Folding, design, and determination of interaction potentials using off-lattice dynamics of model heteropolymers

Physical Review Letters

Volumn 81, Issue 15, 1998, Pages 3287-3290

  Clementi, Cecilia ^a,b   Maritan, Amos ^a,b   Banavar, Jayanth R ^c  

^a SISSA   (Italy)

^b ABDUS SALAM INTERNATIONAL CENTRE FOR THEORETICAL PHYSICS   (Italy)

^c PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0000533961     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.81.3287     Document Type: Article

References (22)

1. H. Frauenfelder, S. G. Sligar, and P. G. Wolynes: Science, 254: 1598 (1991)
2. P. E. Leopold, M. Montal, and J. N. Onuchic: Proc. Natl. Acad. Sci. U.S.A., 89: 8721 (1992)
3. J. D. Bryngelson, J. N. Onuchic, and P. G. Wolynes: Proteins: Struct. Funct. Genet., 21: 167 (1995)
4. J. N. Onuchic, P. G. Wolynes, and N. D. Socci: Proc. Natl. Acad. Sci. U.S.A., 92: 3626 (1995)
5. N. D. Socci, J. N. Onuchic, and P. G. Wolynes: J. Chem. Phys., 104: 5860 (1996).
6. T. Veitshans, D. K. Klimov, and D. Thirumalai: Folding Des., 2: 1 (1996)
7. R. M. Scheek, W. F. Van Gunsteren, and R. Kaptein: Methods Enzymol., 177: 204 (1989).
8. L. Casetti: Phys. Scr., 51: 29 (1995).
9. J. L. Lebowitz, J. K. Percus, and L. Verlet: Phys. Rev., 153: 250 (1967).
10. M. Vendruscolo, E. Kussell, and E. Domany: Folding Des., 2: 295 (1997)
11. L. Mirny and E. Domany: Proteins: Struct. Funct. Genet., 26: 391 (1996).
12. J. D. Honeycutt and H. C. Andersen: J. Phys. Chem., 91: 4950 (1987).
13. Y. Zhou, M. Karplus, J. M. Wichert, and C. K. Hall: J. Chem. Phys., 107: 10 691 (1997).
14. W. Kabsch: Acta Crystallogr. Sect. A, 32: 922 (1976)
15. W. Kabsch: Acta Crystallogr. Sect. A: 34: 827 (1978).
16. Z. Dauter, L. C. Sieker, and K. S. Wilson: Acta Crystallogr. Sect. B, 48: 42 (1992).
17. E. Shakhnovich and A. M. Gutin: Protein Eng., 6: 793 (1993)
18. E. Shakhnovich: Phys. Rev. Lett., 72: 3907 (1994).
19. G. Iori, E. Marinari, and G. Parisi: J. Phys. A, 24: 5349 (1991)
20. G. Iori, E. Marinari, G. Parisi, and M. V. Struglia: Physica (Amsterdam), 185A: 98 (1992)
21. F. Seno, A. Maritan, and J. R. Banavar: Proteins: Struct. Funct. Genet., 30: 244 (1998)
22. J. van Mourik, C. Clementi, A. Maritan, F. Seno, and J. R. Banavar (to be published).