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Volumn 107, Issue 2, 1997, Pages 425-430

Semiempirical methods with conjugate gradient density matrix search to replace diagonalization for molecular systems containing thousands of atoms

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EID: 0000876466     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.474404     Document Type: Article
Times cited : (140)

References (44)
  • 7
    • 0001554805 scopus 로고
    • X. P. Li, R. W. Nunes, and D. Vanderbilt, Phys. Rev. B 47, 10 891 (1993); R. W. Nunes, and D. Vanderbilt, ibid. 50, 17 611 (1994).
    • (1994) Phys. Rev. B , vol.50 , pp. 17611
  • 29
    • 0001193314 scopus 로고
    • R. C. Bingham, M. Dewar, and Lo, J. Am. Chem. Soc. 97, 1285, 1294, 1302, 1307 (1975).
    • (1975) J. Am. Chem. Soc. , vol.1302 , pp. 1307
  • 33
    • 3743081313 scopus 로고    scopus 로고
    • note
    • The polyglycine chains are similar to those described in Refs. 4, 37, and 38. Coordinates for these molecules are available from us.
  • 34
    • 3743112378 scopus 로고    scopus 로고
    • note
    • The water clusters up to 150 water molecules are those used in Ref. 39. We obtained the coordinates from the authors of Ref. 39. Coordinates for the 300 and 600 water molecule cluster are available from us.
  • 38
    • 3743083579 scopus 로고    scopus 로고
    • note
    • The 368 atom RNA molecule is from Ref. 40. The 651 atom DNA molecule is from Ref. 41 with sodium atoms added to balance the charge. The 1576 atom RNA molecule is from Ref. 42. Hydrogens were added with Xplor. All larger RNA molecules were made from replicating the 1576 atom RNA molecule.


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