Exhaustive whole-genome tandem repeats search

Bioinformatics

Volumn 20, Issue 16, 2004, Pages 2702-2710

  Krishnan, Arun ^a   Tang, Francis ^a  

^a BIOINFORMATICS INSTITUTE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; BASE MISPAIRING; CONTROLLED STUDY; DNA POLYMORPHISM; GENE CLUSTER; GENE SEQUENCE; GENETIC ALGORITHM; GENOME ANALYSIS; GENOME SIZE; PARAMETRIC TEST; PRIORITY JOURNAL; REDUNDANCY ANALYSIS; SEQUENCE ANALYSIS; TANDEM REPEAT;

EID: 8844283350     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth311     Document Type: Article

References (14)

1. Benson,G. (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res., 27, 573-580.
2. Cohen,I., Liu,X., Schutz,C., White,B., Jenkins,E., Brown,W. and Holden,J. (2003) Association of autism severity with a monoamine oxidase A functional polymorphism. Clin. Genet., 64, 190-197.
3. Collins,J.R., Stephens,R.M., Gold,B., Long,B., Dean,M. and Burt,S.K. (2003) An exhaustive DNA micro-satellite map of the human genome using high performance computing. Genomics, 82, 10-19.
4. Fogu,G., Bertini,V., Dessole,S., Bandiera,P., Campus,P.M., Capobianco,G., Sanna,R., Soro,G. and Montella,A. (2003) Identification of a mutant allele of the androgen receptor gene in a family with androgen insensitivity syndrome: detection of carriers and prenatal diagnosis. Arch. Gyn. Obstet., 269, 25-29.
5. Groult,R., Léonard,M. and Mouchard,L. (2002) Evolutive tandem repeats using Hamming distance. In Proceedings of 27th Symposium on Mathematical Foundations of Computer Science, Warsaw, Poland, August 2002, Springer, pp. 292-304.
6. Groult,R., Léonard,M. and Mouchard,L. (2004) Speeding up detection of evolutive tandem repeats. Theor. Comp. Sci., 310 309-328.
7. Guerini,F.R., Ferrante,P., Losciale,L., Caputo,D., Lombardi,M.L., Pirozzi,G., Luongo,V., Sudomoina,M.A., Andreewski,T.V., Alekseenkov,A.D. et al. (2003) Myelin basic protein gene is associated with ms in DR4- and DR5-positive Italians and Russians. Neurology, 61, 520-526.
8. Kolpakov,R. and Kucherov,G. (2003) Finding approximate repetitions under Hamming distance. Theor. Com. Sci., 303, 135-156.
9. Kurtz,S., Choudhuri,J.V., Ohlebusch,E., Schleiermacher,C., Stoye,J. and Giegerich,R. (2001) REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Res., 29, 4633-4642.
10. Landau,G.M., Schmidt,J.P. and Sokol,D. (2001) An algorithm for approximate tandem repeats. J. Comp. Biol., 8, 1-18.
11. Licastro,F., Grimaldi,L.M., Bonafe,M., Martina,C., Olivieri,F., Cavallone,L., Giovanietti,S., Masliah,E. and Franceschi,C. (2003) Interleukin-6 gene alleles affect the risk of Alzheimer's disease and levels of the cytokine in blood and brain. Neurobiol. Aging, 24, 921-926.
12. Qian,Q., Wang,Y, Li,J., Yang,L., Wang,B. and Zhou,R. (2003) Association studies of dopamine D4 receptor gene and dopamine transporter gene polymorphisms in Han Chinese patients with attention deficit hyperactivity disorder. J. Peking Univ. Hea. Sci., 35, 412-418.
13. Sagot,M. and Myers,E.W. (1998) Identifying satellites in nucleic acid sequences. In Second Annual International Conference on Research in Computational Molecular Biology (RECOMB). ACM Press, New York, pp. 234-242.
14. Stolovitzky,G., Gao,Y., Floratos,A. and Rigoutsos,I. (2001) Tandem repeat detection using pattern discovery, with applications to identification of yeast satellites. Technical Report RC 21508. IBM T. J. Watson Research Center, Cambridge.