Extracting protein-protein interaction sentences by applying rough set data analysis

Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science)

Volumn 3066, Issue , 2004, Pages 780-785

  Ginter, Filip ^a   Pahikkala, Tapio ^a   Pyysalo, Sampo ^a   Boberg, Jorma ^a   Järvinen, Jouni ^a   Salakoski, Tapio ^a  

^a UNIVERSITY OF TURKU   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

ABSTRACTING; BIOMEDICAL ENGINEERING; DATA REDUCTION; DECISION MAKING; INFORMATION RETRIEVAL; KNOWLEDGE BASED SYSTEMS; MORPHOLOGY; ROUGH SET THEORY; TEXT PROCESSING; DATA HANDLING; INFORMATION ANALYSIS; PROTEINS;

BIOMEDICAL DOMAINS; BREAK-EVEN PERFORMANCE; HAND-TAGGED DATASETS; PROTEIN-PROTEIN INTERACTIONS; BIOMEDICAL LITERATURE; CROSS VALIDATION; DECISION RULES; LEAVE ONE OUT; MORPHOLOGICAL MODEL; PROTEIN NAMES; ROUGH SET DATA ANALYSIS;

PROTEINS; ROUGH SET THEORY;

EID: 9444280894     PISSN: 03029743     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1007/978-3-540-25929-9_99     Document Type: Conference Paper

References (8)

1. Bader, G., Donaldson, I., Wolting, C., Ouellette, B., Pawson, T., Hogue, C.: BIND - the biomolecular interaction network database. Nucleic Acids Research 29 (2001) 242-245
2. Xenarios, I., Rice, D., Salwinski, L., Baron, M., Marcotte, E., Eisenberg, D.: DIP: The database of interacting proteins. Nucleic Acids Research 28 (2000) 289-291
3. Temkin, J., Gilder, M: Extraction of protein interaction information from unstructured text using a context-free grammar. Bioinformatics 19 (2003) 2046-2053
4. Bunescu, R., Ge, R., Kate, R., Marcotte, E.M., Mooney, R., Ramani, A.K., Wong, Y.W.: Comparative experiments on learning information extractors for proteins and their interactions. Artificial Intelligence in Medicine. Special Issue on Summarization and Information Extraction from Medical Documents (2004) (to appear)
5. Pawlak, Z.: Rough sets, decision algorithms and Bayes' theorem. European Journal of Operational Research 136 (2002) 181-189
6. Lydall, D., Weiner, T.: G2/M checkpoint genes of saccharomyces cerevisiae: further evidence for roles in DNA replication and/or repair. Molecular and General Genetic 256 (1997) 638-651
7. Calderwood, D., Zent, R., Grant, R., Rees, D., Hynes, R., Ginsberg, M.: The talin head domain binds to integrin beta subunit cytoplasmic tails and regulates integral activation. The Journal of Biological Chemistry 274 (1999) 28071-28074
8. Koskenniemi, K.: Two-level model for morphological analysis. In Bundy, A., ed.: Proceedings of the Eighth International Joint Conference on Artificial Intelligence, 8-12 August 1983, Karlsruhe, West Germany, William Kaufmann, Inc. (1983) 683-685