Free energy calculation for DNA bases in various solvents using Flory-Huggins theory

Chemical Physics Letters

Volumn 335, Issue 5-6, 2001, Pages 489-495

  Amutha, R ^a   Subramanian, V ^a   Unni Nair, Balachandran ^a  

^a CENTRAL LEATHER RESEARCH INSTITUTE   (India)

Author keywords

DNA bases; Flory Huggins theory; Solvation free energy

Indexed keywords

EID: 0004576834     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0009-2614(01)00050-1     Document Type: Article

References (33)

1. Beveridge D.L., Di Capua F.M. Annu. Rev. Biophys. Biophys. Chem. 18:1989;431.
2. Kollman P.A. Chem. Rev. 93:1993;2395.
3. Tomasi J., Persico M. Chem. Rev. 94:1994;2027.
4. Cramer C.J., Truhlar D.G. Chem. Rev. 99:1999;2161.
5. Flory P.J. Principles of Polymer Chemistry. 1953;Cornell University Press, Ithaca, New York.
6. Fan C.F., Olafson B.D., Blanco M., Hsu S.L. Macromolecules. 25:1992;3667.
7. Kyoguku Y., Lord R.C., Rich A. J. Am. Chem. Soc. 89:1967;496.
8. Kyoguku Y., Lord R.C., Rich A. Biophys. Biochem. Acta. 179:1969;10.
9. Newmark R.A., Cantor C.R. J. Am. Chem. Soc. 90:1968;5010.
10. Jorgensen W., Pranata J. J. Am. Chem. Soc. 112:1990;2008.
11. Schneider H.J. Chem. Soc. Rev. 22:1994;227.
12. Orozco M., Luque F.J. Biopolymers. 33:1993;1851.
13. Franklin R.E., Gosling R.G. Acta Cryst. 6:1953;673.
14. Schneider B., Cohen D., Berman H.M. Biopolymer. 32:1992;725.
15. Cantor C.R., Schimmel P.R. Biophysical Chemistry, Part-I. The conformation of Biophysical Macromolecules. 1980;Freeman, San Francisco.
16. Wacker W. Angew. Chem. Int. 4:1965;150.
17. Saenger W. Principles of Nucleic Acid Structure. 1984;Springer, New York.
18. Scordamaglia R., Cavallore F., Clementi E. J. Am. Chem. Soc. 99:1977;5545.
19. Corongiu G., Clementi E. Biopolymers. 20:1981;551.
20. Clementi E., Corongiu G. J. Chem. Phys. 72:1980;3979.
21. Perahia D., John M.S., Pullman B. Biochim. Biophys. Acta. 474:1977;349.
22. Sponer J., Leszczynski J., Hobza P. J. Phys. Chem. 100:1996;1965.
23. Subramanian V., Sivanesan D., Ramasami T. Chem. Phys. Lett. 290:1998;189.
24. Brameld K., Dasgupta S., Goddard W.A. J. Phys. Chem. B. 101:1997;4851.
25. Spǒner J., Hobza P. Chem. Phys. Lett. 267:1997;263.
26. Onsager L. J. Am. Chem. Soc. 58:1938;1486.
27. Cieplak P., Kollman P.A. J. Am. Chem. Soc. 110:1988;3734.
28. Giesen D.J., Chambers C.C., Cramer C.J., Truhlar D.G. J. Phys. Chem. B. 101:1997;5084.
29. Miller J.L., Kollman P.A. J. Phys. Chem. 100:1996;8587.
30. Florian J., Spǒner J., Warshel A. J. Phys. Chem. B. 103:1999;884.
31. Cramer C.J., Truhlar D.G. Chem. Phys. Lett. 198:1992;74.
32. Orozco M., Luque F.J. Biopolymers. 33:1993;1851.
33. Mohan V., Davis M.E., McCammon J.A., Pettitt B.M. J. Phys. Chem. 96:1992;6428.