dominant hypersensitive resistance to bean common mosaic virus to seed color in Phaseolus vulgaris. Euphytica 35, 331-333.
136. Ubi, B.E., Mignouna, H., Thottappilly, G., 2000. Constraction of a genetic linkage map and QTL analysis using a recombinant inbred population derived from an intersubspecific cross of cowpea (Vigna unguiculata (L.) Walp.). Breed. Sci. 50, 161-172.
137. Urrea, C.A., Miklas, P.N., Beaver, J.S., Riley, R.H., 1996. A codominant RAPD marker useful for indirect selection of BGMV resistance in common bean. J. Am. Soc. Hort. Sci. 121, 1035-1039.
138. Vallejo, V., Kelly, J.D., 2001. Development of a SCAR marker linked to the Co-5 locus in common bean. Annu. Rep. Bean Improv. Coop. 44, 121-122.
139. 2 gene conditioning resistance to bean anthracnose. In: Proceedings of the X Conference on Plant and Animal Genome, 2002. http://www.intl-pag.org/pag/10/abstracts/PAGX_P233.html.
140. Vallejos, E.C., Sakiyama, N.S., Chase, C.D., 1992. A molecular marker-based linkage map of Phaseolus vulgaris L. Genetics 131, 733-740.
141. Vallejos, C., Skroch, P., Nienhuis, J., 2001. Phaseolus vulgaris - The common bean. Integration of RFLP- and RAPD-based linkage maps. In: Phillips, R., Vasil, I. (Eds.), DNA-based Markers in Plants. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 301-317.
142. Vanhouten, W., Mackenzie, S., 1999. Construction and characterization of a common bean bacterial artificial chromosome library. Plant Mol. Biol. 40, 977-983.
143. Velez, J.J., Bassett, M.J., Beaver, J.S., Molina, A., 1998. Inheritance of resistance to bean golden mosaic virus in common bean. J. Am. Soc. Hort. Sci. 123, 628-631.
144. Wallace, D.H., Yourstone, K.S., Masaya, P.N., Zobel, R.W., 1993. Photoperiod gene control over partitioning between reproductive and vegetative growth. Theoret. Appl. Genet. 86, 6-16.
145. Weeden, N.F., 1984. Linkage between the gene coding the small subunit of ribulose biphosphate carboxylase and the gene coding malic enzyme in Phaseolus vulgaris. Annu. Rep. Bean Improv. Coop. 27, 123-124.
146. Weeden, N.F., Liang, C.Y., 1985. Detection of a linkage between white flower color and Est-2 in common bean. Annu. Rep. Bean Improv. Coop. 28, 87-88.
147. Weeden, N.F., Timmerman, G.M., Hemmat, M., Kneen, B.E., Lodhi, M.A., 1992. Inheritance and reliability of RAPD markers. In: Proceedings of the CSSA-ASHS-AGA Joint Plant Breeding Symposium Series, Minneapolis. Crop Science Society of America, Madison, WI, pp. 12-17.
148. Welsh, W., Bushuk, W., Roca, W., Singh, S.P., 1995. Characterization of agronomic traits and markers of recombinant inbred lines from intra- and inter-racial populations of Phaseolus vulgaris L. Theoret. Appl. Genet. 91, 169-177.
149. Witsenboer, H., Kesseli, R.V., Fortin, M.G., Stanghellini, M., Michelmore, R.W., 1995. Sources and genetic structure of a cluster of genes for resistance to three pathogens in lettuce. Theoret. Appl. Genet. 91, 178-188.
150. Young, R.A., Kelly, J.D., 1996a. RAPD markers flanking the Are gene for anthracnose resistance in common bean. J. Am. Soc. Hort. Sci. 121, 37-41.
151. Young, R.A., Kelly, J.D., 1996b. Characterization of the genetic resistance to Colletotrichum lindemuthianum in common bean differential cultivars. Plant Dis. 80, 650-654.
152. Young, R.A., Kelly, J.D., 1997. RAPD markers linked to three major anthracnose resistance genes in common bean. Crop Sci. 37, 940-946.
153. Young, R.A., Melotto, M., Nodari, R.O., Kelly, J.D., 1998. Marker assisted dissection of the oligogenic anthracnose resistance in common bean cultivar G 2333. Theoret. Appl. Genet. 96, 87-94.
154. Yu, Z.H., Stall, R.E., Vallejos, C.E., 1998. Detection of genes for resistance to common bacterial blight of beans. Crop Sci. 38, 1290-1296.
155. Yu, K.F., Park, S.J., Poysa, V., 1999. Abundance and variation of microsatellite DNA sequences in beans (Phaseolus and Vigna). Genome 42, 27-34.
156. Yu, K., Park, S.J., Poysa, V., 2000a. Marker-assisted selection of common beans for resistance to common bacterial blight: efficacy and economics. Plant Breed. 119, 411-415.
157. Yu, K., Park, S., Poysa, V., Gepts, P., 2000b. Integration of simple sequence repeat (SSR) markers into a molecular linkage map of common bean (Phaseolus vulgaris L.). J. Hered. 91, 429-434.