Cyclic peptides selected by phage display mimic the natural epitope recognized by a monoclonal anti-colicin A antibody

Journal of Peptide Science

Volumn 10, Issue 11, 2004, Pages 648-658

  Coulon, Stephanie ^a   Metais, Jean Yves ^b   Chartier, Martine ^b   Briand, Jean Paul ^c   Baty, Daniel ^b  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b CNRS   (France)

^c INSTITUT DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

Author keywords

Decapeptide library; Disulfide linked peptide; Epitope mapping; Phage display

Indexed keywords

COLICIN A; CYCLOPEPTIDE; EPITOPE; MONOCLONAL ANTIBODY; PEPTIDE LIBRARY;

ANTIGEN ANTIBODY REACTION; ARTICLE; BACTERIOPHAGE; CONSENSUS SEQUENCE; CONTROLLED STUDY; DISULFIDE BOND; ENZYME LINKED IMMUNOSORBENT ASSAY; ESCHERICHIA COLI; MOLECULAR CLONING; MOLECULAR MIMICRY; MOLECULAR RECOGNITION; NONHUMAN; PHAGE DISPLAY; PRIORITY JOURNAL; PROTEIN BINDING; RANDOMIZATION; WILD TYPE;

AMINO ACID SEQUENCE; ANTIBODIES, MONOCLONAL; ANTIBODY SPECIFICITY; COLICINS; CONSENSUS SEQUENCE; EPITOPE MAPPING; EPITOPES; MOLECULAR MIMICRY; PEPTIDE LIBRARY; PEPTIDES, CYCLIC;

FILAMENTOUS BACTERIOPHAGE;

EID: 8644263987     PISSN: 10752617     EISSN: None     Source Type: Journal    
DOI: 10.1002/psc.574     Document Type: Article

References (39)

1. Amit AG, Mariuzza RA, Phillips SE, Poljak RJ. Three-dimensional structure of an antigen-antibody complex at 2.8Å resolution. Science 1986; 233: 747-753.
2. Chothia C. Antigen recognition. Cur. Opin. Struc. Biol. 1991; 1: 53-59.
3. Arnon R, Van Regenmortel MH. Structural basis of antigenic specificity and design of new vaccines. FASEB J. 1992; 6: 3265-3274.
4. Geysen HM, Rodda SJ, Mason TJ, Tribbick G, Schoofs PG. Strategies for epitope analysis using peptide synthesis. J. Immunol. Methods 1987; 102: 259-274.
5. Wade-Evans A, Jenkins JR. Precise epitope mapping of the murine transformation-associated protein, p53. EMBO J. 1985; 4 699-706.
6. Vojtesek B, Bartek J, Midgley CA, Lane DP. An immunochemical analysis of the human nuclear phosphoprotein p53. New monoclonal antibodies and epitope mapping using recombinant p53. J. Immunol. Methods 1992; 151: 237-244.
7. Scott JK, Smith GP. Searching for peptide ligands with an epitope library. Science 1990; 249: 386-390.
8. Mattheakis LC, Bhatt RR, Dower WJ. An in vitro polysome display system for identifying ligands from very large peptide libraries. Proc. Natl Acad. Sci. USA 1994; 91: 9022-9026.
9. Hanes J, Plückthun A. In vitro selection and evolution of functional proteins by using ribosome display. Proc. Natl Acad. Sci. USA 1997; 94: 4937-4942.
10. Cwirla SE, Peters EA, Barrett RW, Dower WJ. Peptides on phage: a vast library of peptides for identifying ligands. Proc. Natl Acad. Sci. USA 1990; 87: 6378-6382.
11. Felici F, Castagnoli L, Musacchio A, Jappelli R, Cesareni G. Selection of antibody ligands from a large library of oligopeptides expressed on a multivalent exposition vector. J. Mol. Biol. 1991; 222: 301-310.
12. Stephen CW, Helminen P, Lane DP. Characterisation of epitopes on human p53 using phage-displayed peptide libraries: insights into antibody-peptide interactions. J. Mol. Biol. 1995; 248: 58-78.
13. Coley AM, Campanale NV, Casey JL, Hodder AN, Crewther PE, Anders RF, Tilley LM, Foley M. Rapid and precise epitope mapping of monoclonal antibodies against Plasmodium falciparum AMA1 by combined phage display of fragments and random peptides. Protein Eng 2001; 14: 691-698.
14. Distefano MD, Zhong A, Cochran AG. Quantifying beta-sheet stability by phage display. J. Mol. Biol. 2002; 322: 179-188.
15. Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, Cesareni G. A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science 2002; 295: 321-324.
16. Isalan M, Klug A, Choo Y. A rapid, generally applicable method to engineer zinc fingers illustrated by targeting the HIV-1 promoter. Nat. Biotechnol. 2001; 19: 656-660.
17. Gazouli M, Han Z, Papadopoulos V. Identification of a peptide antagonist to the peripheral-type benzodiazepine receptor that inhibits hormone-stimulated leydig cell steroid formation. J. Pharmacol. Exp. Ther. 2002; 303: 627-632.
18. Pillutla RC, Hsiao KC, Beasley JR, Brandt J, Ostergaard S, Hansen PH, Spetzler JC, Danielsen GM, Andersen AS, Brissette RE, Lennick M, Fletcher PW, Blume AJ, Schaffer L, Goldstein NI. Peptides identify the critical hotspots involved in the biological activation of the insulin receptor. J. Biol. Chem. 2002; 277: 22 590-22 594.
19. Karasseva NG, Glinsky VV, Chen NX, Komatireddy R, Quinn TP. Identification and characterization of peptides that bind human ErbB-2 selected from a bacteriophage display library. J. Protein Chem. 2002; 21: 287-296.
20. Rasmussen UB, Schreiber V, Schultz H, Mischler F, Schughart K. Tumor cell-targeting by phage-displayed peptides. Cancer Gene Ther 2002; 9: 606-612.
21. Maruta F, Parker AL, Fisher KD, Hallissey MT, Ismail T, Rowlands DC, Chandler LA, Kerr DJ, Seymour LW. Identification of FGF receptor-binding peptides for cancer gene therapy. Cancer Gene Ther 2002; 9: 543-552.
22. Saggio I, Laufer R. Biotin binders selected from a random peptide library expressed on phage. Biochem. J. 1993; 293: 613-616.
23. McLafferty MA, Kent RB, Ladner RC, Markland W. M 13 bacteriophage displaying disulfide-constrained microproteins. Gene 1993; 128: 29-36.
24. Scherf T, Kasher R, Balass M, Fridkin M, Fuchs S, Katchalski-Katzir E. A beta -hairpin structure in a 13-mer peptide that binds alpha -bungarotoxin with high affinity and neutralizes its toxicity. Proc. Natl Acad. Sci. USA 2001; 98: 6629-6634.
25. Mourez M, Kane RS, Mogridge J, Metallo S, Deschatelets P, Sellman BR, Whitesides GM, Collier RJ. Designing a polyvalent inhibitor of anthrax toxin. Nat. Biotechnol. 2001; 19: 958-961.
26. Kim WC, Rhee HI, Park BK, Suk KH, Cha SH. Isolation of peptide ligands that inhibit glutamate racemase activity from a random phage display library. J. Biomol. Screen 2000; 5: 435-440.
27. Matthews DJ, Wells JA. Substrate phage: selection of protease substrates by monovalent phage display. Science 1993; 260: 1113-1117.
28. Venkatesh N, Zaltsman Y, Somjen D, Gayer B, Boopathi E, Kasher R, Kulik T, Katchalski-Katzir E, Kohen F. A synthetic peptide with estrogen-like activity derived from a phage-display peptide library. Peptides 2002; 23: 573-580.
29. Baty D, Frenette M, Lloubés R, Gèli V, Howard SP, Pattus F, Lazdunski C. Functional domains of colicin A. Mol. Microbiol 1988; 2: 807-811.
30. Cavard D, Crozel V, Gorvel JP, Pattus F, Baty D, Lazdunski C. A molecular, genetic and immunological approach to the functioning of colicin A, a pore-forming protein. J. Mol. Biol. 1986; 187: 449-459.
31. Chames P, Fieschi J, Baty D, Duché D. Intracellular immunization of prokaryotic cells against a bacteriotoxin. J. Bacteriol. 1998; 180: 514-518.
32. Baty D, Lloubès R, Géli V, Lazdunski C, Howard SP. Extracellular release of colicin A is non-specific. EMBO J. 1987; 6: 2463-2468.
33. Géli V, Lloubès R, Zaat SA, van Spaendonk RM, Rollin C, Bénédetti H, Lazdunski C. Recognition of the colicin A N terminal epitope 1C 11 in vitro and in vivo in Escherichia coli by its cognate monoclonal antibody. FEMS Microbiol. Lett. 1993; 109: 335-342.
34. Harlow E, Lane DP. Antibodies: A Laboratory Manual. Cold Spring Harbor Laboratory Press. Cold Spring Harbor: New York, 1988.
35. Smith GP, Scott JK. Libraries of peptides and proteins displayed on filamentous phage. Methods Enzymol. 1993; 217: 228-257.
36. Valadon P, Nussbaum G, Boyd LF, Margulies DH, Scharff MD. Peptide libraries define the fine specificity of anti-polysaccharide antibodies to Cryptococcus neoformans. J. Mol. Biol. 1996; 261 11-22.
37. Neimark J, Briand JP. Development of a fully automated multichannel peptide synthesizer with integrated TFA cleavage capability. Pept. Res. 1993; 6: 219-228.
38. King DS, Fields CG, Fields GB. A cleavage method which minimizes side reactions following Fmoc solid phase peptide synthesis. Int. J. Pept. Protein Res. 1990; 36: 255-266.
39. Dyson HJ, Wright PE. Defining solution conformations of small linear peptides. Annu. Rev. Biophys. Biophys. Chem. 1991; 20: 519-538.