Processing of fibrillarin-associated snoRNAs from pre-mRNA introns: An exonucleolytic process exclusively directed by the common stem-box terminal structure

Biochimie

Volumn 78, Issue 6, 1996, Pages 443-456

  Cavaille J ^a   Bachellerie, J P ^a  

^a UNIVERSITÉ DE TOULOUSE   (France)

Author keywords

Exonucleases; Introns; RNA processing; SnoRNA; Splicing

Indexed keywords

MESSENGER RNA PRECURSOR; NUCLEAR PROTEIN; SMALL NUCLEAR RNA;

ARTICLE; BASE PAIRING; INTRON; LYSIS; NUCLEOLUS; RNA DEGRADATION; RNA PROCESSING; RNA SPLICING; RNA STRUCTURE;

EID: 0029826456     PISSN: 03009084     EISSN: None     Source Type: Journal    
DOI: 10.1016/0300-9084(96)84751-1     Document Type: Article

References (45)

1. 1 Tollervey D, Hurt EC (1990) The role of small nucleolar RNAs in ribosome synthesis. Mol Biol Rep 14, 103-106
2. 2 Fournier MJ, Maxwell ES (1993) The nucleolar snRNAs: catching up with the spliceosomal snRNAs. Trends Biochem Sci 18, 131-135
3. 3 Maxwell ES, Fournier MJ (1995) The small nucleolar RNAs. Annu Rev Biochem 35, 897-934
4. 4 Bachellerie JP, Michot B, Nicoloso M, Balakin A, Ni J, Fournier MJ (1995) Antisense snoRNAs: A family of nucleolar RNAs with long complementarities to rRNAs. Trends Biochem Sci 20, 261-264
5. 5 Tycowski KT, Shu MD, Steitz JA (1996) A mammalian gene with introns instead of exons generating stable RNA products. Nature 379, 464-466
6. 6 Tollervey D, Lehtonen H, Jansen R, Kern H, Hurt EC (1993) Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell 72, 443-457
7. 7 Huang GM, Jarmolowski A, Struck JCR, Fournier M. (1992) Accumulation of U14 small nuclear RNA in Saccharomyces cerevisiae requires box C, box D, and a 5′, 3′ terminal stem. Mol Cell Biol 12, 4456-4463
8. 8 Leverette RD, Andrews MT, Maxwell ES (1992) Mouse U14 snRNA is a processed intron of the cognate hsc70 heat shock pre-messenger RNA. Cell 71, 1215-1221
9. 9 Tycowski KT, Shu MD, Steitz JA (1993) A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3. Genes Dev 7, 1176-1190
10. 10 Fragapane P, Prislei S, Michienzi A, Caffarelli E, Bozzoni I (1993) A novel small nucleolar RNA (U16) is encoded inside a ribosomal protein intron and originates by processing of the pre-mRNA. EMBO J 12, 2921-2928
11. 11 Nicoloso M, Caizergues-Ferrer M, Michot B, Azum MC, Bachellerie JP (1994) U20, a novel small nucleolar RNA, is encoded in an intron of the nucleolin gene in mammals. Mol Cell Biol 14, 5766-5776
12. 12 Qu LH, Nicoloso M, Michot B, Azum MC, Caizergues-Ferrer M, Renalier MH, Bachellerie JP (1994) U21, a novel small nucleolar RNA with a 13 nt complementarity to 28S rRNA is encoded in an intron of ribosomal protein L5 gene in chicken and mammals. Nucleic Acids Res 22, 4073-4081
13. 13 Tycowski KT, Shu MD, Steitz JA (1994) Requirement for intron-encoded U22 small nucleolar RNA in 18S rRNA maturation. Science 266, 1558-1561
14. 14 Qu LH, Henry Y, Nicoloso M, Michot B, Azum MC, Renalier MH, Caizergues-Ferrer M, Bachellerie JP (1995) U24, a novel intron-encoded small nucleolar RNA with two 12 nt long, phylogenetically conserved complementarities to 28S rRNA. Nucleic Acids Res 23, 2669-2676.
15. 15 Kiss T, Filipowicz W (1993) Small nucleolar RNAs encoded by introns of the human cell cycle regulatory gene RCC1. EMBO J 12, 2913-2920
16. 16 Prislei S, Michienzi A, Presutti C, Fragapane P, Bozzoni I (1993) Two different snoRNAs are encoded in introns of amphibian and human L1 ribosomal protein genes. Nucleic Acids Res 21, 5824-5830
17. 17 Sollner-Webb B (1993) Novel intron-encoded small nucleolar RNAs. Cell 75, 403-405
18. 18 Filipowicz W, Kiss T (1993) Structure and function of nucleolar snRNPs. Mol Biol Rep 18, 149-156 (published erratum appeared in (1993) Mot Biol Rep 18, 235)
19. XS8, a small nucleolar RNA with a 12 nt complementarity to 18S rRNA and coded by a sequence repeated in the six introns of Xenopus laevis ribosomal protein S8 gene. Nucleic Acids Res 22, 732-741
20. 20 Pellizzoni L, Crosio C, Campioni N, Loreni F, Pierandrei-Amaldi P (1994) Different forms of U15 snoRNA are encoded in the introns of the ribosomal protein S1 gene of Xenopus laevis. Nucleic Acids Res 22, 4607-4613
21. 21 Reddy R, Busch H (1988) Small nuclear RNAs: RNA sequences, structure, and modifications. In: Structure of major and minor small nuclear ribonucleoprotein particles (Birnstiel ML, ed), Springer-Verlag, Berlin, 1-37
22. 22 Tyc K, Steitz JA (1989) U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. EMBO J 8, 3113-3119
23. 23 Dahlberg JE, Lund E (1988) The genes and transcription of the major small nuclear RNAs. In: Structure of major and minor small nuclear ribonucleoprotein particles (Birnstiel ML, ed), Springer-Verlag, Berlin, 38-70
24. 24 Barbhaiya H, Leverette RD, Liu J, Maxwell ES (1994) Processing of U14 small nucleolar RNA from three different introns of the mouse 70-kDa-cognate-heat-shock-protein pre-messenger RNA. Eur J Biochem 226, 765-771
25. 25 Caffarelli E, Arese M, Santoro B, Fragapane P, Bozzoni I (1994) In vitro study of processing of the intron-encoded U16 small nucleolar RNA in Xenopus laevis. Mol Cell Biol 14, 2966-2974
26. 26 Kiss T, Filipowicz W (1995) Exonucleolytic processing of small nucleolar RNAs from pre-mRNA introns.Genes Dev 9, 1411-1424
27. 27 Cecconi F, Mariottini P, Amaldi F (1995) The Xenopus intron-encoded U17 snoRNA is produced by exonucleolytic processing of its precursor in oocytes. Nucleic Acids Res 23, 4670-4676
28. 28 Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
29. 29 Hadjiolova K, Normann A, Cavaillé J, Soupène E, Mazan S, Hadjiolov A, Bachellerie JP (1994) Processing of truncated mouse or human rRNA transcribed from ribosomal minigenes transfected into mouse cells. Mol Cell Biol 14, 4044-4056
30. 30 Hadjiolova K, Hadjiolov A, Bachellerie JP (1995) Actinomycin D stimulates the transcription of rRNA minigenes transfected into mouse cells. Implications for the in vivo hypersensitivity of rRNA gene transcription. Eur J Biochem 228, 605-615
31. 31 Bourbon HM, Amalric F (1990) Nucleolin gene organization in rodents: highly conserved sequences within three of the 13 introns. Gene 88, 187-196
32. 32 Kunkel TA (1985) Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc Natl Acad Sci USA 82, 488-492
33. 33 Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162, 156-159
34. 34 Nicoloso M, Qu LH, Michot B, Bachellerie JP (1996) Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2′-O-ribose methylation of rRNAs. J Mol Biol 260, 178-195
35. 35 Santoro B, De Gregorio E, Caffarelli E, Bozzoni I (1994) RNA-protein interactions in the nuclei of Xenopus oocytes: Complex formation and processing activity on the regulatory intron of ribosomal protein gene L1. Mol Cell Biol 14, 6975-6982
36. 36 Caffarelli E, Fatica A, Prislei S, De Gregorio E, Fragapane P, Bozzoni I (1996) Processing of the intron-encoded U16 and U18 snoRNAs: the conserved C and D boxes control both the processing reaction and the stability of the mature snoRNA. EMBO J 15, 1121-1131
37. 37 Renalier MH, Nicoloso M, Qu LH, Bachellerie JP (1996) SnoRNA U21 is also intron-encoded in Drosophila melanogaster but in a different host-gene as compared to warm-blooded vertebrates. FEBS Lett 379, 212-216
38. 38 Bachellerie JP, Nicoloso M, Qu LH, Michot B, Caizergues-Ferrer M, Cavaillé J, Renalier MH (1995) Novel intron-encoded small nucleolar RNAs with long sequence complementarities to mature rRNAs involved in ribosome biogenesis. Biochem Cell Biol 73, 835-843
39. 39 Baserga SJ, Yang XW, Steitz JA (1991) An intact box C sequence in the U3 snRNA is required for binding of fibrillarin, the protein common to the major family of nucleolar snRNPs. EMBO J 10, 2645-2651
40. 40 Lubben B, Marshallsay C, Rottman N, Lührmann R (1993) Isolation of U3 snoRNP from CHO cells: a novel 55 kDa protein binds to the central part of U3 snoRNA. Nucleic Acids Res 21, 5377-5385
41. 41 Lubben B, Fabrizio P, Kastner B, Lührmann R (1995) Isolation and characterization of the small nucleolar ribonucloprotein particle snR30 from S. cerevisiae. J Biol Chem 270, 11549-11554
42. 42 Raska I, Andrade LEC, Ochs RL, Chan EKL, Chang CM, Roos G, Tan EM (1991) Immunological and ultrastructural studies of the nuclear coiled body with autoimmune antibodies. Exp Cell Res 195, 27-37
43. 43 Cavaillé J, Nicholso M, Bachellerie JP (1996) Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature, in press
44. 44 Eichler DC, Craig N (1994) Processing of eukaryotic ribosomal RNA. Progr Nucleic Acid Res Mol Biol 49, 197-239
45. 45 Sollner-Webb B, Tyc K, Steitz JA (1995) Ribosomal RNA processing in eukaryotes. In: Ribosomal RNA structure, evolution, processing, and function in protein biosynthesis (Zimmermann RA, Dahlberg AE, eds), Telford, Caldwell, New Jersey, 469-490