-
1
-
-
0028854679
-
Genetic analysis of human immunodeficiency virus type 1 envelope V3 region isolates from mothers and infants after perinatal transmission
-
Ahmad, N., B. M. Baroudy, R. C. Baker, and C. Chappey. 1995. Genetic analysis of human immunodeficiency virus type 1 envelope V3 region isolates from mothers and infants after perinatal transmission. J. Virol. 69:1001-1012.
-
(1995)
J. Virol.
, vol.69
, pp. 1001-1012
-
-
Ahmad, N.1
Baroudy, B.M.2
Baker, R.C.3
Chappey, C.4
-
2
-
-
0028797197
-
V3 sequences in primary HIV-1 infection
-
Antonioli, I. M., C. Baumberger, S. Yerly, and L. Perrin. 1995. V3 sequences in primary HIV-1 infection. AIDS 9:11-17.
-
(1995)
AIDS
, vol.9
, pp. 11-17
-
-
Antonioli, I.M.1
Baumberger, C.2
Yerly, S.3
Perrin, L.4
-
3
-
-
0025244367
-
Concurrent evolution of human immunodeficiency virus type 1 in patients infected from the same source: Rate of sequence change and low frequency of inactivating mutations
-
Balfe, P., P. Simmonds, C. A. Ludlam, J. O. Bishop, and A. J. Leigh Brown. 1990. Concurrent evolution of human immunodeficiency virus type 1 in patients infected from the same source: rate of sequence change and low frequency of inactivating mutations. J. Virol. 64:6221-6233.
-
(1990)
J. Virol.
, vol.64
, pp. 6221-6233
-
-
Balfe, P.1
Simmonds, P.2
Ludlam, C.A.3
Bishop, J.O.4
Leigh Brown, A.J.5
-
4
-
-
0022992591
-
Oncogenes and human cancer: Cause or consequence?
-
Barbacid, M. 1986. Oncogenes and human cancer: cause or consequence? Carcinogenesis 7:1037-1042.
-
(1986)
Carcinogenesis
, vol.7
, pp. 1037-1042
-
-
Barbacid, M.1
-
5
-
-
3242742563
-
Reply to Korber et al.
-
Briant, L., J. Puel, C. M. Wade, A. J. Leigh Brown, and M. Guyader. 1995. Reply to Korber et al. Nature (London) 378:243-244.
-
(1995)
Nature (London)
, vol.378
, pp. 243-244
-
-
Briant, L.1
Puel, J.2
Wade, C.M.3
Leigh Brown, A.J.4
Guyader, M.5
-
6
-
-
0029066114
-
Analysis of envelope sequence variants suggests multiple mechanisms of mother-to-child transmission of human immunodeficiency virus type 1
-
Briant, L., C. M. Wade, J. Puel, A. J. Leigh Brown, and M. Guyader. 1995. Analysis of envelope sequence variants suggests multiple mechanisms of mother-to-child transmission of human immunodeficiency virus type 1. J. Virol. 69:3778-3788.
-
(1995)
J. Virol.
, vol.69
, pp. 3778-3788
-
-
Briant, L.1
Wade, C.M.2
Puel, J.3
Leigh Brown, A.J.4
Guyader, M.5
-
7
-
-
0027270147
-
The origin of HIV-1 isolate HTLV-IIIB
-
Chang, S. Y., B. H. Bowman, J. B. Weiss, R. E, Garcia, and T. J, White. 1993. The origin of HIV-1 isolate HTLV-IIIB. Nature (London) 363:466-469.
-
(1993)
Nature (London)
, vol.363
, pp. 466-469
-
-
Chang, S.Y.1
Bowman, B.H.2
Weiss, J.B.3
Garcia, R.E.4
White, T.J.5
-
8
-
-
0023653119
-
Origins of HTLV-4
-
Desrosiers, R. C., M. D. Daniel, N. L. Letvin, N. W. King, and R. D. Hunt. 1987. Origins of HTLV-4. Nature (London) 327:107.
-
(1987)
Nature (London)
, vol.327
, pp. 107
-
-
Desrosiers, R.C.1
Daniel, M.D.2
Letvin, N.L.3
King, N.W.4
Hunt, R.D.5
-
9
-
-
0024062264
-
Multiple aligned sequence editor (MASE)
-
Faulkner, D. V., and J. Jurka. 1988. Multiple aligned sequence editor (MASE). Trends Biochem. Sci. 13:321-322.
-
(1988)
Trends Biochem. Sci.
, vol.13
, pp. 321-322
-
-
Faulkner, D.V.1
Jurka, J.2
-
10
-
-
0024152983
-
Phylogenies from molecular sequences: Inference and reliability
-
Felsenstein, J. 1988. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22:521-565.
-
(1988)
Annu. Rev. Genet.
, vol.22
, pp. 521-565
-
-
Felsenstein, J.1
-
13
-
-
8944263183
-
-
IntelliGenetics, Inc., Camphell, Calif.
-
IntelliGenetics. 1991. Intelligenetics Suite, version 5.4. IntelliGenetics, Inc., Camphell, Calif.
-
(1991)
Intelligenetics Suite, Version 5.4
-
-
-
14
-
-
0028604415
-
Lack of transmission of human immunodeficiency virus in the practice of a dentist with AIDS
-
Jaffe, H. W., J. M. McCurdy, M. L. Kalish, T. Liberti, G. Metellus, B. H. Bowman, A. R. Neasman, and J. J. Witte. 1994. Lack of transmission of human immunodeficiency virus in the practice of a dentist with AIDS. Ann. Intern. Med. 121:855-859.
-
(1994)
Ann. Intern. Med.
, vol.121
, pp. 855-859
-
-
Jaffe, H.W.1
McCurdy, J.M.2
Kalish, M.L.3
Liberti, T.4
Metellus, G.5
Bowman, B.H.6
Neasman, A.R.7
Witte, J.J.8
-
15
-
-
0000732090
-
Evolution of protein molecules
-
H. N. Munro (ed.), Academic Press, New York
-
Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism. Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
16
-
-
0029090501
-
The evolving molecular epidemiology of HIV-1 envelope subtypes in injecting drug users in Bangkok, Thailand: Implications for HIV vaccine trials
-
Kalish, M. L., A. Baldwin, S. Raktham, C. Wasi, C.-C. Luo, G. Schochetman, T. D. Mastro, N. Young, S. Vanichseni, H. Rubsamen-Waigmann, H. von Briesen, J. I. Mullins, E. Delwart, B. Herring, J. Esparza, W. L. Heyward, and S. Osmanov. 1995. The evolving molecular epidemiology of HIV-1 envelope subtypes in injecting drug users in Bangkok, Thailand: implications for HIV vaccine trials. AIDS 9:850-856.
-
(1995)
AIDS
, vol.9
, pp. 850-856
-
-
Kalish, M.L.1
Baldwin, A.2
Raktham, S.3
Wasi, C.4
Luo, C.-C.5
Schochetman, G.6
Mastro, T.D.7
Young, N.8
Vanichseni, S.9
Rubsamen-Waigmann, H.10
Von Briesen, H.11
Mullins, J.I.12
Delwart, E.13
Herring, B.14
Esparza, J.15
Heyward, W.L.16
Osmanov, S.17
-
17
-
-
0019296687
-
A simple method for estimating evolutionary rates of hase substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rates of hase substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
18
-
-
0028842476
-
Protecting HIV sequence databases
-
Korber, B. T. M., G. Learn, J. I. Mullins, B. H. Hahn, and S. Wolinsky. 1995. Protecting HIV sequence databases. Nature (London) 378:242-243.
-
(1995)
Nature (London)
, vol.378
, pp. 242-243
-
-
Korber, B.T.M.1
Learn, G.2
Mullins, J.I.3
Hahn, B.H.4
Wolinsky, S.5
-
19
-
-
0023648812
-
Cloning of HTLV-4 and its relation to simian and human immunodeficiency viruses
-
Kornfeld, H., N. Riedel, G. A. Viglianti, V. Hirsch, and J. I. Mullins. 1987. Cloning of HTLV-4 and its relation to simian and human immunodeficiency viruses. Nature (London) 326:610-613.
-
(1987)
Nature (London)
, vol.326
, pp. 610-613
-
-
Kornfeld, H.1
Riedel, N.2
Viglianti, G.A.3
Hirsch, V.4
Mullins, J.I.5
-
20
-
-
0023214674
-
Dual infection of the central nervous system by AIDS viruses with distinct cellular tropisms
-
Koyanagi, Y., S. Miles, R. T. Mitsuyasu, J. E. Merrill, H. V. Vinters, and I. S. Y. Chen. 1987. Dual infection of the central nervous system by AIDS viruses with distinct cellular tropisms. Science 236:819-822.
-
(1987)
Science
, vol.236
, pp. 819-822
-
-
Koyanagi, Y.1
Miles, S.2
Mitsuyasu, R.T.3
Merrill, J.E.4
Vinters, H.V.5
Chen, I.S.Y.6
-
21
-
-
0002967835
-
Epidemiological significance of intraand inter-person variation of HIV-1
-
Kuiken, C. L., and B. Korber. 1994. Epidemiological significance of intraand inter-person variation of HIV-1. AIDS 8:s73-s83.
-
(1994)
AIDS
, vol.8
-
-
Kuiken, C.L.1
Korber, B.2
-
22
-
-
0003496662
-
-
Pennsylvania State University, University Park, Pa.
-
Kumar, S., K. Tamura, and M. Nei. 1993. MEGA: molecular evolutionary genetic analysis, version 1.02. Pennsylvania State University, University Park, Pa.
-
(1993)
MEGA: Molecular Evolutionary Genetic Analysis, Version 1.02
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
23
-
-
0024973417
-
Avoiding false positives with PCR
-
Erratum, 339:490
-
Kwok, S., and R. Higuchi. 1989. Avoiding false positives with PCR. Nature (London) 339:237-238. (Erratum, 339:490.)
-
(1989)
Nature (London)
, vol.339
, pp. 237-238
-
-
Kwok, S.1
Higuchi, R.2
-
24
-
-
0023740248
-
Rates and dates of divergence between AIDS virus nucleotide sequences
-
Li, W.-H., M. Tanimura, and P. M. Sharp. 1988. Rates and dates of divergence between AIDS virus nucleotide sequences. Mol. Biol. Evol. 5:313-330.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 313-330
-
-
Li, W.-H.1
Tanimura, M.2
Sharp, P.M.3
-
25
-
-
0025018259
-
Use of uracil DNA glycosylase to control carry-over contamination in polymerase chain reactions
-
Longo, M. C., M. S. Berninger, and J. L. Hartley. 1990. Use of uracil DNA glycosylase to control carry-over contamination in polymerase chain reactions. Gene 93:125-128.
-
(1990)
Gene
, vol.93
, pp. 125-128
-
-
Longo, M.C.1
Berninger, M.S.2
Hartley, J.L.3
-
26
-
-
0038072223
-
-
Sinauer and Associates, Sunderland, Mass.
-
Maddison, W. P., and D. R. Maddison. 1992. MacClade, version 3.01. Sinauer and Associates, Sunderland, Mass.
-
(1992)
MacClade, Version 3.01
-
-
Maddison, W.P.1
Maddison, D.R.2
-
28
-
-
0028935432
-
Similarity in env and gag genes between genomic RNAs of human immunodeficiency virus type 1 (HIV-1) from mother and infant is unrelated to time of HIV-1 RNA positivity in the child
-
Mulder-Kampinga, G. A., A, Simonon, C. L. Kulken, J. Dekker, H. J. Scherpbier, P. van de Perre, K. Boer, and J. Goudsmit. 1995. Similarity in env and gag genes between genomic RNAs of human immunodeficiency virus type 1 (HIV-1) from mother and infant is unrelated to time of HIV-1 RNA positivity in the child. J. Virol. 69:2285-2296.
-
(1995)
J. Virol.
, vol.69
, pp. 2285-2296
-
-
Mulder-Kampinga, G.A.1
Simonon, A.2
Kulken, C.L.3
Dekker, J.4
Scherpbier, H.J.5
Van De Perre, P.6
Boer, K.7
Goudsmit, J.8
-
29
-
-
0024658495
-
Variances of the average numbers of nucleotide substitutions within and between populations
-
Nei, M., and L. Jin. 1989. Variances of the average numbers of nucleotide substitutions within and between populations. Mol. Biol. Evol. 6:290-300.
-
(1989)
Mol. Biol. Evol.
, vol.6
, pp. 290-300
-
-
Nei, M.1
Jin, L.2
-
30
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W. R., and D. J. Lipman. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85:2444-2448.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
32
-
-
0028939919
-
Recombination in HIV-1
-
Robertson, D. L., P. M. Sharp, F. E. McCutchan, and B. H. Hahn. 1995. Recombination in HIV-1. Nature (London) 374:124-126.
-
(1995)
Nature (London)
, vol.374
, pp. 124-126
-
-
Robertson, D.L.1
Sharp, P.M.2
McCutchan, F.E.3
Hahn, B.H.4
-
33
-
-
0028100982
-
Identification of HIV-1 envelope genes recombinant between subtypes B and F in two epidemiologically linked individuals in Brazil
-
Sabino, E. C., E. G. Shpaer, M. G. Morgado, B. T. M. Korber, R. Diaz, V. Bongertz, S. Cavalcante, B. Galvao-Castro, J. I. Mullins, and A. Mayer. 1994. Identification of HIV-1 envelope genes recombinant between subtypes B and F in two epidemiologically linked individuals in Brazil. J. Virol. 68:6340-6346.
-
(1994)
J. Virol.
, vol.68
, pp. 6340-6346
-
-
Sabino, E.C.1
Shpaer, E.G.2
Morgado, M.G.3
Korber, B.T.M.4
Diaz, R.5
Bongertz, V.6
Cavalcante, S.7
Galvao-Castro, B.8
Mullins, J.I.9
Mayer, A.10
-
34
-
-
0023375195
-
The neighbour-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
35
-
-
0028793170
-
Identification of breakpoints in intergenotypic recombinants of HIV-1 by bootscanning
-
Salminen, M. O., J. K. Carr, D. S. Burke, and F. E. McCutchan. 1995. Identification of breakpoints in intergenotypic recombinants of HIV-1 by bootscanning. AIDS Res. Hum. Retroviruses 11:1423-1425.
-
(1995)
AIDS Res. Hum. Retroviruses
, vol.11
, pp. 1423-1425
-
-
Salminen, M.O.1
Carr, J.K.2
Burke, D.S.3
McCutchan, F.E.4
-
36
-
-
0026100921
-
A workbench for multiple alignment construction and analysis
-
Schuler, G. D., S. F. Altschul, and D. J. Lipman. 1991. A workbench for multiple alignment construction and analysis. Proteins 9:180-190.
-
(1991)
Proteins
, vol.9
, pp. 180-190
-
-
Schuler, G.D.1
Altschul, S.F.2
Lipman, D.J.3
-
37
-
-
8944255024
-
-
Personal communication
-
Shapshak, P. Personal communication.
-
-
-
Shapshak, P.1
-
38
-
-
0029007218
-
HIV-1 heterogeneity and cytokines: Neuropathogenesis
-
Shapshak, P., I. Nagano, K.-Q. Xin, W. Bradley, C. B. McCoy, N. C. J. Sun, M. Yoshioka, C. Petito, K. Goodkin, R. Douyon, A. K. Srivastava, and K. A. Crandall. 1995. HIV-1 heterogeneity and cytokines: neuropathogenesis. Adv. Exp. Med. Biol. 373:225-238.
-
(1995)
Adv. Exp. Med. Biol.
, vol.373
, pp. 225-238
-
-
Shapshak, P.1
Nagano, I.2
Xin, K.-Q.3
Bradley, W.4
McCoy, C.B.5
Sun, N.C.J.6
Yoshioka, M.7
Petito, C.8
Goodkin, K.9
Douyon, R.10
Srivastava, A.K.11
Crandall, K.A.12
-
39
-
-
0028884471
-
A computer program designed to rapidly screen for HIV-1 intersubtype recombinant sequences
-
Siepel, A. C., A. L. Halpern, C. Macken, and B. T. M. Korber. 1995. A computer program designed to rapidly screen for HIV-1 intersubtype recombinant sequences. AIDS Res. Hum. Retroviruses 11:1413-1416.
-
(1995)
AIDS Res. Hum. Retroviruses
, vol.11
, pp. 1413-1416
-
-
Siepel, A.C.1
Halpern, A.L.2
Macken, C.3
Korber, B.T.M.4
-
40
-
-
0028598812
-
The Genetic Data Environment: An expandable GUI for multiple sequence analysis
-
Smith, S. W., R. Overbeek, C. R. Woese, W. Gilbert, and P. M. Gillevet. 1994. The Genetic Data Environment: an expandable GUI for multiple sequence analysis. Comput. Appl. Biol. Sci. 10:671-675.
-
(1994)
Comput. Appl. Biol. Sci.
, vol.10
, pp. 671-675
-
-
Smith, S.W.1
Overbeek, R.2
Woese, C.R.3
Gilbert, W.4
Gillevet, P.M.5
-
41
-
-
0024282571
-
The phylogenetic history of immunodeficiency viruses
-
Smith, T. F., A. Srinivasan, G. Schochetman, M. Marcus, and G. Myers. 1988. The phylogenetic history of immunodeficiency viruses. Nature (London) 333:573-575.
-
(1988)
Nature (London)
, vol.333
, pp. 573-575
-
-
Smith, T.F.1
Srinivasan, A.2
Schochetman, G.3
Marcus, M.4
Myers, G.5
-
43
-
-
0001336205
-
Phylogenetic inference
-
D. M. Hillis, C. Moritz, and B. K. Mable (ed.), Sinauer Associates, Sunderland, Mass.
-
Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic inference, p. 407-514. In D. M. Hillis, C. Moritz, and B. K. Mable (ed.), Molecular systematics, 2nd ed. Sinauer Associates, Sunderland, Mass.
-
(1996)
Molecular Systematics, 2nd Ed.
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
44
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
45
-
-
0027259146
-
A novel method employing UNG to avoid carry-over contamination in RNA-PCR
-
Udaykumar, J. S. Epstein, and I. K. Hewlett. 1993. A novel method employing UNG to avoid carry-over contamination in RNA-PCR. Nucleic Acids Res. 21:3917-3918.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3917-3918
-
-
Udaykumar1
Epstein, J.S.2
Hewlett, I.K.3
-
46
-
-
0026518911
-
Human immunodeficiency virus type 1 quasispecies in vivo and ex vivo
-
Wain-Hobson, S. 1992. Human immunodeficiency virus type 1 quasispecies in vivo and ex vivo. Curr. Top. Microbiol. Immunol. 176:181-1993.
-
(1992)
Curr. Top. Microbiol. Immunol.
, vol.176
, pp. 181-1993
-
-
Wain-Hobson, S.1
-
47
-
-
0026551082
-
Selective transmission of human immunodeficiency virus type-1 variants from mother to infants
-
Wolinsky, S. M., C. M. Wike, B. T. M. Korber, C. Hutto, W. P. Parks, L. L. Rosenblum, K. J. Kunstman, M. R. Furtado, and J. L. Muñoz. 1992. Selective transmission of human immunodeficiency virus type-1 variants from mother to infants. Science 255:1134-1137.
-
(1992)
Science
, vol.255
, pp. 1134-1137
-
-
Wolinsky, S.M.1
Wike, C.M.2
Korber, B.T.M.3
Hutto, C.4
Parks, W.P.5
Rosenblum, L.L.6
Kunstman, K.J.7
Furtado, M.R.8
Muñoz, J.L.9
-
48
-
-
0028981317
-
Highly divergent env sequences of HIV-1 B subtype with two novel V3 loop motifs detected in an AIDS patient in Miami, Florida
-
Xin, K.-Q., P. Shapshak, S. Kawamoto, I. Nagano, C. B. McCoy, and K. Okuda. 1995. Highly divergent env sequences of HIV-1 B subtype with two novel V3 loop motifs detected in an AIDS patient in Miami, Florida. AIDS Res. Hum. Retroviruses 11:1139-1141.
-
(1995)
AIDS Res. Hum. Retroviruses
, vol.11
, pp. 1139-1141
-
-
Xin, K.-Q.1
Shapshak, P.2
Kawamoto, S.3
Nagano, I.4
McCoy, C.B.5
Okuda, K.6
-
49
-
-
8944224402
-
-
Unpublished data
-
Yoshimura, F. K., K. Diem, G. H. Learn, Jr., S. Riddell, and L. Corey. Unpublished data.
-
-
-
Yoshimura, F.K.1
Diem, K.2
Learn Jr., G.H.3
Riddell, S.4
Corey, L.5
-
50
-
-
0027229245
-
Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection
-
Zhang, L. Q., P. MacKenzie, A. Cleland, E. C. Holmes, A. J. Leigh Brown, and P. Simmonds. 1993. Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection. J. Virol. 67:3345-3356.
-
(1993)
J. Virol.
, vol.67
, pp. 3345-3356
-
-
Zhang, L.Q.1
MacKenzie, P.2
Cleland, A.3
Holmes, E.C.4
Leigh Brown, A.J.5
Simmonds, P.6
-
51
-
-
0027422278
-
Genotypic and phenotypic characterization of HIV-1 in patients with pri-mary infection
-
Zhu, T., H. Mo, N. Wang, D. S. Nam, Y. Cao, R. A. Koup, and D. D. Ho. 1993. Genotypic and phenotypic characterization of HIV-1 in patients with pri-mary infection. Science 261:1179-1181.
-
(1993)
Science
, vol.261
, pp. 1179-1181
-
-
Zhu, T.1
Mo, H.2
Wang, N.3
Nam, D.S.4
Cao, Y.5
Koup, R.A.6
Ho, D.D.7
-
52
-
-
0028815682
-
Evidence for coinfection by multiple strains of human immunodeficiency virus type 1 subtype B in an acute seroconvertor
-
Zhu, T., N. Wang, A. Carr, S. Wolinsky, and D. D. Ho. 1995 Evidence for coinfection by multiple strains of human immunodeficiency virus type 1 subtype B in an acute seroconvertor. J. Virol. 69:1324-1327.
-
(1995)
J. Virol.
, vol.69
, pp. 1324-1327
-
-
Zhu, T.1
Wang, N.2
Carr, A.3
Wolinsky, S.4
Ho, D.D.5
|