Genetic molecular linkage map construction and genome analysis of rice doubled haploid population

Acta Botanica Sinica

Volumn 40, Issue 12, 1998, Pages 1115-1122

  Shen, Li Shuang ^a   He, Ping ^a   Xu, Yun Bi ^b,c   Tan, Zhen Bo ^a   Lu, Chao Fu ^a   Zhu, Li Huang ^a  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^b ZHEJIANG UNIVERSITY   (China)

^c Department of Obstetrics Gynecology   (United States)

Author keywords

Genetic map; Molecular markers; Oryza sativa; Recombination frequency; Skewed segregation

Indexed keywords

EID: 0001483007     PISSN: 05777496     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (28)

1. McCouch S R, Kochert G, Yu Z H, Khush G S, Coffman W R, Tanksley S R. Molecular mapping of rice chromosomes. Theor Appl Genet, 1988, 76:815-829
2. Causse M A, Fulton T M, Cho Y G, Ahn S N, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald P C, Harrington S E, Second G, McCouch S R, Tanksley S D. Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics, 1994, 138:1251-1274
3. Kurata N, Nagamura Y, Yamamoto K, Sue N, Wu J, Antonio B, Shomura A, Shimizu T, Lin S, Inoue T, Fukuda A, Shimano T, Kuboki Y, Toyama T, Miyamoto Y, Kirihara T, Hayasaks K, Miyao A, Monna L, Zhong H S, Tamura Y, Wang Z Y, Momma T, Umehara Y, Yano M, Sasaki T, Minobe Y. A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nat Genet, 1994, 8:365-372
4. Xu Ji-Chen, Zhu Li-Huang, Chen Ying, Lu Chao-Fu, Cai Hong-Wei. Construction of a rice molecular linkage map using a double haploid (DH) population. Acta Genet Sin, 1994, 21:205-214 (in Chinese)
5. Lu C F, Shen L S, Tan Z B, Xu Y B, He P, Chen Y, Zhu L H. Comparative QTL mapping of agronomic quantitative traits across environments. Theor Appl Genet, 1996, 93:1211-1217
6. Tan Zhen-Bo, Shen Li-Shuang, Kuang Hao-Chi, Lu Chao-Fu, Chen Ying, Zhou Kai-Da, Zhu Li-Huang. Identification of QTLs for lengthes of the top intemodes and other traits in rice and analysis of their genetic effects. Acta Genet Sin, 1996, 23:439-446 (in Chinese)
7. 2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol Gen Genet, 1997, 253:535 -545
8. Vos P, Hoger R, Bleeker M, Reijani M, Lee T V D, Hornes M, Friiters A, Pot J, Peleman J, Kaiper M, Zabeau M. AFLP: a new technique for DNA finger printing. Nucl Acids Res, 1995, 23:4407-4414
9. Chen Hong, Zhu Li-Huang, Xu Ji-Chen, Chen Mei-Ling. Construction of rice RAPD molecular linkage map. Acta Bot Sin, 1995, 37:677-684 (in Chinese)
10. Chen X, Temnykh S, Xu Y, Cho G Y, McCouch S R. Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theor Appl Genet, 1997, 95:553-567
11. Shen L H, Zhu L H. Direct PCR-based genetic mapping of rice telomeric repeat associated sequences. Genome, 1998, 41:193-198
12. Lander E S, Green P, Abrahamson J, Barlow A, Daly M J, Lincoln S E, Eton T. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1987, 1:174-181
13. Young N D, Tanksley S D. Restriction fragment length polymorphism maps and the concept of graphical genotypes. Theor Appl Genet, 1989, 77:95-101
14. Singh S, Ishii T, Parco A, Huang N, Brar D S, Khush G S. Centromere mapping and oriention of the molecular linkage map of rice (Oryza sativa L.). Proc Natl Acad Sci USA, 1996, 93:6163-6168
15. Cheng Zhu-Kuan, Yu Heng-Xiu, Yan Chang-Jie, Zhu Li-Huang, Gu Ming-Hong. An isotetrasomic of short arm of chromosome 10 in rice and its application to centromere mapping. Acta Genet Sin, 1997, 24:23-29 (in Chinese)
16. Fukui K, Iijima K. Somatic chromosomes map of rice by imagining methods. Theor Appl Genet, 1991, 81:589-596
17. Liu Yong-Sheng, Zhu Li-Huang, Sun Jing-San, He Ping, Wang Yu-Zhong, Shen Li-Shuang. Mapping quantitative trait loci for reproductive barriers occurring in hybrid between indica and japonica rice. Acta Bot Sin, 1997, 39:1099-1104 (in Chinese)
18. Akkya M S, Shoemaker R C, Specht J E, Bhagwat A A, Cregan P B. Integration of simple sequence repeat DNA markers into a soybean linkage map. Crop Sci, 1995, 35:1439-1445
19. Panaud O, Chen X, McCouch S R. Development of microsatellite markers and characterization of simple sequence length polymorphisms (SSLPs) in rice (Oryza sativa L.). Mol Gen Genet, 1996, 252:597-607
20. Wu K S, Tanksley S D. Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet, 1993, 241:225 -235
21. Huang N, McCouch S R, Mew T, Parco A, Guiderdoni E. Development of a RFLP map from doubled haploid population in rice. Rice Genet Newl, 1994, 11:134-137
22. Devaux P, Kilian A, Kleinhofs A. Comparative mapping of the barley genome with male and female recombination-derived, doubled haploid population. Mol Gen Genet, 1995, 249:600-608
23. Kearsy M J, Ramsay L D, Jennings D E, Lydiate D J, Bohuon E J R, Marshall D F. Higher recombination frequencies in female compared to male meiosis in Brassica oleracea. Theor Appl Genet, 1996, 92:363-367
24. 2 population of rice (Oryza sativa L.) . Acta Bot Sin, 1995, 37:91-96 (in Chinese)
25. Harushima Y, Kurata N, Yano M, Nagamura Y, Sasaki T, Minobe Y, Nakagahra M. Detection of segregation distortions in an indica-japonica rice cross using a high-resolution molecular map. Theor Appl Genet, 1996, 92:145-150
26. Kinishita T. Report of the committe on gene symbolization, nomenclature and linkage group. Rice Genet Newsl, 1991 ,8:2-37
27. Kinishita T. Report of the committe on gene symbolization, nomenclature and linkage group. Rice Genet Newsl, 1993 ,10:7-39
28. Beaumont V H, Rocheford T R, Widholm J M. Mapping the anther culture response genes in maize (Zea mays L.). Genome, 1995 ,38:968-975