Universal correlation between energy gap and foldability for the random energy model and lattice proteins

Journal of Chemical Physics

Volumn 111, Issue 14, 1999, Pages 6599-6609

  Buchler, Nicolas E G ^a   Goldstein, Richard A ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0000945472     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.479951     Document Type: Article

References (57)

1. D. Amit, H. Gutfreund, and H. Sompolinsky, Phys. Rev. A 32, 1007 (1985).
2. D. Amit, H. Gutfreund, and H. Sompolinsky, Phys. Rev. Lett. 55, 1530 (1985).
3. P. Anderson, Proc. Natl. Acad. Sci. USA 80, 3386 (1983).
4. D. Rokhsar, P. Anderson, and D. Stein, J. Mol. Evol. 23, 119 (1986).
5. S. Kauffman and S. Levin, J. Theor. Biol. 128, 11 (1987).
6. C. Amitrano, L. Peliti, and M. Saber, J. Mol. Evol. 29, 513 (1989).
7. C. A. Macken and A. S. Perelson, Proc. Natl. Acad. Sci. USA 86, 6191 (1989).
8. S. Kauffman, E. Weinberger, and A. Perelson, Santa Fe Institute Studies in the Sciences of Complexity (Addison-Wesley, Reading, MA, 1988).
9. S. Kauffman and E. Weinberger, J. Theor. Biol. 141, 211 (1989).
10. M. S. Friedrichs and P. G. Wolynes, Science 246, 371 (1989).
11. M. S. Friedrichs, R. A. Goldstein, and P. G. Wolynes, J. Mol. Biol. 222, 1013 (1991).
12. J. D. Bryngelson and P. G. Wolynes, Proc. Natl. Acad. Sci. USA 84, 7524 (1987).
13. J. D. Bryngelson and P. G. Wolynes, J. Phys. Chem. 93, 6902 (1989).
14. E. I. Shakhnovich and A. M. Gutin, J. Phys. A 22, 1647 (1989).
15. E. I. Shakhnovich and A. M. Gutin, Biophys. Chem. 34, 187 (1989).
16. E. I. Shakhnovich and A. V. Finkelstein, Europhys. Lett. 9, 569 (1989).
17. J. D. Bryngelson and P. G. Wolynes, Biopolymers 30, 171 (1990).
18. J. D. Bryngelson, J. N. Onuchic, N. D. Socci, and P. G. Wolynes, Proteins 21, 167 (1995).
19. R. A. Goldstein, Z. A. Luthey-Schulten, and P. G. Wolynes, Proc. Natl. Acad. Sci. USA 89, 4918 (1992).
20. R. A. Goldstein, Z. A. Luthey-Schulten, and P. G. Wolynes, Proc. Natl. Acad. Sci. USA 89, 9029 (1992).
21. N. D. Socci and J. N. Onuchic, J. Chem. Phys. 101, 1519 (1994).
22. M. R. Betancourt and J. N. Onuchic, J. Chem. Phys. 103, 773 (1995).
23. P. E. Leopold, M. Montai, and J. N. Onuchic, Proc. Natl. Acad. Sci. USA 89, 8721 (1992).
24. H. Nymeyer, A. Garcia, and J. Onuchic, Proc. Natl. Acad. Sci. USA 95, 5921 (1998).
25. S. Govindarajan and R. A. Goldstein, Biopolymers 36, 43 (1995).
26. S. Govindarajan and R. A. Goldstein, Proc. Natl. Acad. Sci. USA 93, 3341 (1996).
27. S. Govindarajan and R. A. Goldstein, Biopolymers 42, 427 (1997).
28. S. Govindarajan and R. A. Goldstein, Proteins 29, 461 (1997).
29. E. I. Shakhnovich and A. M. Gutin, J. Chem. Phys. 93, 5967 (1990).
30. E. I. Shakhnovich and A. M. Gutin, Nature (London) 346, 773 (1990).
31. A. Šali, E. I. Shakhnovich, and M. J. Karplus, J. Mol. Biol. 235, 1614 (1994).
32. A. Šali, E. I. Shakhnovich, and M. J. Karplus, Nature (London) 369, 248 (1994).
33. E. I. Shakhnovich and A. M. Gutin, Proc. Natl. Acad. Sci. USA 90, 7195 (1993).
34. A. M. Gutin, V. I. Abkevich, and E. I. Shakhnovich, Proc. Natl. Acad. Sci. USA 92, 1282 (1995).
35. B. Derrida and G. Toulouse, J. Phys. (France) Lett. 46, L401 (1985).
36. B. Derrida and E. Gardner, J. Phys. C 19, 2253 (1986).
37. C. J. Camacho and D. Thirumalai, Proc. Natl. Acad. Sci. USA 90, 6369 (1993).
38. D. K. Klimov and D. Thirumalai, Phys. Rev. Lett. 76, 4070 (1996).
39. D. K. Klimov and D. Thirumalai, J. Chem. Phys. 109, 4119 (1998).
40. T. L. Chiu and R. A. Goldstein, J. Chem. Phys. 107, 4408 (1997).
41. A. R. Dinner, V. Abkevich, E. I. Shakhnovich, and M. Karplus, Proteins 35, 34 (1999).
42. B. Derrida, Phys. Rev. Lett. 45, 79 (1980).
43. B. Derrida, Phys. Rev. B 24, 2613 (1981).
44. W. Wilbur and J. Liu, Macromolecules 27, 2432 (1994).
45. W. Wilbur, F. Major, J. Spouge, and S. Bryant, Biopolymers 38, 447 (1996).
46. C. Anfinsen, Science 181, 223 (1973).
47. S. Govindarajan and R. A. Goldstein, Proc. Natl. Acad. Sci. USA 95, 5545 (1998).
48. A. M. Gutin and E. I. Shakhnovich, J. Chem. Phys. 98, 8174 (1993).
49. V. S. Pande, A. Y. Grosberg, and T. Tanaka, Rev. Mod. Phys. (in press).
50. S. S. Plotkin, J. Wang, and P. G. Wolynes, J. Chem. Phys. 106, 2932 (1997).
51. B. A. Shoemaker, J. Wang, and P. G. Wolynes, Proc. Natl. Acad. Sci. USA 94, 777 (1997).
52. A. V. Finkelstein and O. B. Ptitsyn, Prog. Biophys. Mol. Biol. 50, 171 (1987).
53. A. V. Finkelstein, A. M. Gutin, and A. Y. Badretdinov, FEBS Lett. 325, 23 (1993).
54. V. S. Pande, A. Y. Grosberg, C. Joerg, and T. Tanaka, Phys. Rev. Lett. 76, 3987 (1996).
55. S. S. Plotkin, J. Wang, and P. G. Wolynes, Phys. Rev. E 53, 6271 (1996).
56. H. S. Chan and K. A. Dill, Phys. Today 46, 24 (1993).
57. S. Miyazawa and R. L. Jernigan, Macromolecules 18, 534 (1985).