Coupling DNA supercoiling to transcription in defined protein systems

Journal of Biological Chemistry

Volumn 279, Issue 46, 2004, Pages 47564-47571

  Leng, Fenfei ^a   Amado, Luciana ^a   McMacken, Roger ^b  

^a FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^b JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BIOCHEMISTRY; ENZYME KINETICS; GENETIC ENGINEERING; MACROMOLECULES; PROTEINS; RNA;

DNA TEMPLATES; RNA POLYMERASE; TRANSCRIPTION LENGTHS; TRANSCRIPTION-COUPLED DNA SUPERCOILING (TCDS);

DNA;

CURVED DNA; DNA TOPOISOMERASE (ATP HYDROLYSING); HU PROTEIN; PLASMID DNA; RIBONUCLEASE H; RNA POLYMERASE;

ARTICLE; DNA SUPERCOILING; DNA TEMPLATE; DNA TRANSCRIPTION; IN VITRO STUDY; IN VIVO STUDY; PRIORITY JOURNAL; RNA SYNTHESIS; RNA TRANSCRIPTION;

DNA GYRASE; DNA TOPOISOMERASES; DNA, SUPERHELICAL; DNA-BINDING PROTEINS; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; NUCLEIC ACID CONFORMATION; PLASMIDS; REPRESSOR PROTEINS; RIBONUCLEASE H, CALF THYMUS; RNA; TRANSCRIPTION, GENETIC; VIRAL PROTEINS;

BACTERIA (MICROORGANISMS);

EID: 9144219714     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M403798200     Document Type: Article

References (32)

1. Wang, J. C. (1996) Annu. Rev. Biochem. 65, 635-692
2. Lilley, D. M., Chen, D., and Bowater, R. P. (1996) Q. Rev. Biophys. 29, 203-225
3. Kornberg, A., and Baker, T. A. (1992) in DNA Replication, 2nd Ed., pp. 521-537, W. H. Freeman and Company, New York
4. Gellert, M., Mizuuchi, K., ODea, M. H., and Nash, H. A. (1976) Proc. Natl. Acad. Sci. U. S. A. 73, 3872-3876
5. Liu, L. F., and Wang, J. C. (1978) Cell 15, 979-984
6. Brown, P. O., and Cozzarelli, N. R. (1979) Science 206, 1081-1083
7. Pruss, G. J., and Drlica, K. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 8952-8956
8. Liu, L. F., and Wang, J. C. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 7024-7027
9. Richardson, S. M., Higgins, C. F., and Lilley, D. M. (1988) EMBO J. 7, 1863-1869
10. Droge, P. (1994) Bioessays 16, 91-99
11. Zechiedrich, E. L., Khodursky, A. B., Bachellier, S., Schneider, R., Chen, D., Lilley, D. M., and Cozzarelli, N. R. (2000) J. Biol. Chem. 275, 8103-8113
12. Tsao, Y. P., Wu, H. Y., and Liu, L. F. (1989) Cell 56, 111-118
13. Droge, P., and Nordheim, A. (1991) Nucleic Acids Res. 19, 2941-2946
14. Drolet, M., Bi, X., and Liu, L. F. (1994) J. Biol. Chem. 269, 2068-2074
15. Wang, Z., and Droge, P. (1997) J. Mol. Biol. 271, 499-510
16. Phoenix, P., Raymond, M. A., Masse, E., and Drolet, M. (1997) J. Biol. Chem. 272, 1473-1479
17. Masse, E., and Drolet, M. (1999) J. Mol. Biol. 294, 321-332
18. Leng, F., and McMacken, R. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 9139-9144
19. Mensa-Wilmot, K., Seaby, R., Alfano, C., Wold, M. S., Gomes, B., and McMacken, R. (1989) J. Biol. Chem. 264, 2853-2861
20. Yanisch-Perron, C., Vieira, J., and Messing, J. (1985) Gene (Amst.) 33, 103-119
21. Wold, M. S., Mallory, J. B., Roberts, J. D., LeBowitz, J. H., and McMacken, R. (1982) Proc. Natl. Acad. Sci. U. S. A. 79, 6176-6180
22. Norgard, M. V. (1981) Anal. Biochem. 113, 34-42
23. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual, 2nd Ed., p. 6.7, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
24. Jeng, S. T., Gardner, J. F., and Gumport, R. I. (1990) J. Biol. Chem. 265, 3823-3830
25. Macdonald, L. E., Zhou, Y., and McAllister, W. T. (1993) J. Mol. Biol. 232, 1030-1047
26. Rouviere-Yaniv, J., Yaniv, M., and Germond, J. E. (1979) Cell 17, 265-274
27. Champoux, J. J., and McConaughy, B. L. (1975) Biochemistry 14, 307-316
28. Richardson, J. P. (1975) J. Mol. Biol. 98, 565-579
29. Chen, D., and Lilley, D. M. (1999) J. Mol. Biol. 285, 443-448
30. Masse, E., Phoenix, P., and Drolet, M. (1997) J. Biol. Chem. 272, 12816-12823
31. Masse, E., and Drolet, M. (1999) J. Biol. Chem. 274, 16659-16664
32. Wang, Z., and Droge, P. (1996) EMBO J. 15, 581-589