Novel DNA-binding characteristics of a protein associated with DNA polymerase-α in pea

Plant Journal

Volumn 12, Issue 2, 1997, Pages 357-365

  Burton, Sara K ^a   Hof, Jack Van't ^b   Bryant, John A ^a  

^a UNIVERSITY OF EXETER   (United Kingdom)

^b BROOKHAVEN NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA BINDING PROTEIN; DNA DIRECTED DNA POLYMERASE ALPHA; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE; VIRUS DNA;

ARTICLE; BINDING SITE; CHEMISTRY; CYTOLOGY; ELECTRON MICROSCOPY; METABOLISM; PEA; PLANT; PLASMID; ULTRASTRUCTURE;

BINDING SITES; DNA; DNA POLYMERASE II; DNA, VIRAL; DNA-BINDING PROTEINS; MICROSCOPY, ELECTRON; PEAS; PLANT SHOOTS; PLASMIDS; POLY(ADP-RIBOSE) POLYMERASES;

PISUM SATIVUM;

EID: 9844254489     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1997.12020357.x     Document Type: Article

References (37)

1. Al-Rashdi, J. and Bryant, J.A. (1994) Purification of a DNA-binding protein from a multi-protein complex associated with DNA polymerase-α in pea (Pisum sativumi). J. Exp. Bot. 45, 1867-1871.
2. Althaus, F.R. and Richter, C. (1987) ADP-ribosylation of proteins: enzymology and biological significance. Mol. Biol. Biochem. Biophys. 37, 1-125.
3. Anderson, L.E., Wang, X.W. and Gibbons, J.T. (1995) Three enzymes of carbon metabolism or their antigenic analogues in pea leaf nuclei. Plant Physiol. 108, 659-667.
4. Bianchi, M.E., Beltrame, M. and Pontiggia, A. (1993) Escherichia coli Hu protein is the functional analog of mammalian HMGI protein. J. Cell Biochem. 517e, 288 (Abstract).
5. Bonnefoy, E., Takahashi, M. and Yaniv, J.R. (1994) DNA-binding parameters of the Hu protein of Escherichia coli to cruciform DNA. J. Mol. Biol. 242, 116-129.
6. Bryant, J.A., Fitchett, P.N., Hughes, S.G. and Sibson, D.R. (1992) DNA polymerase-α in pea is part of a large multiprotein complex. J. Exp. Bot. 43, 31-45.
7. Burton, S.K. (1993) DNA-binding proteins associated with DNA polymerase-α in pea (Pisum sativum). PhD Thesis, University of Exeter.
8. Castaing, B., Zelwer, C., Laval, J. and Boiteux, S. (1995) Hu protein of Escherichia coli binds specifically to DMA that contains single-strand breaks or gaps. J. Biol. Chem. 270, 10 291-10 296.
9. Davies, N.D. (1989) Study of the initiation of DNA replication in pea (Pisum sativum). PhD Thesis, University of Exeter.
10. Gottlieb, T.M. and Jackson, S.P. (1993) The DMA-dependent protein kinase: requirement for ends and association with Ku antigen. Cell, 72, 131-142.
11. Grey, J.E. and Bryant, J.A. (1984) Changes in the activity of poly(adenosine-diphosphate-ribose) polymerase during germination of pea. Phytochemistry, 23, 477-478.
12. Griffith, A.J., Blier, P.R., Mimori, T. and Hardin, J.A. (1992) Ku polypeptides synthesized in vitro assemble into complexes which recognize ends of double-stranded DNA. J. Biol. Chem. 267, 331-338.
13. Haykinson, M.J. and Johnson, B.C. (1993) DNA looping and the helical repeat in vitro and in vivo: effect of Hu protein and enhancer location on Hin invertasome assembly. EMBO J. 12, 2503-2512.
14. Hernandez, P., Bjerknes, C.A., Lamm, S.S. and Van't Hof, J. (1988) Proximity of an ARS consensus to a replication origin of pea (Pisum sativum). Plant Mol. Biol. 10, 413-422.
15. Hernandez, P., Martin-Parras, I., Martinez-Robles, M.L. and Schvartzman, J.B. (1993) Conserved features in the mode of replication of eukaryotic ribosomal RNA genes. EMBO J. 12, 1475-1485.
16. Jazwinski, S.M. and Edelman, G.M. (1984) Evidence for participation of a multiprotein complex in yeast DNA replication in vitro. J. Biol. Chem. 259, 6852-6857.
17. Jindal, H.K. and Vishwanatha, J.K. (1990) Purification and characterisation of primer recognition proteins from HeLa cells. Biochemistry, 29, 4767-4773.
18. Lamothe, P., Baril, B., Chi, L., Lee, L. and Baril, E. (1981) Accessory proteins for DNA polymerase-α activity with single-stranded DNA templates. Proc. Natl Acad. Sci. USA, 78, 4723-4727.
19. Lehman, I.R. and Kaguni, L.S. (1989) DNA polymerase-α. J. Biol. Chem. 259, 6852-6857.
20. Malkas, L.H. and Baril, E.F. (1989) Sequence recognition protein for the 17 base-pair A + T rich tract in the replication origin of simian virus 40 DNA. Proc. Natl Acad. Sci. USA, 78, 70-74.
21. May, G., Sutton, C. and Gould, H. (1991) Purification and characterization of Ku-2, an octomer-binding protein related to the autoantigen Ku. J. Biol. Chem. 266, 3052-3059.
22. Mimori, T., Akizuki, M., Vamagato, H., Inada, S., Yoshida, S. and Homma, M. (1981) Characterization of a high molecular weight acidic protein recognized by antibodies in sera from patients with polymyositis-scleroderma overlap. J. Clin. Invest. 68, 611-620.
23. Mimori, T., Hardin, J.A. and Steitz, J.A. (1986) Characterization of the DNA-binding protein antigen Ku recognized by autoantibodies from patients with rheumatic disorders. J. Biol. Chem. 261, 2274-2278.
24. Oberto, J. and Rouviereyaniv, J. (1996) Serratia marcescens contains a heterodimeric Hu protein like Escherichia coli and Salmonella typhimurum. J. Bacteriol. 178, 293-297.
25. Paillard, S. and Strauss, F. (1991) Analysis of the mechanism of interaction of simian Ku protein with DNA. Nucl. Acids Res. 19, 5619-5624.
26. Porges, A.J., Ng, T. and Reeves, W.H. (1990) Antigenic determinants of the Ku (p70/p80) autoantigen are poorly conserved between species. J. Immunol. 145, 4225-4228.
27. 2 function as primer recognition proteins. J. Biol. Chem. 258, 9810-9819.
28. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
29. Stuiver, M.H., Coenjaerts, F.E.J. and van der Vliet, P.C. (1990) The autoantigen Ku is indistinguishable from NF IV, a protein forming multimeric protein-DNA complexes. J. Exp. Med. 172, 1049-1054.
30. Sutherland, B.M., Bennett, P.V., Conlon, K., Epling, G.A. and Sutherland, J.C. (1992) Quantitation of supercoiled DNA cleavage in nonradioactive DNA: application to ionizing radiation and synthetic endonuclease cleavage. Anal. Biochem. 201, 80-86.
31. Tempel, N. and Leadbetter, M.C. (1988) Quality films from carbon fibre evaporation for thorough coverage of TEM grids. In Proceedings of the 46th Annual Meeting of the Electron Microscopy Society of America. San Francisco, California, USA: San Francisco Press, pp. 418-419.
32. Toth, E.C., Marusic, L., Ochem, A., Patthy, A., Pangor, S., Giacca, M. and Falaschi, A. (1993) Interactions of USF and Ku antigen with a human DMA region containing a replication origin. Nucl. Acids Res. 21, 3257-3263.
33. Van't Hof, J. and Lamm, S.S. (1992) Site of initiation of replication of the ribosomal genes of pea (Pisum sativum) detected by two-dimensional electrophoresis. Plant Mol. Biol. 20, 317-321.
34. de Vries, E., van Driel, W., Bergsma, W.G., Arnberg, A.C. and van der Vliet, P.C. (1989) HeLa nuclear protein recognizing DMA termini and translocating on DMA forming a regular DNA-multimeric protein complex. J. Mol. Biol. 208, 65-78.
35. Waga, S. and Stillman, B. (1994) Anatomy of a DNA-replication fork revealed by reconstitution of SV40 DNA replication in vitro. Nature, 369, 207-212.
36. Williams, R.C. (1977) Use of polylysine for adsorption of nucleic acids and enzymes to electron microscope specimen films. Proc. Natl Acad. Sci. USA, 74, 2311-2315.
37. Zhang, W.W. and Yaneva, M. (1992) On the mechanisms of Kuprotein binding to DNA. Biochem. Biophys. Res. Commun. 186, 574-579.