Differential pressure resistance in the activity of RNA polymerase isolated from Shewanella violacea and Escherichia coli

Extremophiles

Volumn 8, Issue 5, 2004, Pages 367-375

  Kawano, Hiroaki ^a,b   Nakasone, Kaoru ^c   Matsumoto, Masamitsu ^d   Yoshida, Yasuhiko ^b   Usami, Ron ^b   Kato, Chiaki ^a   Abe, Fumiyoshi ^a  

^a JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^b TOYO UNIVERSITY   (Japan)

^c KINKI UNIVERSITY   (Japan)

^d Teramecs Ltd   (Japan)

Author keywords

High pressure electrophoresis apparatus; High pressure resistance; Piezophile; Rna polymerase; Shewanella violacea

Indexed keywords

BACTERIAL PROTEIN; BACTERIAL RNA; DNA DIRECTED RNA POLYMERASE; RNA POLYMERASE SIGMA 70; SIGMA FACTOR;

ARTICLE; BIOCHEMISTRY; BIOLOGICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; GENETICS; INSTRUMENTATION; METABOLISM; METHODOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRESSURE; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; SHEWANELLA; SPECIES DIFFERENCE; TIME; TWO DIMENSIONAL GEL ELECTROPHORESIS; X RAY CRYSTALLOGRAPHY;

BACTERIAL PROTEINS; BIOCHEMISTRY; CRYSTALLOGRAPHY, X-RAY; DNA-DIRECTED RNA POLYMERASES; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; MODELS, GENETIC; MODELS, MOLECULAR; PRESSURE; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; RNA, BACTERIAL; SHEWANELLA; SIGMA FACTOR; SPECIES SPECIFICITY; TIME FACTORS; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI; SHEWANELLA; SHEWANELLA VIOLACEA;

EID: 8744233998     PISSN: 14310651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00792-004-0397-0     Document Type: Article

References (28)

1. Abe F, Kato C, Horikoshi K (1999) Pressure-regulated metabolism in microorganisms. Trends Microbiol 7:447-453
2. Bartlett DH (2002) Pressure effects on in vivo microbial processes. Biochim Biophys Acta 1595:367-381
3. Bartlett DH, Wright M, Yayanos AA, Silverman M (1989) Isolation of a gene regulated by hydrostatic pressure in a deep-sea bacterium. Nature 342:572-574
4. Burgess RR, Jendrisak JJ (1975) A procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography. Biochemistry 14:4634-4638
5. Chilukuri LN, Bartlett DH (1997) Isolation and characterization of the gene encoding single-stranded-DNA-binding protein (SSB) from four marine Shewanella strains that differ in their temperature and pressure optima for growth. Microbiology 143:1163-1174
6. Chilukuri LN, Bartlett DH, Fortes PA (2002) Comparison of high pressure-induced dissociation of single-stranded DNA-binding protein (SSB) from high pressure-sensitive and high pressure-adapted marine Shewanella species. Extremophiles 6:377-383
7. Erijman L, Clegg RM (1995) Heterogeneity of E. coli RNA polymerase revealed by high pressure. J Mol Biol 253:259-265
8. Erijman L, Clegg RM (1996) High-pressure electrophoresis in narrow bore glass tubes: One- and two-dimensional separations of protein subunits. Rev Sci Instrum 67:813-817
9. Fujita M, Amemura A (1992) Purification and characterization of a DNA-dependent RNA polymerase from Pseudomonas putida. Biosci Biotechnol Biochem 56:1797-1800
10. 70 protein to the core subunits of Escherichia coli RNA polymerase, studied by iron-EDTA protein footprinting. Proc Natl Acad Sci USA 93:71-75
11. Gross M, Jaenicke R (1994) Proteins under pressure. The influence of high hydrostatic pressure on structure, function and assembly of proteins and protein complexes. Eur J Biochem 221:617-630
12. Hager DA, Jin DJ, Burgess RR (1990) Use of Mono Q high-resolution ion-exchange chromatography to obtain highly pure and active Escherichia coli RNA polymerase. Biochemistry 29:7890-7894
13. Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, Read TD, Eisen JA, Seshadri R, Ward N, Methe B, Clayton RA, Meyer T, Tsapin A, Scott J, Beanan M, Brinkac L, Daugherty S, DeBoy RT, Dodson RJ, Durkin AS, Haft DH, Kolonay JF, Madupu R, Peterson JD, Umayam LA, White O, Wolf AM, Vamathevan J, Weidman J, Impraim M, Lee K, Berry K, Lee C, Mueller J, Khouri H, Gill J, Utterback TR, McDonald LA, Feldblyum TV, Smith HO, Venter JC, Nealson KH, Fraser CM (2002) Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat Biotechnol 20:1118-1123
14. Ikegami A, Nakasone K, Kato C, Nakamura Y, Yoshikawa I, Usami R, Horikoshi K (2000) Glutamine synthetase gene expression at elevated hydrostatic pressure in a deep-sea piezophilic Shewanella violacea. FEMS Microbiol Lett 192:91-95
15. Kato C, Sato T, Horikoshi K (1995) Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples. Biodiv Conserv 4:1-9
16. Kato C, Ikegami A, Smorawinska M, Usami R, Horikoshi K (1997) Structure of genes in a pressure-regulated operon and adjacent regions from a barotolerant bacterium strain DSS12. J Mar Biotechnol 5:210-218
17. Kawano H, Nakasone K, Ikegami A, Kato C, Usami R, Horikoshi K (2002) Purification and characterization of RNA polymerase from deep-sea piezophilic Shewanella violacea. JAMSTECR 45:1-6
18. Kumar KP, Chatterji D (1988) An improved method for the purification of DNA-dependent RNA polymerase from Escherichia coli. J Biochem Biophys Methods 15:235-240
19. 70 subunit fragment from E. coli RNA polymerase. Cell 87:127-136
20. Nakasone K, Ikegami A, Kato C, Usami R, Horikoshi K (1998) Mechanisms of gene expression controlled by pressure in deep-sea microorganisms. Extremophiles 2:149-154
21. Nakasone K, Ikegami A, Kato C, Usami R, Horikoshi K (2000a) Analysis of cis-elements upstream of the pressure-regulated operon in the barophilic bacterium Shewanella violacea strain DSS12. FEMS Microbiol Lett 176:351-356
22. Nakasone K, Ikegami A, Fujii S, Kato C, Horikoshi K (2000b) Isolation and piezoresponse of the rpoA gene encoding the RNA polymerase α subunit from the deep-sea piezophilic Shewanella violacea. FEMS Microbiol Lett 193:261-268
23. 54 factor with a two-component regulatory system in Shewanella violacea. Extremophiles 6:89-95
24. Nogi Y, Kato C, Horikoshi K (1998) Taxonomic studies of deep-sea barophilic Shewanella species, and Shewanella violacea sp. nov. Arch Microbiol 170:331-338
25. Silva JL, Weber G (1993) Pressure stability of proteins. Annu Rev Phys Chem 44:89-113
26. Welch TJ, Bartlett DH (1998) Identification of a regulatory protein required for pressure-responsive gene expression in the deep-sea bacterium Photobacterium species strain SS9. Mol Microbiol 27:977-985
27. Wu FY, Yarbrough LR, Wu CW (1976) Conformational transition of Escherichia coli RNA polymerase induced by the interaction of sigma subunit with core enzyme. Biochemistry 15:3254-3258
28. Yura T, Ishihama A (1979) Genetics of bacterial RNA polymerases. Annu Rev Genet 13:59-97