Identification of a novel protein D3UPCA from Halobacterium salinarum and prediction of its function

Proteomics

Volumn 4, Issue 11, 2004, Pages 3622-3631

  Lee, Moon Sup ^a   Joo, Won A ^a   Kim, Chan Wha ^a  

^a Korea University   (South Korea)

Author keywords

Electrospray ionization quadrupole time of flight mass spectrometry; Halobacterium salinarum; Matrix assisted laser desorption ionization time of flight; Prediction of function; Two dimensional gel electrophoresis

Indexed keywords

BACTERIAL PROTEIN; DIESEL FUEL; GLUTATHIONE TRANSFERASE; HYDROCARBON; PROTEIN D3UPCA; UNCLASSIFIED DRUG;

ARTICLE; BACTERIUM CULTURE; BIODEGRADATION; BIOINFORMATICS; CELL FUSION; ELECTROSPRAY MASS SPECTROMETRY; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; HALOBACTERIUM SALINARUM; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; RNA TRANSLATION; TWO DIMENSIONAL GEL ELECTROPHORESIS; UPREGULATION;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; ELECTROPHORESIS, AGAR GEL; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GASOLINE; HALOBACTERIUM SALINARUM; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; TRANSCRIPTION FACTORS;

ARCHAEA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; HALOBACTERIUM SALINARUM;

EID: 8744273834     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200400978     Document Type: Article

References (24)

1. Grant, W. D., Gemmell, R. T., McGenity, T. J., Halophiles, in: Horikoshi, K., Grant, W. D. (Eds), Extremophiles: Microbial Life in Extreme Environments, Wiley-Liss, New York, 1998, pp. 93-132.
2. DasSarma, S., Arora, P., in: Horikoshi, K., Grant, W. D., Halophiles, Encyclopedia of Life Sciences, Macmillan Press, Hampshire, UK 2001, pp. 1-9.
3. Ng, W. V., Hood, L., DasSarma, S., Proc. Natl, Acad. Sci. USA 2000, 97, 12176-12181.
4. Oren, A., Gurevich, P., Azachi, M., Hents, Y., Biodegradation 1992, 3, 387-398.
5. Margesin, R., Schinner, F. et al., Extremophiles 2001, 5, 73-83.
6. Ward, D. M., Brock, T. D., Appl. Environ. Microbiol. 1978, 35, 353-359.
7. Mille, G., Almallah, M., Bianchi, M., Wambeke, F. van, Bertrand, J. C., Fresenius J. Anal. Chem. 1991, 339, 788-791.
8. Kuznetsov, V. D., Zaitseva, T. A., Vakulenko, L. V., Filippova, S. N., Microbiology 1992, 61, 62-67.
9. Kulichevskaya, I. S., Milekhina, E. I., Borzenkov, I. A., Zvyagintseva, I. S., Belyaev, S. S., Microbiology 1992, 60, 596-601.
10. Bradford, M. M., Anal. Biochem. 1976, 72, 248-254.
11. Cho, C. W., Lee, S. H., Choi, J., Park, S. J. et al., Proteomics 2003, 3, 2325-2329.
12. Blum, H., Beier, H., Gross, H. J., Electrophoresis 1987, 8, 93-99.
13. Shevchenko, A., Wilm, M., Vorm, O., Mann, M., Anal. Chem. 1996, 68, pp. 850-858.
14. Ochman, H., Gerber, A. S., Hartl, D. L., Genetics 1998, 120, 621-623.
15. Guan, K., Dixon, J. E., Anal. Biochem. 1991, 192, 262-267.
16. Sambrook, J., Russell, D. W., in: Sambrook, J., Fritsch, B. F., Maniatis T. (Eds.), Molecular Cloning, Cold Spring Harbor Laboratory Press, NY, USA 2001, pp. 23-25.
17. Gussow, D., Clackson, T., Nucleic Acids Res. 1989, 17, 4000-4004.
18. Laemmli, U. K., Nature 1970, 227, 680-685.
19. Sperandio, V., Torres, A. G., Kaper, J. B., Mol Microbiol. 2002, 43, 809-821.
20. Monstadt, G. M., Holldorf, A. W., Biochem J. 1991, 273, 739-745.
21. Fritsche, W., Hofrichter, M., in: Jördening, H. J., Winter, J. (Eds.), Aerobic Degradation by Microorganisms, Wiley, Jena, Germany 1995, pp. 146-155.
22. Yonezawa, Y., Tokunaga, H., Ishibashi, M., Tokunaga, M., Biosci. Biotechnol. Biochem. 2001, 65, 2343-2346.
23. Wilson, K. P., Otsuka, A. J., Brennan, R. G., Shewchuk, L. M., Matthews, B. W., Proc. Natl. Acad. Sci. USA 1992, 89, 9257-9261.
24. Harrison, C. J., Hardy, J. A., Littlefield, O., Hubl, S. T. et al., Nucleic Acids Res. 2001, 29, 1715-1723.