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Volumn 18, Issue 3, 1999, Pages 709-716

A mutation in region 1.1 of σ70 affects promoter DNA binding by Escherichia coli RNA polymerase holoenzyme

Author keywords

Initiation; RNA polymerase; Sigma; Transcription

Indexed keywords

ALANINE; BACTERIAL DNA; ISOLEUCINE; PROTEIN SUBUNIT; RNA POLYMERASE; SIGMA FACTOR;

EID: 0011981018     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/18.3.709     Document Type: Article
Times cited : (30)

References (39)
  • 1
    • 0032502311 scopus 로고    scopus 로고
    • 70 subunit from Escherichia coli RNA polymerase are modulated by an interaction with core enzyme
    • 70 subunit from Escherichia coli RNA polymerase are modulated by an interaction with core enzyme. Biochemistry, 37, 3312-3320.
    • (1998) Biochemistry , vol.37 , pp. 3312-3320
    • Callaci, S.1    Heyduk, T.2
  • 2
    • 0025175708 scopus 로고
    • Two amino acids in an RNA polymerase σ factor involved in recognition of adjacent base pairs in the -10 region of a cognate promoter
    • Daniels, D., Zuber, R. and Losick, R. (1990) Two amino acids in an RNA polymerase σ factor involved in recognition of adjacent base pairs in the -10 region of a cognate promoter. Proc. Natl Acad. Sci. USA, 87, 8075-8079.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 8075-8079
    • Daniels, D.1    Zuber, R.2    Losick, R.3
  • 3
    • 0024342908 scopus 로고
    • Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography
    • Darst, S.A., Kubalek, E.W. and Kornberg, R.D. (1989) Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography. Nature, 340, 730-732.
    • (1989) Nature , vol.340 , pp. 730-732
    • Darst, S.A.1    Kubalek, E.W.2    Kornberg, R.D.3
  • 4
    • 0031779081 scopus 로고    scopus 로고
    • RNA polymerase-promoter interactions: The comings and goings of RNA polymerase
    • deHaseth, P.L., Zupanic, M.L. and Record, M.T.,Jr (1998) RNA polymerase-promoter interactions: the comings and goings of RNA polymerase. J. Bacteriol., 180, 3019-3025.
    • (1998) J. Bacteriol. , vol.180 , pp. 3019-3025
    • DeHaseth, P.L.1    Zupanic, M.L.2    Record M.T., Jr.3
  • 6
    • 0027132539 scopus 로고
    • Amino-terminal amino acids modulate σ-factor DNA-binding activity
    • Dombroski, A.J., Walter, W.A. and Gross, C.A. (1993) Amino-terminal amino acids modulate σ-factor DNA-binding activity. Genes Dev., 7, 2446-2455.
    • (1993) Genes Dev. , vol.7 , pp. 2446-2455
    • Dombroski, A.J.1    Walter, W.A.2    Gross, C.A.3
  • 7
    • 0024355282 scopus 로고
    • 70 subunit of RNA polymerase with altered promoter specificity
    • 70 subunit of RNA polymerase with altered promoter specificity. J. Mol. Biol., 206, 579-590.
    • (1989) J. Mol. Biol. , vol.206 , pp. 579-590
    • Gardella, T.1    Moyle, H.2    Susskind, M.M.3
  • 8
    • 0023057529 scopus 로고
    • Sigma factors from E.coli, B.Subtilis, phage SPO1 and phage T4 are homologous proteins
    • Gribskov, M. and Burgess, R.R. (1986) Sigma factors from E.coli, B.subtilis, phage SPO1 and phage T4 are homologous proteins. Nucleic Acids Res., 14, 6745-6763.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 6745-6763
    • Gribskov, M.1    Burgess, R.R.2
  • 9
    • 0000776061 scopus 로고
    • Sigma factors
    • McKnight, S.L. and Yamamoto, K.R. (eds). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Gross, C.A., Lonetto, M. and Losick, R. (1992) Sigma factors. In McKnight, S.L. and Yamamoto, K.R. (eds). Transcriptional Regulation. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, Vol. 1, pp. 129-176.
    • (1992) Transcriptional Regulation , vol.1 , pp. 129-176
    • Gross, C.A.1    Lonetto, M.2    Losick, R.3
  • 10
    • 0019123314 scopus 로고
    • In vitro comparison of initiation properties of bacteriophage λ wild-type PR and x3 mutant promoters
    • Hawley, D.K. and McClure, W.R. (1980) In vitro comparison of initiation properties of bacteriophage λ wild-type PR and x3 mutant promoters. Proc. Natl Acad. Sci. USA, 77, 6381-6385.
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 6381-6385
    • Hawley, D.K.1    McClure, W.R.2
  • 11
    • 0023918675 scopus 로고
    • Structure and function of bacterial sigma factors
    • Helmann, J.D. and Chamberlin, M.J. (1988) Structure and function of bacterial sigma factors. Annu. Rev. Biochem., 57, 839-872.
    • (1988) Annu. Rev. Biochem. , vol.57 , pp. 839-872
    • Helmann, J.D.1    Chamberlin, M.J.2
  • 12
    • 0015527445 scopus 로고
    • Studies of the binding of escherichia coli RNA polymerase to DNA. I. The role of the sigma subunit in site selection
    • Hinkle, D.C. and Chamberlin, M.J. (1972a) Studies of the binding of Escherichia coli RNA polymerase to DNA. I. The role of the sigma subunit in site selection. J. Mol. Biol., 70, 157-185.
    • (1972) J. Mol. Biol. , vol.70 , pp. 157-185
    • Hinkle, D.C.1    Chamberlin, M.J.2
  • 13
    • 0015527446 scopus 로고
    • Studies of the binding of Escherichia coli RNA polymerase to DNA. II. Kinetics of the binding reaction
    • Hinkle, D.C. and Chamberlin, M.J. (1972b) Studies of the binding of Escherichia coli RNA polymerase to DNA. II. Kinetics of the binding reaction. J. Mol. Biol., 70, 187-195.
    • (1972) J. Mol. Biol. , vol.70 , pp. 187-195
    • Hinkle, D.C.1    Chamberlin, M.J.2
  • 14
    • 0030746151 scopus 로고    scopus 로고
    • σ factor mutations affecting the sequence-selective interaction of RNA polymerase with -10 region single-stranded DNA
    • Huang, X., Lopez de Saro, F.J. and Helmann, J.D. (1997) σ factor mutations affecting the sequence-selective interaction of RNA polymerase with -10 region single-stranded DNA. Nucleic Acids Res., 25, 2603-2609.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 2603-2609
    • Huang, X.1    Lopez De Saro, F.J.2    Helmann, J.D.3
  • 15
    • 0028333908 scopus 로고
    • A promoter melting region in the primary σ factor of Bacillus subtilis
    • Juang, Y. and Helmann, J.D. (1994) A promoter melting region in the primary σ factor of Bacillus subtilis. J. Mol. Biol., 235, 1470-1488.
    • (1994) J. Mol. Biol. , vol.235 , pp. 1470-1488
    • Juang, Y.1    Helmann, J.D.2
  • 16
    • 0026599029 scopus 로고
    • Mutant σ factor blocks transition between promoter binding and initiation of transcription
    • Jones, C.H. and Moran, C.P.,Jr (1992) Mutant σ factor blocks transition between promoter binding and initiation of transcription. Proc. Natl Acad. Sci. USA, 89, 1958-1962.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 1958-1962
    • Jones, C.H.1    Moran C.P., Jr.2
  • 17
    • 0023613953 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel, T.A., Roberts, J.D. and Zakour, R.A. (1987) Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol., 154, 367-382.
    • (1987) Methods Enzymol. , vol.154 , pp. 367-382
    • Kunkel, T.A.1    Roberts, J.D.2    Zakour, R.A.3
  • 18
    • 0024974082 scopus 로고
    • 70: Localization of a region involved in the interaction with core RNA polymerase
    • 70: localization of a region involved in the interaction with core RNA polymerase. Biochemistry, 28, 7728-7734.
    • (1989) Biochemistry , vol.28 , pp. 7728-7734
    • Lesley, S.A.1    Burgess, R.R.2
  • 19
    • 0026612797 scopus 로고
    • 70 family: Sequence conservation and evolutionary relationships
    • 70 family: sequence conservation and evolutionary relationships. J. Bacteriol., 174, 3843-3849.
    • (1992) J. Bacteriol. , vol.174 , pp. 3843-3849
    • Lonetto, M.1    Gribskov, M.2    Gross, C.3
  • 20
    • 0019442506 scopus 로고
    • Cascades of sigma factors
    • Losick, R. and Pero, J. (1981) Cascades of sigma factors. Cell, 25, 582-584.
    • (1981) Cell , vol.25 , pp. 582-584
    • Losick, R.1    Pero, J.2
  • 21
    • 0018780589 scopus 로고
    • Purification and properties of the sigma subunit of Escherichia coli DNA-dependent RNA polymerase
    • Lowe, R. Hager, D.A. and Burgess, R.R. (1979) Purification and properties of the sigma subunit of Escherichia coli DNA-dependent RNA polymerase. Biochemistry, 18, 1344-1352.
    • (1979) Biochemistry , vol.18 , pp. 1344-1352
    • Lowe, R.1    Hager, D.A.2    Burgess, R.R.3
  • 22
    • 0030915128 scopus 로고    scopus 로고
    • Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide
    • Marr, M.T. and Roberts, J.W. (1997) Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide. Science, 276, 1258-1260.
    • (1997) Science , vol.276 , pp. 1258-1260
    • Marr, M.T.1    Roberts, J.W.2
  • 24
    • 0028875725 scopus 로고
    • Three-dimensional structure of E.coli core RNA polymerase: Promoter binding and elongation conformations of the enzyme
    • Polyakov, A., Severinova, E. and Darst, S.A. (1995) Three-dimensional structure of E.coli core RNA polymerase: promoter binding and elongation conformations of the enzyme. Cell, 83, 365-373.
    • (1995) Cell , vol.83 , pp. 365-373
    • Polyakov, A.1    Severinova, E.2    Darst, S.A.3
  • 27
    • 0030576519 scopus 로고    scopus 로고
    • Base-specific recognition of the nontemplate strand of promoter DNA by E.coli RNA polymerase
    • Roberts, C.W. and Roberts, J.W. (1996) Base-specific recognition of the nontemplate strand of promoter DNA by E.coli RNA polymerase. Cell, 86, 495-501.
    • (1996) Cell , vol.86 , pp. 495-501
    • Roberts, C.W.1    Roberts, J.W.2
  • 29
    • 0028106101 scopus 로고
    • A mutants defective in promoter melting
    • A mutants defective in promoter melting. J. Bacteriol., 176, 5218-5224.
    • (1994) J. Bacteriol. , vol.176 , pp. 5218-5224
    • Rong, J.C.1    Helmann, J.D.2
  • 30
    • 0015503165 scopus 로고
    • Angular alteration of the DNA helix by E.coli RNA polymerase
    • Saucier, J. and Wang, J. (1972) Angular alteration of the DNA helix by E.coli RNA polymerase. Nature New Biol., 239, 167-170.
    • (1972) Nature New Biol. , vol.239 , pp. 167-170
    • Saucier, J.1    Wang, J.2
  • 33
    • 0022253253 scopus 로고
    • Two functional domains conserved in major and alternate bacterial sigma factors
    • Stragier, P., Parsot, C. and Bouvier, J. (1985) Two functional domains conserved in major and alternate bacterial sigma factors. FEBS Lett., 187, 11-15.
    • (1985) FEBS Lett. , vol.187 , pp. 11-15
    • Stragier, P.1    Parsot, C.2    Bouvier, J.3
  • 34
    • 0019330818 scopus 로고
    • Binding of Escherichia coli ribonucleic acid polymerase holoenzyme to a bacteriophage t7 promoter-containing fragment: Evaluation of promoter binding constants as a function of solution conditions
    • Strauss, H.S., Burgess, R.R. and Record, M.T.,Jr (1980) Binding of Escherichia coli ribonucleic acid polymerase holoenzyme to a bacteriophage T7 promoter-containing fragment: evaluation of promoter binding constants as a function of solution conditions. Biochemistry, 19, 3504-3515.
    • (1980) Biochemistry , vol.19 , pp. 3504-3515
    • Strauss, H.S.1    Burgess, R.R.2    Record M.T., Jr.3
  • 35
    • 0014669901 scopus 로고
    • Cyclic re-use of the RNA polymerase sigma factor
    • Travers, A.A. and Burgess, R.R. (1969) Cyclic re-use of the RNA polymerase sigma factor. Nature, 222, 537-540.
    • (1969) Nature , vol.222 , pp. 537-540
    • Travers, A.A.1    Burgess, R.R.2
  • 37
    • 0031581917 scopus 로고    scopus 로고
    • 70 is required for efficient isomerization and intiation of transcription by Escherichia coli RNA polymerase
    • 70 is required for efficient isomerization and intiation of transcription by Escherichia coli RNA polymerase. J. Mol. Biol., 267, 60-74.
    • (1997) J. Mol. Biol. , vol.267 , pp. 60-74
    • Wilson, C.1    Dombroski, A.J.2
  • 38
    • 0017163866 scopus 로고
    • Conformational transition of Escherichia coli RNA polymerase induced by the interaction of σ subunit with core enzyme
    • Wu, Y.-H., Yarbrough, L.R. and Wu, C.-W. (1976) Conformational transition of Escherichia coli RNA polymerase induced by the interaction of σ subunit with core enzyme. Biochemistry, 15, 3254-3258.
    • (1976) Biochemistry , vol.15 , pp. 3254-3258
    • Wu, Y.-H.1    Yarbrough, L.R.2    Wu, C.-W.3


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