Incorporating Lindenmayer systems for architectural development in a functional-structural tree model

Ecological Modelling

Volumn 181, Issue 4, 2005, Pages 479-491

  Perttunen, Jari ^a   Sievänen, Risto ^a  

^a FINNISH FOREST RESEARCH INSTITUTE   (Finland)

Author keywords

Functional structural tree models; Lindenmayer systems; Tree architecture

Indexed keywords

BRANCHING POINTS; STRUCTURAL UNITS; TREE MODEL; TREE SEGMENTS;

ARCHITECTURAL DESIGN; COMPUTER SIMULATION; FEEDBACK; FUNCTIONS; STRUCTURAL ANALYSIS;

FORESTRY;

ECOLOGICAL MODELING; PLANT ARCHITECTURE; TREE;

BUDS; FEEDBACK; FUNCTIONAL GROUPS; STRUCTURAL ANALYSIS; TREES;

ARCTOSTAPHYLOS; ARCTOSTAPHYLOS UVA-URSI; PINUS SYLVESTRIS;

EID: 8844253125     PISSN: 03043800     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolmodel.2004.06.034     Document Type: Article

References (49)

1. Abelson H., and di Sesa A.A. Turtle Geometry 1982 MIT Press Cambridge
2. Balandier P., Lacointe A., LeRoux X., Sinoquet H., Cruiziat P., and LeDizes S. SIMWAL: a structural-functional model simulating single walnut tree growth in response to climate and pruning Ann. For. Sci. 57 2000 571 585
3. Coates K.D., Canham C.D., Beaudet M., Sachs D.L., and Messier C. Use of spatially explicit individual-tree model (SORTIE/BC) to explore the implications of patchiness in structurally complex forests For. Ecol. Manage. 2003 186
4. de Chantal M., Leinonen K., Kuuluvainen T., and Cescatti A. Early response of Pinus sylvestris and Picea abies seedlings to an experimental canopy gap in a boreal spruce forest For. Ecol. Manage. 176 2003 321 336
5. de Reffye P., Fourcaud T., Blaise F., Barthélémy D., and Houllier F. A functional model of tree growth and tree architecture Silva Fennica 31 3 1997 297 311
6. Deleuze C., and Houllier F. A transport model for tree ring width Silva Fennica 31 1997 239 250
7. Deussen O., Hanrahan P., Lintermann B., Mêch R., Pharr M., and Prusinkiewicz P. Realistic modeling and rendering of plant ecosystems Cunningham S. Bransford W. Cohen M.F. Proceedings of the 25th Annual Conference on Computer Graphics and Interactive Techniques 1998 ACM Press New York 275 286
8. Dzierzon H., Perttunen J., Kurth W., Sievänen R., and Sloboda B. Enhanced possibilities for analyzing tree structure as provided by an interface between different modelling systems Silva Fennica 37 1 2003 31 44
9. Eschenbach C. The effect of light acclimation of single leaves on whole tree growth and competition - an application of the tree growth model ALMIS Ann. For. Sci. 57 5/6 2000 599 609
10. Ferraro, P., Godin, C., Prusinkiewicz, P., 2002. L-systems and MTGs: integrating simulation and formal analysis of architectural plant models. In: Krzysztof, A., Meuth, H. (Eds.), Proceedings of 16th European Simulation Multiconference. Modelling and Simulation 2002. SCS Europe, Erlangen, Germany, ESM 2002, 3-5 June 2002, Darmstadt, Germany, 2002, pp. 418-422.
11. Godin C., Costes E., and Sinoquet H. A method for describing plant architecture which integrates topology and geometry Ann. Bot. 84 3 1999 343 357
12. Hari P., Kellomäki S., Mäkelä A., Ilonen P., Kanninen M., Korpilahti E., and Nygren M. Dynamics of early development of tree stand Acta Forestalia Fennica 1982 177
13. Honda H. Description of the form of trees by the parameters of the tree-like body: effects of the branching angle and branching length on the shape of the tree-like body J. Theor. Biol. 31 1971 331 338
14. Jaeger M., and de Reffye Ph. Basic concepts of computer simulation of plant growth J. Biosci. 17 1992 275 291
15. Karwowski R. Improving the Process of Plant Modeling: The L + C Modeling Language 2002 University of Calgary
16. Karwowski, R., Prusinkiewicz, P., 2003. Design and implementation of the L + C modelling language. Electron. Notes Theoret. Comput. Sci. 86 (2) 19 pp.
17. Kellomäki S., Ikonen V.-P., Peltola H., and Kolström T. Modelling the structural growth of Scots pine with implications for wood quality Ecol. Model. 122 1999 117 134
18. Kellomäki S., and Strandman H. A model for structural growth of young scots pine crowns based on light interception by shoots Ecol. Model. 80 1995 237 250
19. Kurth W. Growth grammar interpreter GROGRA 2.4: a software tool for the 3-dimensional interpretation of stochastic, sensitive growth grammars in the context of plant modeling Introduction and Reference Manual 1994 Forschungszentrum Waldökosysteme der Universitet Göttingen Göttingen
20. Kurth W. Morphological models of plant growth: possibilities and ecological relevance Ecol. Model. 75/76 1994 299 308
21. Kurth W. Die Simulation der Baumarchitektur mit Wachstumsgrammatiken 1999 Wissenschaftlicher Verlag Berlin 327
22. Landsberg J.J. Physiological Ecology of Forest Production 1986 Academic Press London
23. Lane B., and Prusinkiewicz P. Generating spatial distributions for multilevel models of plant communities Proceedings of Graphics Interface, Calgary, Alta., May 27-29 2002 69 80
24. Lindenmayer A. Mathematical models for cellular interaction in development, parts I and II J. Theor. Biol. 18 1968 280 315
25. Lindenmayer A. Developmental systems without cellular interaction their languages and grammar J. Theor. Biol. 30 1971 455 484
26. Lo E., Zhang M.W., Lechowicz M., Messier C., Nikinmaa E., and Perttunen J. Adaptation of the LIGNUM model for simulations of growth and light response in Jack pine For. Ecol. Manage. 150 3 2001 279 291
27. Mäkelä A. Carbon balance model of growth and self-pruning in trees based on structural relationships For. Sci. 43 1 1997 7 24
28. Mäkelä A., and Hari P. Stand growth model based on carbon uptake and allocation in individual trees Ecol. Model. 33 1986 315 331
29. Mäkelä A., and Mäkinen H. Generating 3D sawlogs with a process-based growth model For. Ecol. Manage. 184 2003 337 354
30. Měch R. Modeling and Simulation of the Interactions of Plants with Their Environment Using L-systems and Their Extension 1997 University of Calgary
31. Měch, R., Prusinkiewicz, P., 1996. Visual models of plants interacting their environment. In: Proceedings of SIGGRAPH '96, New Orleans, LA, 4-9 August 1996. ACM SIGGRAPH, New York, pp. 397-410.
32. Nikinmaa, E., 1992. Analysis of the growth of Scots pine; matching structure with function. No. 235 in Acta Forestalia Fenica. The society of Forestry in Finland - the finnish Forest Research Institute, 68 pp.
33. Palovaara, L., 2003. Reaktio-kuljetusyhtälö puumaisessa rakenteessa. Reaction-transport eduation in tree-like structure. Master's thesis, Teknillimen korkeakoulu. Helsinki University of Technology, Espoo.
34. Perttunen J., Nikinmaa E., Lechowicz M.J., Sievänen R., and Messier C. Application of the functional-structural tree model LIGNUM to sugar maple saplings (Acer saccharum Marsh) growing in forest gaps Ann. Bot. 88 3 2001 471 481
35. Perttunen J., Sievänen R., and Nikinmaa E. LIGNUM: a model combining the structure and the functioning of trees Ecol. Model. 108 1-3 1998 189 198
36. Perttunen J., Sievänen R., Nikinmaa E., Salminen H., Saarenmaa H., and Väkevä J. LIGNUM: a tree model based on simple structural units Ann. Bot. 77 1 1996 87 98
37. Prusinkiewicz P. Graphical applications of L-systems Proceedings of Graphics Interface '86 - Vison Interface '86 1986 247 253
38. Prusinkiewicz P. A look at the visual modeling of plants using L-systems Agronomie 19 1999 211 224
39. Prusinkiewicz P., and Hanan J. Lindenmayer systems fractals and plants No. 79 in Lecture Notes in Biomathematics 1989 Springer-Verlag Berlin
40. Prusinkiewicz P., and Hanan J. Visualization of botanical structures and processes using parametric L-systems Thalmann D. Scientific Visualization and Graphics Simulation 1990 J. Wiley & Sons 183 201
41. Prusinkiewicz P., and Hanan J. Lindenmayer systems: Impacts on theoretical computer science, computer graphics and developmental biology Rozenberg G. Salomaa A. L-systems: From Formalism to Programming Languages 1992 Springer-Verlag 193 211
42. Prusinkiewicz, P., Karwowski, R., Perttunen, J., Sievänen, R., 1999. Specification of L-a plant modeling language based on L-systems, version 0.5. Department of Computer Science, University of Calgary, Internal report.
43. Prusinkiewicz P., and Lindenmayer A. The Algorithmic Beauty of Plants 1990 Springer-Verlag New York
44. Regev A., and Shapiro E. Cells as computation Nature 419 2002 343
45. Remphrey W.R., Neal B.R., and Steeves T.A. The morphology and growth of Arctosaphylos uva-ursi (bearberry): an architectural model simulating colonizing plant Can. J. Bot. 1 1983 2451 2458
46. Salemaa M., and Sievänen R. The effect of apical dominance on the branching architecture of Arctostaphylos uva-ursi in four contrasting environments Flora 197 1189 2002 1 14
47. Sievänen R. A process-based model for the dimensional growth of even-aged stands Scand. J. For. Res. 8 1 1993 28 48
48. Stroustrup B. The C++ Programming Language 3rd ed. 1997 Addison-Wesley Reading, MA
49. Yan H.-P., Kang M.Z., de Reffye P., and Dingkuhn M. A dynamic, architectural plant model simulating resource-dependent growth Ann. Bot. 93 2004 591 602