The alignment of the medical subject headings to the gene ontology and its application in gene annotation

Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science)

Volumn 3066, Issue , 2004, Pages 798-804

  Tveit, Henrik ^a   Mollestad, Torulf ^a,b   Lsegreid, Astrid ^a  

^a NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Norway)

^b SAS Institute AS Norway   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

DATABASE SYSTEMS; ENZYMES; GENES; INDEXING (OF INFORMATION); INFORMATION ANALYSIS; MEDICINE; SET THEORY; THESAURI; MESH GENERATION; ROUGH SET THEORY;

ASSOCIATION ANALYSIS; ENZYME COMMISSION (EC); GENE ONTOLOGY (GO); MEDICAL SUBJECT HEADINGS (MESH); BIOMEDICAL CITATIONS; ENZYME COMMISSIONS; GENE ANNOTATION; ITS APPLICATIONS; LITERATURE DATABASE; MANUAL ANNOTATION; MEDICAL SUBJECT HEADINGS;

VOCABULARY CONTROL; GENES;

EID: 9444260421     PISSN: 03029743     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1007/978-3-540-25929-9_102     Document Type: Conference Paper

References (8)

1. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25: 25-29. 2000.
2. Lægreid A, Hvidsten TR, Midelfart H, Komorowski J, Sandvik AK. Predicting gene ontology biological process from temporal gene expression patterns. Genome Res. 13(5): 965-79. 2003.
3. Hvidsten TR, Lægreid A, Komorowski J. Learning rule-based models from gene expression time profiles annotated using Gene Ontology. Bioinformatics, 19:1116-23. 2003
4. Raychaudhuri S, Chang JT, Sutphin PD, Altman RB. Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature. Genome Res. 12: 203-214. 2002.
5. National Library of Medicine. Medical Subject Headings. http://www.nlm.nih.gov/mesh/meshhome.html
6. Nomenclature Committee of the International Union of Biochemistry and Molecular Biology. Enzyme Nomenclature. http://www.chem.qmul.ac.uk/iubmb/enzyme/
7. Agrawal R, Imielinski T, Swami A. Mining association rules between sets of items in large databases. In Proceedings of the ACM SIGMOD Conference on Management of Data, 207-216. 1993.
8. Funk ME, Reid CA. Indexing Consistency in MEDLINE. Bulletin of the Medical Library Association, 71(2):176-83. 1983.