The role of Ca2+-coordinating residues of herring antifreeze protein in antifreeze activity

Biochemistry

Volumn 43, Issue 46, 2004, Pages 14547-14554

  Li, Zhengjun ^a,b   Lin, Qingsong ^a,b   Yang, Daniel S C ^c   Ewart, K Vanya ^d   Hew, Choy L ^a,b  

^a HOSPITAL FOR SICK CHILDREN   (Canada)

^b NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^c MCMASTER UNIVERSITY   (Canada)

^d NATIONAL RESEARCH COUNCIL CANADA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIFREEZE SOLUTIONS; CALCIUM; CRYSTAL GROWTH; DATA REDUCTION; HYSTERESIS; ICE; MUTAGENESIS;

ANTIFREEZE ACTIVITY; ATLANTIC HERRING; HOMOLOGY; PROTECTION ASSAYS;

PROTEINS;

ANTIFREEZE PROTEIN; CALCIUM ION; ICE; LECTIN; MUTANT PROTEIN; ALANINE; AMIDE; AMINO ACID; CALCIUM; CALCIUM BINDING PROTEIN; CALCIUM CHLORIDE; GLUTAMYL ENDOPEPTIDASE; SERINE PROTEINASE;

ARTICLE; ATLANTIC HERRING; CALCIUM BINDING; CONTROLLED STUDY; CRYSTALLIZATION; EQUILIBRIUM DIALYSIS; FREEZING; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY; SITE DIRECTED MUTAGENESIS; STRUCTURAL HOMOLOGY; ANIMAL; CHEMISTRY; DEUTERIUM HYDROGEN EXCHANGE; GENETICS; HYDROLYSIS; METABOLISM; PROTEIN CONFORMATION; SPECTROFLUOROMETRY;

CLUPEA; CLUPEA HARENGUS;

ALANINE; AMIDES; AMINO ACIDS; ANIMALS; ANTIFREEZE PROTEINS, TYPE II; CALCIUM; CALCIUM CHLORIDE; CALCIUM RADIOISOTOPES; CALCIUM-BINDING PROTEINS; CRYSTALLIZATION; DEUTERIUM EXCHANGE MEASUREMENT; HYDROLYSIS; ICE; MUTAGENESIS, SITE-DIRECTED; PROTEIN CONFORMATION; SERINE ENDOPEPTIDASES; SPECTROMETRY, FLUORESCENCE;

EID: 8744240300     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi048485h     Document Type: Article

References (39)

1. Fletcher, G. L., Hew, C. L., and Davies, P. L. (2001) Antifreeze proteins of teleost fishes, Annu. Rev. Physiol. 63, 359-390.
2. Davies, P. L., and Sykes, B. D. (1997) Antifreeze proteins, Curr. Opin. Struct. Biol. 7, 828-834.
3. Knight, C. A., Cheng, C. C., and DeVries, A. L. (1991) Adsorption of alpha-helical antifreeze peptides on specific ice crystal surface planes, Biophys. J. 59, 409-418.
4. Wierzbicki, A., Taylor, M. S., Knight, C. A., Madura, J. D., Harrington, J. P., and Sikes, C. S. (1996) Analysis of shorthorn sculpin antifreeze protein stereospecific binding to (2-10) faces of ice, Biophys. J. 71, 8-18.
5. Knight, C. A., Driggers, E., and DeVries, A. L. (1993) Adsorption to ice of fish antifreeze glycopeptides 7 and 8, Biophys. J. 64, 252-259.
6. Slaughter, D., Fletcher, G. L., Ananthanarayanan, V. S., and Hew, C. L. (1981) Antifreeze proteins from the sea raven, Hemitripterus americanus. Further evidence for diversity among fish polypeptide antifreezes, J. Biol. Chem. 256, 2022-2026.
7. Ewart, K. V., and Fletcher, G. (1990) Isolation and characterization of antifreeze proteins from smelt (Osmerus mordax) and atlantic herring (Clupea harengus harengus), Can. J. Zool. 68, 1652-1658.
8. Ewart, K. V., and Fletcher, G. L. (1993) Herring antifreeze protein: primary structure and evidence for a C-type lectin evolutionary origin, Mol. Mar. Biol. Biotechnol. 2, 20-27.
9. Ewart, K. V., Rubinsky, B., and Fletcher, G. L. (1992) Structural and functional similarity between fish antifreeze proteins and calcium-dependent lectins, Biochem. Biophys. Res. Commun. 185, 335-340.
10. Drickamer, K. (1999) C-type lectin-like domains, Curr. Opin. Struct. Biol. 9, 585-590.
11. 2+-dependent antifreeze proteins. Modulation of conformation and activity by divalent metal ions, J. Biol. Chem. 271, 16627-16632.
12. Loewen, M. C., Gronwald, W., Sönnichsen, F. D., Sykes, B. D., and Davies, P. L. (1998) The ice-binding site of sea raven antifreeze protein is distinct from the carbohydrate-binding site of the homologous C-type lectin, Biochemistry 37, 17745-17753.
13. Drickamer, K. (1992) Engineering galactose-binding activity into a C-type mannose-binding protein, Nature 360, 183-186.
14. Ewart, K. V., Li, Z., Yang, D. S., Fletcher, G. L., and Hew, C. L. (1998) The ice-binding site of Atlantic herring antifreeze protein corresponds to the carbohydrate-binding site of C-type lectins, Biochemistry 37, 4080-4085.
15. Weis, W. I., Drickamer, K., and Hendrickson, W. A. (1992) Structure of a C-type mannose-binding protein complexed with an oligosaccharide, Nature 360, 127-134.
16. Graves, B. J., Crowther, R. L., Chandran, C., Rumberger, J. M., Li, S., Huang, K. S., Presky, D. H., Familletti, P. C., Wolitzky, B. A., and Burns, D. K. (1994) Insight into E-selectin/ligand interaction from the crystal structure and mutagenesis of the lec/EGF domains, Nature 367, 532-538.
17. Aiyar, A., and Leis, J. (1993) Modification of the megaprimer method of PCR mutagenesis: improved amplification of the final product, BioTechniques 14, 366-368.
18. Li, Z., Xiong, F., Lin, Q., d'Anjou, M., Daugulis, A. J., Yang, D. S. C., and Hew, C. L. (2001) Low-temperature increases the yield of biologically active herring antifreeze protein in Pichia pastoris, Protein Expression Purif. 21, 438-445.
19. Mach, H., Middaugh, C. R., and Lewis, R. V. (1992) Statistical determination of the average values of the extinction coefficients of tryptophan and tyrosine in native proteins, Anal. Biochem. 200, 74-80.
20. 45Ca autoradiography on nitrocellulose membrane after sodium dodecyl sulfate gel electrophoresis, J. Biochem. 95, 511-519.
21. Chakrabartty, A., Yang, D. S., and Hew, C. L. (1989) Structure-function relationship in a winter flounder antifreeze polypeptide. II. Alteration of the component growth rates of ice by synthetic antifreeze polypeptides, J. Biol. Chem. 264, 11313-11316.
22. Hillig, W. B., and Turnbull, D. (1956) Theory of crystal growth in an undercooled pure liquid, J. Chem. Phys. 24, 912.
23. Chao, H., DeLuca, C. I., and Davies, P. L. (1995) Mixing antifreeze protein types changes ice crystal morphology without affecting antifreeze activity, FEBS Lett. 357, 183-186.
24. Hvidt, A. (1996) Hydrogen exchange in proteins, Adv. Protein Chem. 21, 287-385.
25. Eftink, M. R. (1990) Fluorescence techniques for studying protein structure, Methods Biochem. Anal. 35, 117-129.
26. 2+ binding in a C-type mannose-binding protein, Biochemistry 37, 17977-17989.
27. Loewen, M. C., Chao, H., Houston, M. E., Jr., Baardsnes, J., Hodges, R. S., Kay, C. M., Sykes, B. D., Sönnichsen, F. D., and Davies, P. L. (1999) Alternative roles for putative ice-binding residues in type I antifreeze protein, Biochemistry 38, 4743-4749.
28. 2+-dependent carbohydrate-recognition domain of a rat mannose-binding protein. Analysis by random cassette mutagenesis, J. Biol. Chem. 267, 10831-10841.
29. Poget, S. F., Legge, G. B., Proctor, M. R., Butler, P. J., Bycroft, M., and Williams, R. L. (1999) The structure of a tunicate C-type lectin from Polyandrocarpa misakiensis complexed with D-galactose, J. Mol. Biol. 290, 867-879.
30. Meier, M., Bider, M. D., Malashkevich, V. N., Spiess, M., and Burkhard, P. (2000) Crystal structure of the carbohydrate recognition domain of the H1 subunit of the asialoglycoprotein receptor, J. Mol. Biol. 300, 857-865.
31. 2+-dependent sugar recognition by animal lectins, Biochem. Soc. Trans. 24, 146-150.
32. Graversen, J. H., Lorentsen, R. H., Jacobsen, C., Moestrup, S. K., Sigurskjold, B. W., Thogersen, H. C., and Etzerodt, M. (1998) The plasminogen binding site of the C-type lectin tetranectin is located in the carbohydrate recognition domain, and binding is sensitive to both calcium and lysine, J. Biol. Chem. 273, 29241-29246.
33. Rees, D. C., Lewis, M., and Lipscomb, W. N. (1983) Refined crystal structure of carboxypeptidase A at 1.54 Å resolution, J. Mol. Biol. 168, 367-387.
34. Baker, E. N., and Hubbard, R. E. (1984) Hydrogen bonding in globular proteins, Prog. Biophys. Mol. Biol. 44, 97-179.
35. Wen, D., and Laursen, R. A. (1992) Structure-function relationships in an antifreeze polypeptide. The role of neutral, polar amino acids, J. Biol. Chem. 267, 14102-14108.
36. Chao, H., Sönnichsen, F. D., DeLuca, C. I., Sykes, B. D., and Davies, P. L. (1994) Structure-function relationship in the globular type III antifreeze protein: identification of a cluster of surface residues required for binding to ice, Protein Sci. 3, 1760-1769.
37. Jia, Z., DeLuca, C. I., Chao, H., and Davies, P. L. (1996) Structural basis for the binding of a globular antifreeze protein to ice, Nature 384, 285-288 [erratum: Jia, Z., DeLuca, C. I., Chao, H., and Davies, P. L. (1997) Nature 385, 555].
38. Chao, H., Houston, M. E., Jr., Hodges, R. S., Kay, C. M., Sykes, B. D., Loewen, M. C., Davies, P. L., and Sönnichsen, F. D. (1997) A diminished role for hydrogen bonds in antifreeze protein binding to ice, Biochemistry 36, 14652-14660.
39. Wen, D., and Laursen, R. A. (1992) A model for binding of an antifreeze polypeptide to ice, Biophys. J. 63, 1659-1662.