Morphological variation in a collapsed single homopolymer chain

Journal of Chemical Physics

Volumn 109, Issue 12, 1998, Pages 5070-5077

  Noguchi, H ^a,b   Yoshikawa, K ^a  

^a KYOTO UNIVERSITY   (Japan)

^b NAGOYA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0009162851     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.477121     Document Type: Article

References (52)

1. P. J. Flory, Statistical Mechanics of Chain Molecules (Interscience, New York, 1969).
2. P. G. de Gennes, Scaling Concepts in Polymer Physics (Cornell University Press, Ithaca, 1979).
3. A. Yu. Grosberg and A. R. Khokhlov, Statistical Physics of Macromolecules (American Institute of Physics, New York, 1994).
4. A. Baumgärtner, in Applications of the Monte Carlo Method in Statistical Physics, 2nd ed., edited by K. Binder (Springer, New York, 1987), pp. 145-160.
5. A. Baumgärtner, J. Chem. Phys. 72, 871 (1980).
6. M. Wittkop, S. Kreitmeier, and D. Göritz, J. Chem. Phys. 104, 3373 (1996).
7. Yu. A. Kuznetsov, E. G. Timoshenko, and K. A. Dawson, J. Chem. Phys. 103, 4807 (1995).
8. Y. Zhou, C. K. Hall, and M. Karplus, Phys. Rev. Lett. 77, 2822 (1996).
9. Y. Zhou, M. Karplus, J. M. Wichert, and C. K. Hall, J. Chem. Phys. 107, 10691 (1997).
10. E. P. Geiduschek and I. Gray, J. Am. Chem. Soc. 78, 879 (1956).
11. S. T. Sun, I. Nishio, G. Swislow, and T. Tanaka, J. Chem. Phys. 73, 5971 (1980).
12. C. Wu and S. Zhou, Phys. Rev. Lett. 77, 3053 (1996).
13. I. M. Lifshitz, A. Yu. Grosberg, and A. R. Khokhlov, Rev. Mod. Phys. 50, 683 (1978).
14. C. B. Post and B. H. Zimm, Biopolymers 21, 2123 (1982).
15. V. A. Bloomfield, Curr. Opin. Struct. Biol. 6, 334 (1996).
16. K. Yoshikawa, M. Takahashi, V. V. Vasilevskaya, and A. R. Khokhlov, Phys. Rev. Lett. 76, 3029 (1996).
17. M. Takahashi, K. Yoshikawa, V. V. Vasilevskaya, and A. R. Khokhlov, J. Phys. Chem. B 101, 9396 (1997).
18. Y. Yamasaki and K. Yoshikawa, J. Am. Chem. Soc. 119, 10573 (1997).
19. K. Yoshikawa, Y. Matsuzawa, K. Minagawa, M. Doi, and M. Matsumoto, Biochem. Biophys. Res. Commun. 188, 1274 (1992).
20. P. J. Hagerman, Annu. Rev. Biophys. Biophys. Chem. 17, 265 (1988).
21. G. E. Plum, P. G. Arscott, and V. A. Bloomfield, Biopolymers 30, 631 (1990).
22. H. Noguchi, S. Saito, S. Kidoaki, and K. Yoshikawa, Chem. Phys. Lett. 261, 527 (1996).
23. H. Noguchi and K. Yoshikawa, Chem. Phys. Lett. 278, 184 (1997).
24. Yu. A. Kuznetsov, E. G. Timoshenko, and K. A. Dawson, J. Chem. Phys. 105, 7116 (1996).
25. A. Kolinski, J. Skolnick, and R. Yaris, J. Chem. Phys. 85, 3585 (1986).
26. J. P. K. Doye, R. P. Sear, and D. Frenkel, J. Chem. Phys. 108, 2134 (1998).
27. U. Bastolla and P. Grassberger, J. Stat. Phys. 89, 1061 (1997).
28. N. Karasawa and W. A. Goddard, III, J. Phys. Chem. 92, 5828 (1988).
29. T. A. Kavassalis and P. R. Sundararajan, Macromolecules 26, 4144 (1993).
30. P. R. Sundararajan and T. A. Kavassalis, J. Chem. Soc. Faraday Trans. 91, 2541 (1995).
31. S. Fujiwara and T. Sato, J. Chem. Phys. 107, 613 (1997).
32. S. Doniach, T. Garel, and H. Orland, J. Chem. Phys. 105, 1601 (1996).
33. B. A. Berg and T. Neuhaus, Phys. Lett. B 267, 249 (1991);
34. Phys. Rev. Lett. 68, 9 (1992).
35. U. H. E. Hansmann and Y. Okamoto, Physica A 212, 415 (1994).
36. B. Hesselbo and R. B. Stinchcombe, Phys. Rev. Lett. 74, 2151 (1995).
37. A. P. Lyubartsev, A. A. Martsinovski, S. V. Shevkunov, and P. N. Vorontsov-Velyaminov, J. Chem. Phys. 96, 1776 (1992).
38. E. Marinari and G. Parisi, Europhys. Lett. 19, 451 (1992).
39. U. H. E. Hansmann and Y. Okamoto, Phys. Rev. E 56, 2228 (1997).
40. N. Urakami and M. Takasu, J. Phys. Soc. Jpn. 65, 2694 (1996).
41. A. M. Ferrenberg and R. H. Swendsen, Phys. Rev. Lett. 61, 2635 (1988).
42. L. D. Landau and E. M. Lifshitz, Statistical Physics (Pergamon, London, 1958).
43. J. Rudnick and G. Gaspari, J. Phys. A 19, L191 (1986).
44. G. Zifferer and O. F. Olaj, J. Chem. Phys. 100, 636 (1994).
45. R. S. Berry, T. L. Beck, H. L. Davis, and J. Jellinek, Adv. Chem. Phys. 70 (2), 75 (1988).
46. J. B. Kaelberer and R. D. Etters, J. Chem. Phys. 66, 3233 (1977).
47. L. Cartz, Proc. Phys. Soc. London, Sect. B 68, 957 (1955).
48. N. V. Hud, K. H. Downing, and R. Balhorn, Proc. Natl. Acad. Sci. 92, 3581 (1995).
49. J. Ubbink and T. Odijk, Europhys. Lett. 33, 353 (1996).
50. V. V. Vasilevskaya, A. R. Khokhlov, S. Kidoaki, and K. Yoshikawa, Biopolymers 41, 51 (1997).
51. A. D. Bates, and A. Maxwell, DNA Topology (Oxford University Press, Oxford, 1993).
52. D. J. Wales and J. P. K. Doye, J. Chem. Phys. 103, 3061 (1995).