A catalytic hydropyrolysis method for the rapid screening of microbial cultures for lipid biomarkers

Organic Geochemistry

Volumn 36, Issue 1, 2005, Pages 63-82

  Love, Gordon D ^a,b   Bowden, Stephen A ^b   Jahnke, Linda L ^c   Snape, Colin E ^d   Campbell, Christine N ^e   Day, John G ^e   Summons, Roger E ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

^c NASA AMES RESEARCH CENTER   (United States)

^d UNIVERSITY OF NOTTINGHAM   (United Kingdom)

^e Scottish Assoc Mar Sci Oban A   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYTIC HYDROPYROLYSIS; FOSSIL BIOMARKERS; MICROBIAL CULTURES;

CATALYST ACTIVITY; CELL CULTURE; CHEMICAL BONDS; HIGH PRESSURE EFFECTS; HYDROCARBONS; HYDROGENATION; LIPIDS; MICROORGANISMS; MOLECULAR STRUCTURE; PYROLYSIS;

BIOMARKERS;

BIOMARKER; DETECTION METHOD; HYDROCARBON; LIPID; MICROBIAL ACTIVITY; ORGANIC GEOCHEMISTRY; PYROLYSIS;

EID: 8844251570     PISSN: 01466380     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.orggeochem.2004.07.010     Document Type: Article

References (82)

1. B. Allard, J. Templier, and C. Largeau An improved method for the isolation of artefact-free algaenans from microalgae Organic Geochemistry 28 1998 543 548
2. 80+) in the trilaminar outer cell walls of some freshwater microalgae. A reappraisal of algaenan structure Organic Geochemistry 33 2002 789 801
3. S.M. Barrett, J.K. Volkman, G.A. Dunstan, and J.-M. Le Roi Sterols of 14 species of marine diatoms (Bacillariophyta) Journal of Phycology 31 1995 360 369
4. F. Behar, S. Derenne, and C. Largeau Closed pyrolyses of the isoprenoid algaenan of Botryococcus braunii, L race: Geochemical implications for derived kerogens Geochimica et Cosmochimica Acta 59 1995 2983 2997
5. M.V. Bell, and D. Pond Lipid composition during growth of motile and coccolith forms of Emiliania huxleyi Phytochemistry 41 1996 465 471
6. C. Berkaloff, E. Casadevall, C. Largeau, P. Metzger, S. Peracca, and J. Viret The resistant walls of the hydrocarbon-rich alga Botryococcus braunii Phytochemistry 22 1983 389 397
7. O. Berthéas, P. Metzger, and C. Largeau A high molecular weight complex lipid, aliphatic polyaldehyde tetraterpenediol polyacetal from Botryococcus braunii (L race) Phytochemistry 50 1999 85 96
8. A.N. Bishop, G.D. Love, A.D. McAulay, C.E. Snape, and P. Farrimond Release of kerogen-bound hopanoids by hydropyrolysis Organic Geochemistry 29 1998 989 1001
9. E.G. Bligh, and W.J. Dyer A rapid method of total lipid extraction and purification Canadian Journal of Biochemistry and Physiology 37 1959 911 917
10. P. Blokker, S. Schouten, H. van den Ende, J.W. de Leeuw, P.G. Hatcher, and J.S. Sinninghe Damsté Chemical structure of algaenans from the freshwater algae Tetraedron minimum, Scenedesmus communis and Pediastrum boryanum Organic Geochemistry 29 1998 1453 1468
11. P. Blokker, S. Schouten, J.W. de Leeuw, J.S. Sinninghe Damsté, and H. van den Ende A comparative study of fossil and extant algaenans using ruthenium tetroxide degradation Geochimica et Cosmochimica Acta 64 2000 2055 2065
12. J.J. Boon, W.I.C. Rijpstra, F. de Lange, J.W. de Leeuw, M. Yoshiaka, and Y. Shimizu Black Sea sterol - a molecular fossil for dinoflagellate blooms Nature 277 1979 125 127
13. S.C. Brassell, G. Eglinton, I.T. Marlowe, U. Pflaumann, and M. Sarnthein Molecular stratigraphy: a new tool for climate assessment Nature (London) 320 1986 129 133
14. S.D. Brown, O. Sirkecioglu, C.E. Snape, and T.I. Eglinton Speciation of the organic sulphur forms in a recent sediment and Type I and Type II-S kerogens by high pressure temperature programmed reduction Energy and Fuels 11 1997 532 538
15. M.H. Conte, J.K. Volkman, and G. Eglinton Lipid biomarkers of the Haptophyta J.C Green B.S.C. Leadbeater The Haptophyte Algae 1994 Clarendon Press Oxford 351 377
16. M.H. Conte, A. Thompson, G. Eglinton, and J.C. Green Lipid biomarker diversity in the coccolithophorid Emiliania huxleyi (Prymnesiophyceae) and the related species Gephyrocapsa oceanica Journal of Phycology 31 1995 272 282
17. O.E. Craig, G.D. Love, S. Isaaksson, G. Taylor, and C.E. Snape Stable carbon isotopic characterisation of free and bound lipid constituents of archaeological ceramic vessels released by solvent extraction, alkaline hydrolysis and catalytic hydropyrolysis Journal of Analytical and Applied Pyrolysis 71 2004 613 634
18. S. Derenne, C. Largeau, E. Casadevall, E. Tegelaar, and J.W. de Leeuw Relationship between algal coals and resistant cell wall biopolymers of extant algae as revealed by Py-GC-MS Fuel Processing Technology 20 1988 93 101
19. S. Derenne, C. Largeau, E. Casadevall, and C. Berkaloff Occurrence of a resistant biopolymer in the L race of Botryococcus braunii Phytochemistry 28 1989 1137 1142
20. S. Derenne, C. Largeau, E. Casadevall, C. Berkaloff, and B. Rousseau Chemical evidence of kerogen formation in source rocks and oil shales via selective preservation of thin resistant outer walls of microalgae: origin of ultralaminae Geochimica et Cosmochimica Acta 55 1991 1041 1050
21. S. Derenne, C. Largeau, C. Berkaloff, B. Rousseau, C. Wilhelm, and P.G. Hatcher Non-hydrolysable macromolecular constituents from outer walls of Chlorella fusca and Nanochlorum eucaryotum Phytochemistry 31 1992 1923 1929
22. P. Farrimond, G.D. Love, A.N. Bishop, H.E. Innes, D.F. Watson, and C.E. Snape Evidence for the rapid incorporation of hopanoids into kerogen Geochimica et Cosmochimica Acta 67 2003 1383 1394
23. C.M. Gatenby, D.M. Orcutt, D.A. Kreeger, B.C. Parker, V.A. Jones, and R.J. Neves Biochemical composition of three algal species proposed as food for captive freshwater mussels Journal of Applied Phycology 15 2003 1 11
24. F. Gelin, J.-P.L.A. Gatellier, J.S. Sinninghe Damsté, P. Metzger, S. Derenne, C. Largeau, and J.W. de Leeuw Mechanisms of flash pyrolysis of ether lipids isolated from the green microalga Botryococcus braunii race A Journal of Analytical and Applied Pyrolysis 27 1993 155 168
25. F. Gelin, J.W. de Leeuw, J.S. Sinninghe Damsté, S. Derenne, and C. Largeau The similarity of chemical structures of soluble aliphatic polyaldehyde and insoluble algaenan in the green microalga Botryococcus braunii race A as revealed by analytical pyrolysis Organic Geochemistry 21 1994 423 435
26. F. Gelin, I. Boogers, A.A.M Noordeloos, J.S. Sinninghe Damsté, P.G. Hatcher, and J.W. de Leeuw Novel, resistant microalgal polyethers: an important sink of organic carbon in the marine environment Geochimica et Cosmochimica Acta 60 1996 1275 1280
27. F. Gelin, J.K. Volkman, C. Largeau, S. Derenne, J.S. Sinninghe Damsté, and J.W. de Leeuw Distribution of aliphatic, nonhydrolyzable biopolymers in marine microalgae Organic Geochemistry 30 1999 147 159
28. E. Gelpi, H. Schneider, J. Mann, and J. Oró Hydrocarbons of geochemical significance in microscopic algae Phytochemistry 9 1970 603 612
29. K. Goth, J.W. de Leeuw, W. Püttman, and E.W. Tegelaar Origin of messel oil shale kerogen Nature (London) 336 1988 759 761
30. W.-Y. Huang, and W.G. Meinschein Sterols as ecological indicators Geochimica et Cosmochimica Acta 43 1979 739 745
31. K. Ismail, S.C. Mitchell, S.D. Brown, C.E. Snape, A.C. Buchanan III, P.F. Britt, D.V. Franco, I.I. Maes, and J. Yperman Silica-immobilised sulfur-compounds as solid calibrants for temperature-programmed reduction and probes for the thermal behaviour of organic sulphur forms in fossil fuels Energy and Fuels 9 1995 707 716
32. G.J. Jones, P.D. Nichols, and P.M. Shaw Analysis of microbial sterols and hopanoids M. Goodfellow A.G. O'Donnell Chemical Methods in Prokaryotic Systematics 1994 John Wiley and Sons Chichester 163 195
33. V. Lanzotti, B. Nicolaus, A. Trincone, and W.D. Grant The glycolipid of Halobacterium saccharovorum FEMS Microbiology Letters 55 1988 223 228
34. C. Largeau, S. Derenne, E. Casadevall, A. Kadouri, and N. Sellier Pyrolysis of immature Torbanite and of the resistant biopolymer (PRB A) isolated from extant alga Botryococcus braunii. Mechanism of formation and structure of Torbanite Organic Geochemistry 10 1986 1023 1032
35. J.W. de Leeuw, H.C. Cox, G. van Graas, F.W. van der Meer, T.M. Peakman, J.M.A. Baas, and B. van der Graaf Limited double bond isomerisation and selective hydrogenation of sterenes during early diagenesis Geochimica et Cosmochimica Acta 53 1989 903 909
36. G.D. Love, C.E. Snape, A.D. Carr, and R.C. Houghton Release of covalently-bound alkane biomarkers in high yields from kerogen via catalytic hydropyrolysis Organic Geochemistry 23 1995 981 986
37. G.D. Love, C.E. Snape, A.D. Carr, and R.C. Houghton Changes in molecular biomarker and bulk carbon skeletal parameters of vitrinite concentrates as a function of rank Energy and Fuels 10 1996 149 157
38. G.D. Love, A. McAulay, C.E. Snape, and A.N. Bishop Effect of process variables in catalytic hydropyrolysis on the release of covalently-bound aliphatic hydrocarbons from sedimentary organic matter Energy and Fuels 11 1997 522 531
39. G.D. Love, C.E. Snape, and A.E. Fallick Differences in the mode of incorporation and biogenicity of the principal aliphatic constituents of a Type I oil shale Organic Geochemistry 28 1998 797 811
40. A.S. Mackenzie, S.C. Brassell, G. Eglinton, and J.R. Maxwell Chemical fossils: the geological fate of steroids Science 217 1982 491 504
41. A.S. Mackenzie Applications of biological markers in petroleum geochemistry J. Brooks D. Welte Advances in Petroleum Geochemistry vol. 1 1984 Academic Press New York 115 214
42. 39) alkenones in the Prymnesiophyceae. Distribution of alkenones and other lipids and their taxonomic significance British Phycology Journal 19 1984 203 216
43. McGinn, A., 2002. Representative Bulk Structural and Molecular Information on Petroleum Source Rocks from Hydropyrolysis. Ph.D. Thesis, University of Strathclyde, UK
44. 13C contents of bacterial lipids Organic Geochemistry 28 1998 527 533
45. M.T.J. van der Meer, S. Schouten, J.W. de Leeuw, and D.M. Ward Autotrophy of green non-sulphur bacteria in hot spring microbial mats: biological explanations for isotopically heavy organic carbon in the geological record Environmental Microbiology 2 2000 428 435
46. E.I. Mercer, R.A. London, I.S.A. Kent, and A.J. Taylor Sterols, sterol esters and fatty acids of Botrydium granulatum, Tribonema aequale and Monodus subterraneus Phytochemistry 13 1974 845 852
47. W. Meredith, C.A. Russell, M. Cooper, C.E. Snape, G.D. Love, D. Fabbri, and C.H. Vane Trapping hydropyrolysates on silica and their subsequent thermal desorption to facilitate rapid fingerprinting by GC-MS Organic Geochemistry 35 2004 73 89
48. P. Metzger, E. Casadevall, and A. Couté Alkadiene- and botryococcene-producing races of wild strains of Botryococcus braunii Phytochemistry 24 1985 2305 2312
49. S.C. Mitchell, C.J. Lafferty, R. Garcia, C.E. Snape, A.C. Buchanan III, P.F. Britt, and E. Klavetter Silica-immobilised compounds as models for probing coal pyrolysis and hydropyrolysis Energy and Fuels 7 1993 331 333
50. I.P. Murray, G.D. Love, C.E. Snape, and N.J.L Bailey Comparison of covalently-bound aliphatic biomarkers released via hydropyrolysis with their solvent-extractable counterparts for a suite of Kimmeridge clays Organic Geochemistry 29 1998 1487 1505
51. V. Navale A study of chemical transformation of glycerol ether lipids to hydrocarbons by flash and hydrous pyrolysis Journal of Analytical and Applied Pyrolysis 23 1992 121 133
52. V. Navale Comparative study of low and high temperature hydrous pyrolysis products of monoglycerol diether lipid from archaebacteria Journal of Analytical and Applied Pyrolysis 29 1994 33 34
53. T.M. Peakman, and J.R. Maxwell Early diagenetic pathways of steroid alkenes Organic Geochemistry 13 1988 583 592
54. T.K. Pease Simulated degradation of glyceryl ethers by hydrous and flash pyrolysis Organic Geochemistry 29 1998 979 988
55. R.P. Philp, and M. Calvin Possible origin for insoluble organic (kerogen) debris in sediments from insoluble cell-wall materials of algae and bacteria Nature 262 1976 134 136
56. D.W. Pond, and R.P. Harris The lipid composition of the coccolithophore Emiliania huxleyi and its possible ecophysiological significance Journal of the Marine Biological Association of the United Kingdom 76 1996 579 594
57. F.G. Prahl, and S.G. Wakeham Calibration of unsaturation patterns in long-chain ketone compositions for palaeotemperature assessment Nature (London) 330 1987 367 369
58. E.L. Pugh, and M. Kates Acylation of proteins of the archaeabacteria Halobacterium cutirubrum and Methanobacterium thermoautotrophicum Biochimica et Biophysica Acta-Biomembranes 1196 1994 38 44
59. G. Rieley, M.A. Teece, T.M. Peakman, A.M. Raven, K.J. Greene, T.P. Clarke, M. Murray, J.W. Leftley, C.N. Campbell, R.P. Harris, R.J. Parkes, and J.R. Maxwell Long-chain alkenes of the haptophytes Isochrysis galbana and Emiliania huxleyi Lipids 33 1998 617 625
60. I. Rizov, and A. Doulis Separation of plant membrane lipids by multiple solid-phase extraction Journal of Chromatography A 922 2001 347 352
61. J.D. Rocha, S.D. Brown, G.D. Love, and C.E. Snape Hydropyrolysis: a versatile technique for solid fuel liquefaction, sulphur speciation and biomarker release Journal of Analytical and Applied Pyrolysis 40-41 1997 91 103
62. M. Rohmer, P. Bouvier-Nave, and G. Ourisson Distribution of hopanoid triterpenes in prokaryotes Journal of General Microbiology 130 1984 1137 1150
63. M.A. de Rosa, A. Gambacorta, B. Nicholaus, B. Chappe, and P. Albrecht The Caldariella group of extreme thermoacidophile bacteria: direct comparison of lipids in Sulfolobus, Thermoplasma, and the MT series Phytochemistry 15 1976 143 145
64. M.A. de Rosa, A. Gambacorta, B. Nicholaus, B. Chappe, and P. Albrecht Isoprenoid ethers: backbone of complex lipids of the archaebacterium Sulfolobus solfataricus Biochimica et Biophysica Acta 753 1983 249 256
65. S.J. Rowland Production of acyclic isoprenoid hydrocarbons by laboratory maturation of methanogenic bacteria Organic Geochemistry 15 1990 9 16
66. S. Schouten, M.J.L. Hoefs, M.P. Koopmans, H.-J. Bosch, and J.S. Sinninghe Damsté Structural characterisation, occurrence and fate of archaeal ether-bound acyclic and cyclic biphytanes and corresponding diols in sediments Organic Geochemistry 29 1998 1305 1319
67. S. Schouten, P. Moerkerken, F. Gelin, M. Baas, J.W. de Leeuw, and J.S. Sinninghe Damsté Structural characterisation of aliphatic, non-hydrolyzable biopolymers in freshwater algae and a leaf cuticle using ruthenium tetroxide oxidation Phytochemistry 49 1998 983 987
68. S. Schouten, W.C. Klein Breteler, P. Blokker, N. Schogt, I.C. Rijpstra, K. Grice, M. Baas, and J.S. Sinninghe Damsté Biosynthetic effects on the stable carbon isotopic composition of algal lipids: implications for deciphering the carbon isotopic record Geochimica et Cosmochimica Acta 62 1998 1397 1406
69. J. Shiea, S.C. Brassell, and D.M. Ward Comparative analysis of extractable lipids in hot spring microbial mats and their component photosynthetic bacteria Organic Geochemistry 17 1991 309 319
70. P. Simonin, U.J. Jurgens, and M. Rohmer Bacterial triterpenoids of the hopane series from the Prochlorophyte Prochlorothrix hollandica and their intracellular localization European Journal of Biochemistry 241 1996 851 865
71. J.H. Skerratt, P.D. Nichols, J.P. Bowman, and L.I. Sly Occurrence and significance of long-chain (ω-1)-hydroxy fatty acids in methane-utilizing bacteria Organic Geochemistry 18 1992 189 194
72. R.E. Summons, L.L. Jahnke, J.M. Hope, and G.A. Logan 2-Methylhopanoids as biomarkers for cyanobacterial oxygenic photosynthesis Nature 400 1999 554 557
73. R.E. Summons, T. Embaye, L.L. Jahnke, and M. Maumgartner Molecular signatures of methanogens in cultures and environmental samples Eos Transactions of the AGU 83 47 2002 B15 B073
74. Z. Tadesse, M. Boberg, L. Sonesten, and G. Ahlgren Effects of algal diets and temperature on the growth and fatty acid content of the cichlid fish Oreochromis nilocticus L. - a laboratory study Aquatic Ecology 37 2003 169 182
75. B.J. Tindall A comparative study of the lipid composition of Halobacterium saccharovorum from various sources Systematic and Applied Microbiology 13 1990 128 130
76. J.K. Volkman A review of sterol markers for marine and terrigenous organic matter Organic Geochemistry 9 1986 83 100
77. J.K. Volkman Sterols in microorganisms Applied Microbiology and Biotechnology 60 2003 495 506
78. J.K. Volkman, G. Eglinton, E.D.S. Corner, and T.E.V. Forsberg Long chain alkenes and alkenones in the marine coccolithophorid Emiliania huxleyi Phytochemistry 19 1980 2619 2622
79. J.K. Volkman, D.J. Smith, G. Eglinton, T.E.V. Forsberg, and E.D.S. Corner Sterol and fatty acid composition of four marine Haptophycean algae Journal of the Marine Biological Association of the UK 61 1981 509 527
80. J.K. Volkman, T. Burger-Wiersma, P.D. Nichols, and R.E. Summons Lipids and chemotaxonomy of Prochlorothrix hollandica, a planktonic prokaryote containing chlorophylls a and b Journal of Physicology 24 1988 554 559
81. J.K. Volkman, S.W. Jeffrey, G.I. Rogers, P.D. Nichols, and C.D. Garland Fatty acid and lipid composition of 10 species of microalgae used in mariculture Journal of Experimental Marine Biology and Ecology 128 1989 219 240
82. J.K. Volkman, S.M. Barrett, S.I Blackburn, M.P. Mansour, E.L. Sikes, and F. Gelin Microalgal biomarkers: a review of recent research developments Organic Geochemistry 29 1998 1163 1179