메뉴 건너뛰기




Volumn 249, Issue 1-2, 2004, Pages 55-66

Origin and phylogeny of Oryza species with the CD genome based on multiple-gene sequence data

Author keywords

Adh; CD genome; GPA1; matK; Origin; Oryza; Phylo geny; trnL trnF

Indexed keywords

ORYZA; ORYZA ALTA; ORYZA AUSTRALIENSIS; ORYZA EICHINGERI; ORYZA GRANDIGLUMIS; ORYZA LATIFOLIA; ORYZA OFFICINALIS; ORYZA RHIZOMATIS; PHYLO;

EID: 9744257047     PISSN: 03782697     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00606-004-0173-8     Document Type: Article
Times cited : (38)

References (44)
  • 1
    • 0004412264 scopus 로고    scopus 로고
    • Differentiation within CCDD genome species in the genus Oryza as revealed by total genomic hybridization and RFLP analysis
    • Aggarwal R. K., Brar D. S., Huang N., Khush G.S. (1996) Differentiation within CCDD genome species in the genus Oryza as revealed by total genomic hybridization and RFLP analysis. Rice Genet News. 13: 54-57.
    • (1996) Rice Genet News , vol.13 , pp. 54-57
    • Aggarwal, R.K.1    Brar, D.S.2    Huang, N.3    Khush, G.S.4
  • 3
    • 0034508742 scopus 로고    scopus 로고
    • Coevolution of A and B genomes in allotetraploid Triticum dicoccoides
    • Belyayev A., Raskina O., Korol A., Nevo E. (2000) Coevolution of A and B genomes in allotetraploid Triticum dicoccoides. Genome 43: 1021-1026.
    • (2000) Genome , vol.43 , pp. 1021-1026
    • Belyayev, A.1    Raskina, O.2    Korol, A.3    Nevo, E.4
  • 4
    • 0034879552 scopus 로고    scopus 로고
    • Analysis of random and specific sequences of nuclear and cytoplasmic DNA in diploid and tetraploid American wild rice species (Oryza spp.)
    • Buso G. S. C., Rangel P.H., Ferreira M. E. (2001) Analysis of random and specific sequences of nuclear and cytoplasmic DNA in diploid and tetraploid American wild rice species (Oryza spp.). Genome 44: 476-494.
    • (2001) Genome , vol.44 , pp. 476-494
    • Buso, G.S.C.1    Rangel, P.H.2    Ferreira, M.E.3
  • 5
    • 0002029728 scopus 로고
    • A modified key and enumeration of the species of Oryza L.
    • Chatterjee D. (1948) A modified key and enumeration of the species of Oryza L. Indian J. Aric. Sci. 18: 185-192.
    • (1948) Indian J. Aric. Sci. , vol.18 , pp. 185-192
    • Chatterjee, D.1
  • 6
    • 0000039417 scopus 로고
    • Nouvelle contribution a l'etude systematique des Oryza
    • Chevalier A. (1932) Nouvelle contribution a l'etude systematique des Oryza. Rev. Bot. Appl. Agric. Trop. 12: 1014-1032.
    • (1932) Rev. Bot. Appl. Agric. Trop. , vol.12 , pp. 1014-1032
    • Chevalier, A.1
  • 7
    • 0001282557 scopus 로고
    • Chloroplast DNA diversity in wild and cultivated species of rice (Genus Oryza, section Oryza). Cladistic-mutation and genetic-distance analysis
    • Dally A. M., Second G. (1990) Chloroplast DNA diversity in wild and cultivated species of rice (Genus Oryza, section Oryza). Cladistic-mutation and genetic-distance analysis. Theor. Appl. Genet. 80: 209-222.
    • (1990) Theor. Appl. Genet. , vol.80 , pp. 209-222
    • Dally, A.M.1    Second, G.2
  • 8
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle J. J., Doyle J. L. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
    • (1987) Phytochem. Bull. , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 9
    • 0033776232 scopus 로고    scopus 로고
    • Confirmation of shared and divergent genomes in the Glycine tabacina polyploid complex (Leguminosae) using histone H3-D sequences
    • Doyle J. J., Doyle J. L., Brown A. H. D., Pfeil B.E. (2000) Confirmation of shared and divergent genomes in the Glycine tabacina polyploid complex (Leguminosae) using histone H3-D sequences. Syst. Bot. 25: 437448.
    • (2000) Syst. Bot. , vol.25 , pp. 437448
    • Doyle, J.J.1    Doyle, J.L.2    Brown, A.H.D.3    Pfeil, B.E.4
  • 11
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 12
    • 0031460001 scopus 로고    scopus 로고
    • Identification of the rice D-genome chromosomes by genomic in situ hybridisation
    • Fukui K., Shishido R., Kinoshita T. (1997) Identification of the rice D-genome chromosomes by genomic in situ hybridisation. Theor. Appl. Genet. 95: 1239-1245.
    • (1997) Theor. Appl. Genet. , vol.95 , pp. 1239-1245
    • Fukui, K.1    Shishido, R.2    Kinoshita, T.3
  • 15
    • 0033452726 scopus 로고    scopus 로고
    • Phylogeny of rice genomes with emphasis on origins of allotetraploid species
    • Ge S., Sang T., Lu B.-R., Hong D. Y. (1999) Phylogeny of rice genomes with emphasis on origins of allotetraploid species. Proc. Natl. Acad. Sci. USA 96: 14400-14405.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 14400-14405
    • Ge, S.1    Sang, T.2    Lu, B.-R.3    Hong, D.Y.4
  • 16
    • 0035543150 scopus 로고    scopus 로고
    • Rapid and reliable identification of rice genomes by RFLP analysis of PCR- Amplification Adh genes
    • Ge S., Sang T., Lu B.-R., Hong D. Y. (2001a) Rapid and reliable identification of rice genomes by RFLP analysis of PCR- amplification Adh genes. Genome 44: 1136-1142.
    • (2001) Genome , vol.44 , pp. 1136-1142
    • Ge, S.1    Sang, T.2    Lu, B.-R.3    Hong, D.Y.4
  • 17
    • 0012544362 scopus 로고    scopus 로고
    • Phylogeny of the genus Oryza as revealed by molecular approaches
    • Khush G. S., Brar D.S., Hardy B. (eds.) Rice genetics IV. IRRI, Philippines
    • Ge S., Sang T., Lu B.-R., Hong D. Y. (2001b) Phylogeny of the genus Oryza as revealed by molecular approaches. In: Khush G. S., Brar D.S., Hardy B. (eds.) Rice genetics IV. Proceedings of the Fourth International Rice Genetics Symposium. IRRI, Philippines, pp. 89-105.
    • (2001) Proceedings of the Fourth International Rice Genetics Symposium , pp. 89-105
    • Ge, S.1    Sang, T.2    Lu, B.-R.3    Hong, D.Y.4
  • 18
    • 9744232580 scopus 로고
    • Taxonomic status and the origin of American tetraploid species of the series Latifoliae Tateka in the genus Oryza
    • Gopalakrishnan R., Sampath S. (1967) Taxonomic status and the origin of American tetraploid species of the series Latifoliae Tateka in the genus Oryza. India J. Agric. Sci. 37: 465-475.
    • (1967) India J. Agric. Sci. , vol.37 , pp. 465-475
    • Gopalakrishnan, R.1    Sampath, S.2
  • 19
    • 0026162341 scopus 로고
    • Restriction fragment length polymorphism analysis of CCDD genome species of the genus Oryza L.
    • Jena K. K., Kochert G. (1991) Restriction fragment length polymorphism analysis of CCDD genome species of the genus Oryza L. Plant Mol. Biol. 16: 831-839.
    • (1991) Plant Mol. Biol. , vol.16 , pp. 831-839
    • Jena, K.K.1    Kochert, G.2
  • 20
    • 0001088232 scopus 로고    scopus 로고
    • Assessing congruence: Empirical examples from molecular data
    • Soltis D. E., Soltis P. S., Doyle J. J. (eds.). Kluwer Academic Publishers, Boston
    • Johnson L. A., Soltis D. E. (1998) Assessing congruence: Empirical examples from molecular data. In: Soltis D. E., Soltis P. S., Doyle J. J. (eds.) Molecular systematics of plants. Kluwer Academic Publishers, Boston, pp. 297-348.
    • (1998) Molecular Systematics of Plants , pp. 297-348
    • Johnson, L.A.1    Soltis, D.E.2
  • 21
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences
    • Kimura M. (1980) A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 22
    • 0034887371 scopus 로고    scopus 로고
    • Differentiation and inter-genomic relationships among C, e and D genomes in the Oryza officinalis complex (Poaceae) as revealed by multicolor genomic in situ hybridization
    • Li C.-B., Zhang D.-M., Ge S., Lu B.-R., Hong D.-Y. (2001) Differentiation and inter-genomic relationships among C, E and D genomes in the Oryza officinalis complex (Poaceae) as revealed by multicolor genomic in situ hybridization. Theor. Appl. Genet. 103: 197-203.
    • (2001) Theor. Appl. Genet. , vol.103 , pp. 197-203
    • Li, C.-B.1    Zhang, D.-M.2    Ge, S.3    Lu, B.-R.4    Hong, D.-Y.5
  • 23
    • 0004198594 scopus 로고    scopus 로고
    • Taxonomy of the genus Oryza (Poaceae): Historical perspective and current status
    • Lu B.-R. (1999) Taxonomy of the genus Oryza (Poaceae): historical perspective and current status. Intern. Rice Res. Not. 24: 4-8.
    • (1999) Intern. Rice Res. Not. , vol.24 , pp. 4-8
    • Lu, B.-R.1
  • 24
    • 0028702491 scopus 로고
    • GTP-binding proteins in plants: New members of an old family
    • Ma H. (1994) GTP-binding proteins in plants: new members of an old family. Plant Mol. Biol. 26: 1611-1636.
    • (1994) Plant Mol. Biol. , vol.26 , pp. 1611-1636
    • Ma, H.1
  • 25
    • 0008180683 scopus 로고
    • Cytogenetics of rice (Oryza sativa L.)
    • Morinaga T. (1939) Cytogenetics of rice (Oryza sativa L.). Bot. Zool. 7: 179-183.
    • (1939) Bot. Zool. , vol.7 , pp. 179-183
    • Morinaga, T.1
  • 26
    • 0004206293 scopus 로고
    • 1 hybrids of O. minuta Presl. and O. lalifolia
    • 1 hybrids of O. minuta Presl. and O. lalifolia. Jpn. J. Bot. 12: 347-357.
    • (1943) Jpn. J. Bot. , vol.12 , pp. 347-357
    • Morinaga, T.1
  • 27
    • 0001231343 scopus 로고
    • Origin and cytogenetics of rice
    • Nayar N. M. (1973) Origin and cytogenetics of rice. Adv. Genet. 17: 153-292.
    • (1973) Adv. Genet. , vol.17 , pp. 153-292
    • Nayar, N.M.1
  • 28
    • 0034847822 scopus 로고    scopus 로고
    • Inferring the history of the polyploid Silene aegaea (Caryophyllaceae) using plastid and homoeologous nuclear DNA sequences
    • Popp M., Oxelman B. (2001) Inferring the history of the polyploid Silene aegaea (Caryophyllaceae) using plastid and homoeologous nuclear DNA sequences. Mol. Phylogenet. Evol. 20: 474-481.
    • (2001) Mol. Phylogenet. Evol. , vol.20 , pp. 474-481
    • Popp, M.1    Oxelman, B.2
  • 30
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstruction phylogenetic trees
    • Saitou N., Nei M. (1987) The neighbor-joining method: a new method for reconstruction phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 31
    • 0032840917 scopus 로고    scopus 로고
    • Reconstructing hybrid speciation using sequences of low copy nuclear genes: Hybrid origins of five Paeonia species based on Adh gene phytogenies
    • Sang T., Zhang D. (1999) Reconstructing hybrid speciation using sequences of low copy nuclear genes: Hybrid origins of five Paeonia species based on Adh gene phytogenies. Syst. Bot. 24: 148-163.
    • (1999) Syst. Bot. , vol.24 , pp. 148-163
    • Sang, T.1    Zhang, D.2
  • 32
    • 0036062110 scopus 로고    scopus 로고
    • Utility of low-copy nuclear gene sequences in plant phylogenetics
    • Sang T. (2002) Utility of low-copy nuclear gene sequences in plant phylogenetics. Crit. Rev. Biochem. Mol. Biol. 37: 121-147.
    • (2002) Crit. Rev. Biochem. Mol. Biol. , vol.37 , pp. 121-147
    • Sang, T.1
  • 33
    • 0032229478 scopus 로고    scopus 로고
    • The tortoise and the hare: Choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group
    • Small R. L., Ryburn J. A., Cronn R. C., Seelanan T., Wendel J. F. (1998) The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group. Amer J. Bot. 85: 1301-1315.
    • (1998) Amer. J. Bot. , vol.85 , pp. 1301-1315
    • Small, R.L.1    Ryburn, J.A.2    Cronn, R.C.3    Seelanan, T.4    Wendel, J.F.5
  • 34
    • 0002080561 scopus 로고    scopus 로고
    • Choosing an approach and an appropriate gene for phylogenetic analysis
    • Soltis D. E., Soltis P. S., Doyle J.J. (eds.). Kluwer Academic Publishers, Boston
    • Soltis D. E., Soltis P. S. (1998) Choosing an approach and an appropriate gene for phylogenetic analysis. In: Soltis D. E., Soltis P. S., Doyle J.J. (eds.) Molecular systematics of Plants. Kluwer Academic Publishers, Boston, pp. 1-42.
    • (1998) Molecular Systematics of Plants , pp. 1-42
    • Soltis, D.E.1    Soltis, P.S.2
  • 38
    • 0026261665 scopus 로고
    • Universal primers for amplification of three non-coding regions of chloroplast DNA
    • Taberlet P., Gielly L., Pautou G., Bouvet J. (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17: 1105-1109.
    • (1991) Plant Mol. Biol. , vol.17 , pp. 1105-1109
    • Taberlet, P.1    Gielly, L.2    Pautou, G.3    Bouvet, J.4
  • 39
    • 0001282698 scopus 로고
    • Taxonomic studies of Oryza I. O. latifolia complex
    • Tateoka T. (1962) Taxonomic studies of Oryza I. O. latifolia complex. Bot. Mag. Tokyo 75: 418-427.
    • (1962) Bot. Mag. Tokyo , vol.75 , pp. 418-427
    • Tateoka, T.1
  • 40
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson J. D., Higgins D. G., Gibson T. J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic. Acids Res. 22: 4673-4680.
    • (1994) Nucleic. Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 34249840289 scopus 로고
    • Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs
    • Wang Z. Y., Second G., Tanksley S. D. (1992) Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theor. Appl. Genet. 83: 565-581.
    • (1992) Theor. Appl. Genet. , vol.83 , pp. 565-581
    • Wang, Z.Y.1    Second, G.2    Tanksley, S.D.3
  • 44
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel J. F. (2000) Genome evolution in polyploids. Plant Mol. Biol. 42: 225-249.
    • (2000) Plant Mol. Biol. , vol.42 , pp. 225-249
    • Wendel, J.F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.