Restriction endonuclease analysis of highly repetitive DNA as a phylogenetic tool

Journal of Molecular Evolution

Volumn 45, Issue 3, 1997, Pages 332-336

  Grechko, V V ^a   Fedorova, L V ^a   Fedorov, A N ^b   Slobodyanyuk, S Ya ^c   Ryabinin, D M ^d   Melnikova, M N ^e   Bannikova, A A ^e   Lomov, A A ^e   Sheremet'eva, V A ^e   Gorshkov, V A ^e   Sevostyanova, G A ^f   Semenova, S K ^d   Ryskov, A P ^d   Mednikov, B M ^e   Darevsky, I S ^g  

^a ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^b INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

^c ENERGY SYSTEMS INSTITUTE   (Russian Federation)

^d INSTITUTE OF GENE BIOLOGY   (Russian Federation)

^e MOSCOW STATE UNIVERSITY   (Russian Federation)

^f MOSCOW STATE PEDAGOGICAL UNIVERSITY   (Russian Federation)

^g ZOOLOGICAL INSTITUTE   (Russian Federation)

Author keywords

Lacertidae; Mammalia; Molecular phylogeny; Repetitive DNA sequences; Taxonprint

Indexed keywords

REPETITIVE DNA; RESTRICTION ENDONUCLEASE;

ARTICLE; DNA POLYMORPHISM; DNA SEQUENCE; HUMAN; MAMMAL; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; SPECIES DIFFERENCE; TAXONOMY;

ANIMALS; CLASSIFICATION; CONTINENTAL POPULATION GROUPS; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; ENDONUCLEASES; GENETIC MARKERS; HEDGEHOGS; HUMANS; PHYLOGENY; REPETITIVE SEQUENCES, NUCLEIC ACID; RESTRICTION MAPPING; SPECIES SPECIFICITY;

HEXAPODA; LACERTIDAE; MAMMALIA; REPTILIA;

EID: 9844220852     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006237     Document Type: Article

References (36)

1. Arnold EN (1989) Towards a phylogeny and biogeography of Lacertidae: relationships within an Old-World family of lizards derived from morphology. Bull Br Mus Nat Hist (Zool) 55:209-257
2. Bannikova AA, Fedorova LV, Fedorov AN, Troitzky AV, Grechko VV, Dolgov VA, Lomov AA, Mednikov BM (1995) A comparison of repetitive DNA sequences of the family Erinaceidae (Mammalia) by restriction endonuclease analysis. Genetica (Russ) 31:1498-1506
3. Brown WM (1980) Polymorphism of mitochondrial DNA of humans as revealed by restriction endonuclease analysis. Proc Natl Acad Sci USA 77:3605-3609
4. Brown SDM, Dover GA (1979) Conservation of sequences in related genomes of Apodemus: constraints on the maintenance of satellite DNA sequences. Nucleic Acids Res 6:2423-2434
5. Brown SDM, Dover GA (1980) Conservation of segmental variants of satellite DNA of Mus musculus in related species: Mus spretus. Nature 285:47-79
6. Buckland RA (1983) Comparative structure and evolution of goat and sheep DNAs. Nucleic Acids Res 11:1349-1360
7. Chelomina GN, Lyapunova EA, Vorontsov NN, Suchia K (1995) Molecular genetic typing of three forms of wood and field mice belonging to transpalearctic genus (Apodemus; Muridae, Rodentia). Genetica (Russ) 31:820-824
8. Christie NT, Skinner DM (1979) Evidence for nonrandom alteration in the fraction of the highly repetitive DNA of eucaryote. Nucleic Acids Res 6:781-796
9. Cooke HJ (1975) Evolution of the long range structure of satellite DNA in the genus Apodemus. J Mol Biol 94:87-99
10. Dandieu S, Rahuel C, Ruffie J, Lucotte G (1984) Comparison of the highly repetitive DNA sequences of humans and different species of primates. Biochem Syst Ecol 12:237-244
11. Darevsky IS (1993) Evolution and ecology of parthenogenesis in reptiles. Current research on biology of amphibians and reptiles. Proceedings of the First World Congress of Herpetology, Society for Study of Amphibians and Reptiles, Oxford, OH pp 21-39
12. Donehower L, Gillespie D (1979) Restriction sites periodicities in highly repetitive DNA in Primates. J Mol Biol 134:805-834
13. Elizur A, Dennis ES, Peacock WJ (1982) Satellite DNA sequences in the red kangaroo (Macropus rufus). Austral J Biol Sci 35:313-325
14. Fedorov AN, Grechko VV, Slobodyanyuk SYa, Fedorova LV, Timokhina GI (1992) Taxonomic analysis of DNA repeated sequences. Mol Biol (Russ) 26:464-469
15. Felsenstein J (1993) PHYLIP version 3.5c. Distributed by author. Department of genetics, University of Washington, Seattle
16. Garoff H, Ansorge W (1981) Improvements of DNA sequencing gels. Anal Bioehem 115:450-457
17. Grachev MA, Slobodyanyuk SYa, Kholodilov NG, Fyodorov SP, Belicov SI, Sherbakov DYu, Sideleva VG, Zubin AA, Kharchenko VV (1992) Comparative study of two protein coding regions of mtDNA from three endemic Sculpins (Cottoidei) of Lake Baikal. J Mol Evol 34:85-90
18. Grechko VV, Ryabinin DM, Fedorova LV, Fedorov AN, Darevsky IS, Ryskov AP (1993) Taxoprint analysis of DNA from some species of the fam. Lacertidae. Mol Biol (Russ) 27:1404-1414
19. Hembelen V, Leweke B, Roth A, Stadler K (1982) Organization of highly repetitive satellite DNA of two Cucurbitaceae species (Cucumis melon and C. sativus). Nucleic Acids Res 10:631-644
20. Kirilchik SV, Slobodyanyuk SYa (1997) Evolution of the cytochrome b fragment of some Cottoidea species mitochondrial DNA of Lake Baikal and other localities. Mol Biol (Russ) 31:168-175
21. Lima de Faria A, Arnasson U, Widegren B, Essen - Miller J, Isacsson M, Olsson E, Jaworska M (1984) Conservation of repetitive DNA sequences in deer species studied by Southern blot transfer. J Mol Evol 20:17-24
22. Mednikov BM, Bannikova AA, Lomov AA, Melnikova MN, Shubina EA (1995) Restriction analysis of repetitive DNA sequences: species criteria and species origin. Mol Biol (Russ) 29:1308-1319
23. Melnikova MN, Grechko VV, Mednikov BM (1995) Investigation of genetic divergence and polymorphism of nuclear DNA in species and populations of domestic and wild sheep. Genetica (Russ) 31: 1120-1131
24. Moritz C, Uzzell T, Spolsky C, Hotz H, Darevsky I, Kupriyunova L, Danielyan F (1992) The maternal ancestry and approximate age of parthenogenetic species of Caucasian rock lizards (Lacerta: Lacertidae). Genetica 87:53-62
25. Murphy RW, Darevsky IS, MacCulloch RD, Fu J, Kupriyanova LA (1996) Evolution of the bisexual species of Caucasian rock lizards: a phylogenetic evaluation of allozyme data. Russ J Herp 3:18-31
26. Nei M, Li W-H (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269-5273
27. Potapov SG, Ryskov AP (1993) Analysis of variability of repetitive elements of DNA of some rodent genomes at the taxonomical level. Genetica (Russ) 29:869-872
28. Potapov SG, Vassilyev VA, Samarina OP, Ryskov AP (1994) Molecular genetic fingerprinting of Phodopus genus representatives. Genetica (Russ) 30:6150621
29. Rohlf FJ (1993) NTSYS - pc. Numerical taxonomy and multivariate analysis system. Department of Ecology and Evolution. State University of New York, Stony Brook
30. Ryskov AP, Kudryavtsev PI, Vassilyev SG, Sirko IP (1994) Diagnostic potentialities of molecular-genetic approaches in the taxonomy of the tribe Bovini. Genetica (Russ) 73:115-123
31. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
32. Shubina EA, Mednikov BM (1986) The repetitive families in DNA of Far East salmon (Onchorhinchus). Mol Biol (Russ) 20:947-956
33. Skurikhina LA, Oleynik AG, Nevshchupov SV, Brykov VA (1993) Phylogeny of Far East salmon by restriction endonuclease analysis data. Genetica (Russ) 29:1508-1518
34. Sneath PHA, Sokal RR (1973) Numerical taxonomy: the principles and practice of numerical classification. Freeman, San Francisco, p 573
35. Southern EM (1975) Long range periodicities in mouse satellite. J Mol Biol 94:51-69
36. Turner BJ, Edler JF, Laughlin TF (1991) Repetitive DNA sequences and divergence of fish populations: some hopeful beginnings. J Fish Biol 39:131-142