cDNA cloning and functional analysis of the p97 subunit of the 265 proteasome, a polypeptide identical to the type-1 tumor-necrosis-factor-receptor-associated protein-2/55.11

European Journal of Biochemistry

Volumn 239, Issue 3, 1996, Pages 912-921

  Tsurumi, Chizuko ^a   Shimizu, Yoshihisa ^a   Saeki, Mihoro ^b   Kato, Seishi ^b   Demartino, George N ^c   Slaughter, Clive A ^d   Fujimuro, Masahiro ^e   Yokosawa, Hideyoshi ^e   Yamasaki, Moto O ^f   Hendil, Klavs B ^g   Toh E, Akio ^h   Tanahashi, Nobuyuki ^a   Tanaka, Keiji ^a  

^a UNIVERSITY OF TOKUSHIMA   (Japan)

^b SAGAMI CHEMICAL RESEARCH CENTER   (Japan)

^c UNIVERSITY OF TEXAS AT DALLAS   (United States)

^d HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^e HOKKAIDO UNIVERSITY   (Japan)

^f KYOWA HAKKO KOGYO CO LTD   (Japan)

^g UNIVERSITY OF COPENHAGEN   (Denmark)

^h UNIVERSITY OF TOKYO   (Japan)

Author keywords

p97 subunit; Proteasome; Type 1 tumor necrosis factor receptor; Ubiquitin

Indexed keywords

PROTEASOME; REGULATOR PROTEIN; TUMOR NECROSIS FACTOR BINDING PROTEIN;

AMINO ACID ANALYSIS; AMINO ACID SEQUENCE; ARTICLE; COMPUTER ANALYSIS; CONTROLLED STUDY; FUNGUS MUTANT; HUMAN; HUMAN TISSUE; ISOELECTRIC POINT; MOLECULAR CLONING; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; SIGNAL TRANSDUCTION; YEAST;

FUNGI;

EID: 8944258100     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1432-1033.1996.0912u.x     Document Type: Article

References (51)

1. Ahn, J. Y., Tanahashi, N., Akiyama, K., Hisamatsu, H., Noda, C., Tanaka, K., Chung, C. H., Shibmara, N., Willy, P. J., Mott, J. D., Slaughter, C. A. & DeMartino, G. N. (1995) Primary structures of two homologous subunits of PA28, a γ-inteferon-inducible protein activator of the 20S proteasome, FEBS Lett. 366, 37-42.
2. Akiyama, K., Yokota, K., Kagawa, S., Shimbara, N., Tamura, T., Akioka, A., Nothwang, H. G., Noda, C., Tanaka, K. & Ichihara, A. (1994) cDNA cloning and Interferon-γ down-regulation of proteasomal subunits X and Y. Science 265, 1231-1234.
3. Akiyama, K., Yokota, K., Kagawa, S., Shimbara, N., Slaughter, C. A., Moomaw, C. R., DeMartino, G. & Tanaka, K. (1995) cDNA cloning of a new ATPase subunit p45 of the human 26S proteasome. homolog of yeast transcriptional factor SUG1, FEBS Lett. 363, 151-156.
4. Boldin, M. P., Mett, I. L. & Wallach, D. (1995) A protein related to a proteasomal subunit binds to the intracellular domain of the p55 TNF receptor upstream to its 'death domain', FEBS Lett. 367, 39-44.
5. Chirgwin, J. M., Przybyla, A. E., MacDonald, R. J. & Ritter, W. J. (1979) Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease, Biochemistry 18, 5294-5299.
6. Ciechanover, A. (1994) The ubiquitin-proteasome proteolytic pathway, Cell 79, 13-21.
7. Confalonieri, F. & Duguet, M. (1995) A 200-amino acid ATPase module in search of a basic function, Bioessays 17, 639-650.
8. DeMarini, D. J., Papa, F. R., Swaminathan, S., Ursic, D., Rasmussen, T. P., Culbertson, M. R. & Hochstrasser, M. (1995) The yeast SEN3 encodes a regulatory subunit of the 26S proteasome complex required for ubiquitin-dependent protein degradation in vivo, Mol. Cell. Biol. 15, 6331-6321.
9. DeMartino, G. N., Moomaw, C. R., Zagnitko, O. P., Proske, R. J., Ma, C.-P., Afendis, S. J., Swaffield, J. C. & Slaughter, C. A. (1994) PA700. an ATP-dependent activator of the 20S proteasome. is an ATPase containing multiple members of a nucleotide-binding protein family, J. Biol. Chem. 269, 20 878-20 884.
10. DeMartino, G. M., Proske, R. J., Moomaw, C. R., Strong, A. A., Hisamatsu, H., Tanaka, K. & Slaughter, C. A. (1996) Identification, purification, and characterization of a PA700-depenednt activator of the proteasome, J. Biol. Chem. 271, 3112-3118.
11. Deveraux, Q., Ustrell, V., Pickart, C. & Rechsteiner, M. (1994) A 26S prolease subunit that binds ubiquitin conjugates, J. Biol. Chem. 269, 7059-7061.
12. Deveraux, Q., van Mocker, S., Mahaffey, D., Vierstra, R. & Rechsteiner, M. (1995) Inhibition of ubiquitin-mediated proteolysis by the Arabidopsis 26S protease subunit S5a. J. Biol. Chem. 270, 29 660-29 663.
13. Dubiel, W., Ferrell, K., Pratt, G. & Rechsteiner, M. (1992) Subunit 4 of the 26S protease is a member of a novel eukaryotic ATPase family, J. Biol. Chem. 267, 22 669-22 702.
14. Dubiel, W., Ferrell, K. & Rechsteiner, M. (1995) Subunits of the regulatory complex of the 26S protease, Mol. Biol. Rep. 21, 27-34.
15. Fujimuro, M., Sawada, H. & Yokosawa, H. (1994) Production and characterization of monoclonal antibodies specific to multi-ubiquitin chains of ployubiquitinated proteins, FEBS Lett. 349, 173-180.
16. Fujiwara, T., Tanaka, K., Orino, E., Yoshimura, T., Kumatori, A., Tamura, T., Chung, C. H., Nakai, T., Yamaguchi, K., Shin, S., Kakizuka, A., Nakanishi, S. & Ichihara, A. (1990) Proteasomes are essential for yeast proliferation: cDNA cloning and gene disruption of two major subunits, J. Biol. Chem. 265, 16 604-16 613.
17. Fujiwara, T. Watanabe, T., Tanaka, K., Slaughter, C. A. & DeMartino, G. N. (1996) cDNA cloning of p42, a shared subunit of two proteasome regulatory proteins, reveals a novel member of the AAA protein, family, FEBS Lett., in the press.
18. Goldberg, A. L. & Rock, K. L. (1992) Proteolysis, proteasomes and antigen presentation, Nature 357, 375-379.
19. Gordon, C., McGurk, G., Dillon, P., Rosen, C. & Hastie, N. D. (1993) Defective mitosis due to a mutation in the gene for a fission yeast 26S protease subunit, Nature 366, 3655-3657.
20. Grindley, T., Gray, D. A., Orr-Weaver, T., Soriano, P., Barton, D. E., Francke, U. & Jaenisch, R. (1990) Molecular analysis of Mov-34 mutation: transcript disrupted by proviral integration in mice is conserved in Drosophola, Development (Cambr.) 109, 235-242.
21. Haraeska, L. & Udvardy, A. (1995) Cloning and sequencing a non-ATPasc subunit of the regulatory complex of the Drosophila 26S protease, Eur J. Biochem. 231, 720-725.
22. Heemels, M. T. & Ploegh, H. (1995) Generation, translocation, and presentation of MHC class I-restricted peptides, Annu. Rev. Biochem. 64, 463-491.
23. Hershko, A. & Ciechanover, A. (1992) The ubiquitin system for protein degradation, Annu. Rev. Biochem. 61, 761-807.
24. Hochstrasser, M. (1995) Ubiquitin, proteasomes, and the regulation of intracellular protein degradation, Curr. Opin. Cell Biol. 7, 215-223.
25. Hsu, H., Xiong, J. & Goeddel, D. V. (1995) The TNF receptor1-associated protein TRADD signals cell death and NF-κB activation, Cell 81, 495-504.
26. Ito, H., Fukuda, Y., Murata, K. & Kimura, A. (1983) Transformation of intact yeast cells treated with alkali cations, J. Bacterial. 153, 163-168.
27. Kato, S., Sekine, S., Oh, S.-W., Kim, N.-S., Umezawa, Y. Abe, N., Yokoyama-Kobayashi, M. & Aoki, T. (1994) Construction of a human full-length cDNA bank, Gene (Amst.) 150, 243-250.
28. Kominami, K., DeMartino, G. N., Moomaw, C. R., Slaughter, C. A., Shimbara, N., Fujimuro, M., Yokosawa, H., Hisamatsu, H., Tanahashi, N., Shimizu, Y., Tanaka, K. & Toh-e, A. (1995) Nin1p, a regulatory subunit of the 26S proteasome, is necessary for activation of Cdc28p kinase of Saccharomyces cerevisiae, EMBO J. 14, 3105-3115.
29. Kozak, M. (1984) Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs, Nucleic Acid Res. 12, 857-872.
30. Ma, C. P., Vu, J. H., Proske, R. J., Slaughter, C. A. & DeMartino, G. N. (1994) Identification, purification, and chracterization of a high molecular mass, ATP-dependent activator (PA700) of the 20S proteasome. J. Biol. Chem. 269, 3539-3547.
31. Needleman, S. B. & Wusch, C. D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins, J. Mol. Biol. 48, 443-453.
32. Nelbock, P., Dillon, P. J., Perkins, A. & Rosen, C. A. (1990) cDNA for a protein that interacts with a human immunodeficiency virus Tat transactivator, Science 24, 1650 1653.
33. Palombella, V. J., Rando, O. J., Goldberg, A. L. & Maniatis, T. (1994) The ubiquitin-proteasome pathway is required for processing the NF-kappa B1 precursor protein and the activation of NF-kappa B, Cell 78, 773-785.
34. Peters, J.-M. (1994) Proteasomes: protein degradation machines of the cells, Trends Biochem. Sci. 19, 377-382.
35. Realini, C., Roberts, S. W. & Rechsteiner, M. (1994a) KEKE motifs Proposed roles in protein-proteon association and presentation of peptides hy MHC Class I receptors, FEBS Lett. 348, 109-113.
36. Realini, C., Dubiel, W., Pratt, G., Ferrell, K. & Rechsteiner, M. (1994b) Molecular cloning and expression of a γ-interferon-inducible activator of the multicatalytic protease, J. Biol. Chem. 269, 20 727-20 732.
37. Rechsteiner, M., Hoffman, L. & Dubiel, W. (1993) The multicatalytic and 26S proteases, J. Biol. Chem. 268, 6065-6068.
38. Rothstein, R. (1983) One step gene disruption in yeast, Methods Enzymol. 101, 202-211.
39. Rock, K. L., Gramm, C., Rothstein, L., Clark, K., Stein, R., Dick, L., Hwang, D. & Goldberg, A. L. (1994) Inhibitors of the proteasome block the degradation of most cell proteins and the generation of peptides presented on MHC class I molecules, Cell 78, 761-771.
40. Sherman, F. (1991) Getting started with yeast, Methods Enzymol. 194, 3-21.
41. Shibuya, H., Irie, K., Ninomiya-Tsuji, J., Goebl, M., Taniguchi, T. & Matsumoto, K. (1992) New human gene encoding a positive modulator of HIV Tat-mediated transactivation, Nature 357, 700-702.
42. Skoog, B. & Wichman, A. (1986) Calculation of the isoelectric points of polypeptides from the amino acid composition, Trends Anal. Chem. 5, 82-83.
43. Song, H. Y., Dunbar, J. D., Zhang, Y. X., Guo, D. & Donner, D. B. (1995) Identification of a protein with homology to hsp90 that hinds the type 1 tumor necrosis factor receptor, J. Biol. Chem. 270, 3574-3581.
44. Sutton, A., Immanuel, D. & Arndt, K. T. (1991) The SIT4 protein phosphatase functions in late G1 for progresion into S phase, Mol. Cell. Biol. II, 2133-2148.
45. Tanahashi, N., Tsurumi, C., Tamura, T. & Tanaka, K. (1993) Molecular structures of 20S and 26S proteasomes, Enzyme Protein 47, 241-251.
46. Tanaka, K. (1995) Molecular biology of proteasomes, Mol. Biol. Rep. 21, 21-26.
47. Tanaka, K., Fujiwara, T. Kumatori, A., Shin, S., Yoshimura, T., Ichihara, A., Tokunaga, F., Aruga, R., Iwanaga, S., Kakizuka, A. & Nakanishi, S. (1990) Molecular cloning of cDNA for proteasomes from rat liver: primary structure of component C3 with a possible tyrosine phosphorylation site, Biochemistry 29, 3777-3785.
48. Tsubuki, S., Saito, Y. & Kawashima, S. (1994) Purification and characterization of an endogenous inhibitor specific to the Z-Leu-Leu-Leu-MCA degradaing activity in proteasome and its identification as heat-shock protein 90, FEBS Lett. 344, 229-233.
49. Tsurumi, C., DeMartino, G. N., Slaughter, C. A., Shimbara, N. & Tanaka, K. (1995) cDNA cloning of a regulatory subunit of the human 26S proteasome, a homolog of Mov-34 gene product, Biochem. Biophys. Res. Commun. 210, 600-608.
50. van Nocker, S., Deveraux, Q., Rechsteiner, M. & Vierstra, R. (1996) Arabidopsis MBP1 gene encodes a conserved ubiquitin recognition component of the 26S proteasome, Proc. Natl Acad. Sci. USA 93, 856-860.
51. Yokota, K., Kagawa, S., Shimizu, Y., Akioka, H., Tsurumi, C., Noda, C., Fujimuro, M., Yokosawa, H., Fujiwara, T., Takahashi, E., Ohba, M., Yamasaki, M., DeMartino, G. N., Slaughter, C. A., Toh-e, A. & Tanaka, K. (1996) Molecular cloning of cDNA encoding a largest regulatory subunit p112 of the human 26S proteasome and functional analysis of its homolog Sen3p in budding yeast, Mol. Biol. Cell, 853-870.