Direct PCR-based genetic mapping of rice telomeric repeat associated sequences

Genome

Volumn 41, Issue 2, 1998, Pages 193-198

  Shen, Lishuang ^a   Zhu, Lihuang ^a  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

Genetic mapping; Oryza sativa L.; RAPD primer mediated PCR; Rice; Telomeric repeat; Telomeric repeat associated sequences

Indexed keywords

CHROMOSOMAL LOCALIZATION; GENETIC CROSS; GENETIC LINKAGE; HAPLOIDY; PLANT VARIETY; POLYMERASE CHAIN REACTION; PRIMER DNA; RANDOM AMPLIFIED POLYMORPHIC DNA; REPETITIVE DNA; RICE; TELOMERE;

EID: 0031854125     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g98-002     Document Type: Article

References (26)

1. Ashikawa, I., Kurata, N., Nagamura, Y., and Minobe, Y. 1994. Cloning and mapping of telomere-associated sequences from rice. DNA Res. 1: 67-76.
2. Biessmann, H., and Manson, J.M. 1994. Telomeric repeat sequences. Chromosoma, 103: 154-161.
3. Burr, B., Burr, F.A., Matz, E.C., Albertsen, M.C., and Stuber, C.W. 1992. Pinning down loose ends: mapping telomeres and factors affecting their length. Plant Cell, 4: 953-960.
4. Causse, M.A., Fulton, T.M., Cho, Y.G., Ahn, S.N., Chunwongse, J., Wu, K., Xiao, J., Yu, Z., Ronald, P.C., Harrington, S.E., Second, G., McCouch, S.R., and Tanksley, S.D. 1994. Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics, 138: 1251-1274.
5. Ganal. M.W., Lapitan, N.L., and Tanksley, S.D. 1991. Macrostructure of the tomato telomeres. Plant Cell, 3: 87-94.
6. Ganal, M.W., Broun, P., and Tanksley, S.D. 1992. Genetic mapping of tandemly repeated telomeric DNA sequences in tomato (Lycopersicon esculentum L.). Genomics, 14: 444-448.
7. Gardiner, J.M., Coe, E.H., and Chao, S. 1996. Cloning of maize telomeres by complementation in Saccharomyces cerevisiae. Genome, 39: 736-748.
8. Kilian, A., and Kleinhofs, A. 1992. Cloning and mapping of telomereassociated sequences from Hordeum vulgäre L. Mol. Gen. Genet. 235: 153-156.
9. Kosambi, D.D. 1944. The estimation of map distances from recombination values. Ann. Engen. 12: 172-175.
10. Kurata, N., Nagamura, Y., Yamamoto, K., Harushima, Y., Sue, N., Wu, J., Antonio, B.A., Shomura, A., Shimizu, T., Lin, S.Y., Inoue, T., Fukada, A., Shimano, T., Kuboki, Y., Toyoma, T., Miyamoto, Y., Kirihara. T., Hyasaka, K., Miyao, A., Monna, L., Zhong, H.S., Tamura, Y., Wang, Z.X., Momma, T., Umehara, Y., Yano, M., Sasaki, T., and Minobe, Y. 1994. A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nature Genet. 8: 365-372.
11. Lee, C., Sasi, R., and Lin, C.C. 1993. Interstitial localization of telomeric DNA sequences in the Indian muntjac chromosomes: further evidence for tandem chromosome fusions in the karyotype evolution of the Asian muntjacs. Cytogenet. Cell Genet. 63: 156-159.
12. Liang, P., and Pardee, A.B. 1992. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science (Washington, D.C.), 257: 967-971.
13. Liu, Y.G., and Whittier, R.F. 1995. Thermal asymmetric interlaced PCR; automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics, 25: 674-681.
14. Lu, C., Shen, L., Tan, Z., Xu, Y., He, P., Chen, Y., and Zhu, L. 1996. Comparative QTL mapping of agronomic quantitative traits across environments using a doubled haploid population. Theor. Appl. Genet. 93: 1211-1217.
15. Mao, L., Devos, K.M., Zhu, L.H., and Gale, M.D. 1997. Cloning and genetic mapping of wheat telomere-associated sequences. Mol. Gen. Genet. 254: 584-591.
16. n telomeric seqences. Proc. Natl. Acad. Sci. U.S.A. 86: 7049-7053.
17. Presting, G.G., Frary, A., Pillen, K., and Tanksley, S.D. 1996. Telomere homologous sequences occur near the centromeres of many tomato chromosomes. Mol. Gen. Genet. 25: 526-531.
18. Richards. E.J., and Ausubel, P.M. 1988. Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell, 53: 127-136.
19. Richards, E., Goodman, H.M., and Ausubel, P.M. 1991. The centromere region of Arabidopsis thaliana chromosome 1 contains telomere-similar sequences. Nucleic Acids Res. 19: 3351-3357.
20. Richards, E., Chao. S., Vongs, A., and Yang, J. 1992. Characterization of Arabidopsis thaliana telomeres isolated in yeast. Nucleic Acids Res. 20: 4039-4046.
21. Roder. M.S., Lapitan, N.L.V., Sorrells, M.E., and Tanksley, S.D. 1993. Genetic and physical mapping of barley telomeres. Mol. Gen. Genet. 238: 294-303.
22. Sambrook, J., Fritch, E.F., and Maniatis, T. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Habor, N.Y.
23. Schwarzacher, T., and Heslop-Harrison, J.S. 1991. In situ hybridization to plant telomeres using synthetic oligomers. Genome, 34: 317-323.
24. Singh, K., Ishii, T., Parco, A., Huang, N., Brar, D.S., and Khush, G.S. 1996. Centromere mapping and oriention of the molecular linkage map of rice (Oryza Sativa L.), Proc. Natl. Acad. Sci. U.S.A. 93: 6163-6168.
25. Wu, K.S., and Tanksley, S.D. 1993. Genetic and physical mapping of telomeres and macrosatellites of rice. Plant Mol. Biol. 22: 861-872.
26. Wu, K.S., Jones, R., Danneberger, L., and Scolnik, P.A. 1994. Detection of microsatellite polymorphisms without cloning. Nucleic Acids Res. 22: 3257-3258.