Identification of hair cycle-associated genes from time-course gene expression profile data by using replicate variance

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 45, 2004, Pages 15955-15960

  Lin, Kevin K ^a   Chudova, Darya ^a,b   Hatfield, G Wesley ^a,c   Smyth, Padhraic ^a,b   Andersen, Bogi ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Ringgold Standard Institution Informatics   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

ALGORITHM; ANIMAL TISSUE; ARTICLE; DNA MICROARRAY; GENE EXPRESSION; HAIR FOLLICLE; HAIR GROWTH; IN SITU HYBRIDIZATION; MORPHOGENESIS; MOUSE; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION;

ALGORITHMS; ANALYSIS OF VARIANCE; ANIMALS; GENE EXPRESSION; GENE EXPRESSION PROFILING; HAIR FOLLICLE; IN SITU HYBRIDIZATION; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION; RNA, MESSENGER; TIME FACTORS;

ANIMALIA; EUKARYOTA;

EID: 8644265125     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0407114101     Document Type: Article

References (37)

1. Stenn, K. S. & Paus, R. (2001) Physiol. Rev. 81, 449-494.
2. Fuchs, E., Merrill, B. J., Jamora, C. & DasGupta, R. (2001) Dev. Cell 1, 13-25.
3. Taylor, G., Lehrer, M. S., Jensen, P. J., Sun, T. T. & Lavker, R. M. (2000) Cell 102, 451-461.
4. Oshima, H., Rochat, A., Kedzia, C., Kobayashi, K. & Barrandon, Y. (2001) Cell 104, 233-245.
5. Tumbar, T., Guasch, G., Greco, V., Blanpain, C, Lowry, W. E., Rendl, M. & Fuchs, E. (2004) Science 303, 359-363.
6. Morris, R. J., Liu, Y., Marles, L., Yang, Z., Trempus, C, Li, S., Lin, J. S., Sawicki, J. A. & Cotsarelis, G. (2004) Nat. Biotechnol. 22, 411-417.
7. Headon, D. J. & Overbeek, P. A. (1999) Nat. Genet. 22, 370-374.
8. Andl, T., Reddy, S. T., Gaddapara, T. & Millar, S. E. (2002) Dev. Cell 2, 643-653.
9. Van Mater, D., Kolligs, F. T., Dlugosz, A. A. & Fearon, E. R. (2003) Genes Dev. 17, 1219-1224.
10. Paus, R. & Cotsarelis, G. (1999) N. Engl. J. Med. 341, 491-497.
11. Gailani, M. R., Stahle-Backdahl, M., Leffell, D. J., Glynn, M., Zaphiropoulos, P. G., Pressman, C., Unden, A. B., Dean, M., Brash, D. E., Bale, A. E., et al. (1996) Nat. Genet. 14, 78-81.
12. Hahn, H., Wicking, C, Zaphiropoulous, P. G., Gailani, M. R., Shanley, S., Chidambaram, A., Vorechovsky, I., Holmberg, E., Unden, A. B., Gillies, S., et al. (1996) Cell 85, 841-851.
13. Chan, E. F., Gat, U., McNiff, J. M. & Fuchs, E. (1999) Nat. Genet. 21, 410-413.
14. Rocke, D. M. & Durbin, B. (2003) Bioinformatics 19, 966-972.
15. Huber, W., von Heydebreck, A., Sultmann, H., Poustka, A. & Vingron, M. (2002) Bioinformatics 18, Suppl. 1, S96-S104.
16. Geller, S. C., Gregg, J. P., Hagerman, P. & Rocke, D. M. (2003) Bioinformatics 19, 1817-1823.
17. Medvedovic, M., Yeung, K. Y. & Bumgarner, R. E. (2004) Bioinformatics 20, 1222-1232.
18. Dempster, A. P., Laird, N. M. & Rubin, D. B. (1977) J. R. Stat. Soc. 39, 1-38.
19. Paus, R., Muller-Rover, S., Van Der Veen, C., Maurer, M., Eichmuller, S., Ling, G., Hofmann, U., Foitzik, K., Mecklenburg, L. & Handjiski, B. (1999) J. Invest. Dermatol. 113, 523-532.
20. Chuaqui, R. F., Bonner, R. F., Best, C. J., Gillespie, J. W., Faig, M. J., Hewitt, S. M., Phillips, J. L., Krizman, D. B., Tangrea, M. A., Ahram, M., et al. (2002) Nat. Genet. 32, Suppl., 509-514.
21. Reiner, A., Yekutieli, D. & Benjamini, Y. (2003) Bioinformatics 19, 368-375.
22. Storey, J.D. & Tibshirani, R. (2003) Proc. Natl. Acad. Sci. USA 100, 9440-9445.
23. Eisen, M. B., Spellman, P. T., Brown, P. O. & Botstein, D. (1998) Proc. Natl. Acad. Sci. USA 95, 14863-14868.
24. Tavazoie, S., Hughes, J. D., Campbell, M. J., Cho, R. J. & Church, G. M. (1999) Nat. Genet. 22, 281-285.
25. Yeung, K. Y., Fraley, C, Murua, A., Raftery, A. E. & Ruzzo, W. L. (2001) Bioinformatics 17, 977-987.
26. Schwartz, G. (1978) Ann. Stat. 6, 461-464.
27. Smyth, P. (2000) Stat. Comput. 9, 63-72.
28. Haendler, B., Toda, I., Sullivan, D. A. & Schleuning, W. D. (1999) J. Cell. Physiol. 178, 371-378.
29. Hayashi, M., Fujimoto, S., Takano, H., Ushiki, T., Abe, K., Ishikura, H., Yoshida, M. C., Kirchhoff, C., Ishibashi, T. & Kasahara, M. (1996) Genomics 32, 367-374.
30. Karhumaa, P., Leinonen, J., Parkkila, S., Kaunisto, K., Tapanainen, J. & Rajaniemi, H. (2001) Proc. Natl. Acad. Sci. USA 98, 11604-11608.
31. Sok, J., Wang, X. Z., Batchvarova, N., Kuroda, M., Harding, H. & Ron, D. (1999) Mol. Cell. Biol. 19, 495-504.
32. Panda, S., Antoch, M. P., Miller, B. H., Su, A. I., Schook, A. B., Straume, M., Schultz, P. G., Kay, S. A., Takahashi, J. S. & Hogenesch, J. B. (2002) Cell 109, 307-320.
33. Storch, K. F., Lipan, O., Leykin, I., Viswanathan, N., Davis, F. C., Wong, W. H. & Weitz, C. J. (2002) Nature 417, 78-83.
34. Master, S. R., Hartman, J. L., D'Cruz, C. M., Moody, S. E., Keiper, E. A., Ha, S. I., Cox, J. D., Belka, G. K. & Chodosh, L. A. (2002) Mol. Endocrinol. 16, 1185-1203.
35. Rudolph, M. C., McManaman, J. L., Hunter, L., Phang, T. & Neville, M. C. (2003) J. Mammary Gland Biol. Neoplasia 8, 287-307.
36. Clarkson, R. W., Wayland, M. T., Lee, J., Freeman, T. & Watson, C. J. (2004) Breast Cancer Res. 6, R92-R109.
37. Schlake, T., Beibel, M., Weger, N. & Boehm, T. (2004) Gene Expr. Patterns 4, 141-152.