메뉴 건너뛰기




Volumn 24, Issue 4-6, 2000, Pages 325-340

Effect of cation concentration on molecular dynamics simulations of UDP-glucose

Author keywords

Molecular dynamics; Nucleotide sugar; UDP glucose

Indexed keywords


EID: 0000051235     PISSN: 08927022     EISSN: None     Source Type: Journal    
DOI: 10.1080/08927020008022379     Document Type: Article
Times cited : (3)

References (25)
  • 1
    • 77956968010 scopus 로고
    • Biosynthesis of saccharides from glycopyranosyl esters of nucleotides
    • (a) Neufeld, E. F. and Hassid, W. Z. (1963). "Biosynthesis of saccharides from glycopyranosyl esters of nucleotides", Adv. Carbohydr. Chem. Biochem., 18, 309.
    • (1963) Adv. Carbohydr. Chem. Biochem. , vol.18 , pp. 309
    • Neufeld, E.F.1    Hassid, W.Z.2
  • 3
    • 0023017284 scopus 로고
    • Biosynthesis of bacterial polysaccharide chains composed of repeating units
    • (c) Shibaev, V. N. (1986). "Biosynthesis of bacterial polysaccharide chains composed of repeating units", Adv. Carbohydr. Chem. Biochem., 44, 277.
    • (1986) Adv. Carbohydr. Chem. Biochem. , vol.44 , pp. 277
    • Shibaev, V.N.1
  • 4
    • 0021891884 scopus 로고
    • Assembly of asparagine-linked oligosaccharides
    • Kornfeld, R. and Kornfeld, S. (1985). "Assembly of asparagine-linked oligosaccharides", Annu. Rev. Biochem., 54, 631.
    • (1985) Annu. Rev. Biochem. , vol.54 , pp. 631
    • Kornfeld, R.1    Kornfeld, S.2
  • 5
    • 0001230025 scopus 로고
    • Structure of disodium uridine diphosphoglucose dihydrate
    • Sugawara, Y. and Iwasaki, H. (1984)."Structure of disodium uridine diphosphoglucose dihydrate", Acta Crystallogr., C40, 389.
    • (1984) Acta Crystallogr. , vol.C40 , pp. 389
    • Sugawara, Y.1    Iwasaki, H.2
  • 6
    • 0042357447 scopus 로고    scopus 로고
    • Potential energy hypersurfaces of nucleotide-sucres
    • Petrova, P., Koca, J. and Imberty, A., "Potential energy hypersurfaces of nucleotide-sucres", J. Am. Chem. Soc., 121, 5535.
    • J. Am. Chem. Soc. , vol.121 , pp. 5535
    • Petrova, P.1    Koca, J.2    Imberty, A.3
  • 7
    • 0000100871 scopus 로고    scopus 로고
    • Ab initio molecular study of the conformational behavior of the sugar-phosphate linkage
    • Tvaroska, I., Andre, I. and Carver, J. P. (1999). "Ab initio molecular study of the conformational behavior of the sugar-phosphate linkage", J. Phys. Chem. B, 103, 2560.
    • (1999) J. Phys. Chem. B , vol.103 , pp. 2560
    • Tvaroska, I.1    Andre, I.2    Carver, J.P.3
  • 8
    • 0029633186 scopus 로고
    • Amber, a package of computer programs
    • Pearlman, D. A. et al. (1995). "AMBER, a package of computer programs", Comp. Phys: Commun., 91, 1.
    • (1995) Comp. Phys: Commun. , vol.91 , pp. 1
    • Pearlman, D.A.1
  • 9
    • 0003700434 scopus 로고    scopus 로고
    • University of California, San Francisco
    • Case, D. A. et al. (1997). AMBER; 5.0 Ver., University of California, San Francisco.
    • (1997) Amber; 5.0 Ver.
    • Case, D.A.1
  • 10
    • 0002533005 scopus 로고
    • Computer program Cicada-traveling along a conformational potential energy hypersurface
    • Koca, J. and Matyska, L. (1994). "Computer program CICADA-traveling along a conformational potential energy hypersurface", J. Mol. Struct. (THEOCHEM), 308, 13.
    • (1994) J. Mol. Struct. (Theochem) , vol.308 , pp. 13
    • Koca, J.1    Matyska, L.2
  • 11
    • 0029736391 scopus 로고    scopus 로고
    • Mechanism and specificity of human a-1,3-fucosyltransferase V
    • Murray, B. W., Takayama, S., Schultz, J. and Wong, C. H. (1996). "Mechanism and specificity of human a-1,3-fucosyltransferase V", Biochemistry, 34, 11183.
    • (1996) Biochemistry , vol.34 , pp. 11183
    • Murray, B.W.1    Takayama, S.2    Schultz, J.3    Wong, C.H.4
  • 12
    • 0032584665 scopus 로고    scopus 로고
    • A common motif of eukaryotic glycosyltransferases is essential for the enzyme activity of large clostridial cytotoxins
    • Busch, C., Hofmann, F., Selzer, J., Munro, S., Jeckel, D. and Aktories, K. (1998). "A common motif of eukaryotic glycosyltransferases is essential for the enzyme activity of large clostridial cytotoxins", J. Biol. Chem., 273, 19566.
    • (1998) J. Biol. Chem. , vol.273 , pp. 19566
    • Busch, C.1    Hofmann, F.2    Selzer, J.3    Munro, S.4    Jeckel, D.5    Aktories, K.6
  • 13
    • 0031749203 scopus 로고    scopus 로고
    • Sequence-function relationships of procaryotic and eucaryotic galactosyltransferases
    • Breton, C., Bettler, E., Joziasse, D. H., Geremia, R. A. and Imberty, A. (1998). "Sequence-function relationships of procaryotic and eucaryotic galactosyltransferases", J. Biochem., 123, 1000.
    • (1998) J. Biochem. , vol.123 , pp. 1000
    • Breton, C.1    Bettler, E.2    Joziasse, D.H.3    Geremia, R.A.4    Imberty, A.5
  • 15
    • 0344796204 scopus 로고
    • Ion-water interaction potentials derived from free energy perturbation simulations
    • Aqvist, J. (1990). "Ion-water interaction potentials derived from free energy perturbation simulations", J. Phys. Chem., 94, 8021.
    • (1990) J. Phys. Chem. , vol.94 , pp. 8021
    • Aqvist, J.1
  • 16
    • 33646940952 scopus 로고
    • Numerical integration of the Cartesian equations of motion of a system with constrains: Molecular dynamics of n-alkanes
    • Ryckaert, J. P., Ciccotti, G. and Berendsen, H. J. C. (1977). "Numerical integration of the Cartesian equations of motion of a system with constrains: molecular dynamics of n-alkanes", J. Comp. Phys., 23, 327.
    • (1977) J. Comp. Phys. , vol.23 , pp. 327
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 19
    • 25744460167 scopus 로고
    • An uncommon nucleotide conformation shown by molecular structure of deoxyuridine-5'-phosphate and nucleic acid stereochemistry
    • Viswamitra, M. A., Seshadri, T. P., Hosur, M. V., Post, M. L. and Kennard, O. (1975). "An uncommon nucleotide conformation shown by molecular structure of deoxyuridine-5'-phosphate and nucleic acid stereochemistry", Acta Crystallogr., Sect. A, 31, S45.
    • (1975) Acta Crystallogr., Sect. A , vol.31
    • Viswamitra, M.A.1    Seshadri, T.P.2    Hosur, M.V.3    Post, M.L.4    Kennard, O.5
  • 20
  • 21
    • 0017895903 scopus 로고
    • The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides
    • Manning, G. S. (1978). "The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides", Q. Rev. Biophys., 11, 179.
    • (1978) Q. Rev. Biophys. , vol.11 , pp. 179
    • Manning, G.S.1
  • 22
    • 0028086928 scopus 로고
    • Ion-induced stabilization of the G-DNA quadruplex: Free energy perturbation studies
    • Ross, W. S. and Hardin, C. C. (1994). "Ion-induced stabilization of the G-DNA quadruplex: Free energy perturbation studies", J. Am. Chem. Soc., 116, 6070.
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 6070
    • Ross, W.S.1    Hardin, C.C.2
  • 23
    • 0030782840 scopus 로고    scopus 로고
    • Influence of magnesium ions on duplex DNA structural, dynamic, and solvation properties
    • MacKerell, A. D. Jr. (1997). "Influence of magnesium ions on duplex DNA structural, dynamic, and solvation properties", J. Phys. Chem., 101, 646.
    • (1997) J. Phys. Chem. , vol.101 , pp. 646
    • MacKerell A.D., Jr.1
  • 25
    • 0344566244 scopus 로고
    • Thermodynamic quantities associated with the interaction of adenosinediphosphoric and adenosinemonophosphoric acids with metal ions
    • Taqui Khan, M. M. and Martell, A. E. (1967). "Thermodynamic quantities associated with the interaction of adenosinediphosphoric and adenosinemonophosphoric acids with metal ions", J. Am. Chem. Soc., 89, 5585.
    • (1967) J. Am. Chem. Soc. , vol.89 , pp. 5585
    • Taqui Khan, M.M.1    Martell, A.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.