Chromosome Y microsatellites: Population genetic and evolutionary aspects

International Journal of Legal Medicine

Volumn 110, Issue 3, 1997, Pages 134-140

  De Knijff, P ^a   Kayser, M ^b   Caglia A ^c   Corach, D ^d   Fretwell, N ^e   Gehrig, C ^f   Graziosi, G ^g   Heidorn, F ^h   Herrmann, S ⁱ   Herzog, B ^j   Hidding, M ^k   Honda, K ^l   Jobling, M ^e   Krawczak, M ^m   Leim, K ⁿ   Meuser, S ^o   Meyer, E ^p   Oesterreich, W ^q   Pandya, A ^r   Parson, W ^s   Penacino, G ^d   Perez Lezaun, A ^t   Piccinini, A ^u   Prinz, M ^v   Schmitt, C ^k   Schneider, P M ^o   Szibor, R ^w   Teifel Greding, J ^x   Weichhold, G ^y   Roewer, L ^b   more..

^a LEIDEN UNIVERSITY   (Netherlands)

^b Inst für Gerichtliche Medizin   (Germany)

^c CATHOLIC UNIVERSITY   (Italy)

^d UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^e UNIVERSITY OF LEICESTER   (United Kingdom)

^f Institut fur Rechtsmedizin   (Switzerland)

^g UNIVERSITY OF TRIESTE   (Italy)

^h Institute of Rechtsmedizin   (Germany)

ⁱ Landeskriminalamt Berlin   (Germany)

^j Institut fur Rechtsmedizin   (Germany)

^k Institut fur Rechtsmedizin   (Germany)

^l OSAKA UNIVERSITY MEDICAL SCHOOL   (Japan)

^m CARDIFF UNIVERSITY   (United Kingdom)

ⁿ Inst Rechtsmedizin V   (Germany)

^o Institut fur Rechtsmedizin   (Germany)

^p UNIVERSITY OF MÜNSTER   (Germany)

^q Landeskriminalamt Brandenburg   (Germany)

^r UNIVERSITY OF OXFORD   (United Kingdom)

^s Institut fur Gerichtliche Medizin   (Austria)

^t UNIVERSITY OF BARCELONA   (Spain)

^u UNIVERSITY OF MILAN   (Italy)

^v OCME   (United States)

^w Institut für Rechtsmedizin der Universität   (Germany)

^x Kriminaltechnisches Institut   (Germany)

^y Institut fur Rechtsmedizin   (Germany)

more..

Author keywords

Evolution; Genetic affinities; Haplotypes; Population studies; STR; Y chromosome

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ARTICLE; CONTROLLED STUDY; EVOLUTION; GENE FREQUENCY; GENETIC DISTANCE; HAPLOTYPE; HUMAN; MALE; NORMAL HUMAN; PRIORITY JOURNAL; TANDEM REPEAT; Y CHROMOSOME;

ETHNIC GROUPS; EVOLUTION; GENE FREQUENCY; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MALE; MICROSATELLITE REPEATS; MODELS, GENETIC; PHYLOGENY; REPETITIVE SEQUENCES, NUCLEIC ACID; Y CHROMOSOME;

EID: 8544278002     PISSN: 09379827     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004140050052     Document Type: Article

References (33)

1. Weber JL (1990) Informativeness of human (dC-dA)n.(dG-dT)n polymorphisms. Genomics 7:524-530
2. Di Rienzo A, Peterson AC, Garza JC, Valdes AM, Slatkin M, Freimer NB (1994) Mutational processes of simple-sequence repeat loci in human populations. Proc Natl Acad Sci USA 91: 3166-3170
3. Bowcock AM, Ruiz-Linares A, Tornfohrde J, Minch E, Kidd JR, Cavalli-Sforza LL (1994) High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455-457
4. Jorde LB, Bamshad MJ, Watkins WS, Zenger R, Fraley AE, Krakowiak PA, Carpenter KD, Soodyall H, Jenkins T, Rogers AR (1995) Origins and affinities of modern humans: a comparison of mitochondrial and nuclear genetic data. Am J Hum Genet 57:523-538
5. Underhill PA, Jin L, Zemans R, Oefner PJ, Cavalli-Sforza LL (1996) A pre-Columbian Y chromosome-specific transition and its implications for human evolutionary history. Proc Natl Acad Sci USA 93:196-200
6. Jobling MA, Tyler-Smith C (1995) Father and sons - the Y chromosome and human evolution. Trends Genet 11:449-456
7. Dorit RL, Akashi H, Gilben W (1995) Absence of polymorphism at the ZFY locus on the human Y chromosome. Science 268:1183-1185
8. Hammer MF (1995) A recent common ancestry for human Y chromosomes. Nature 378:376-378
9. Whitfield LS, Sulston JE, Goodfellow PN (1995) Sequence variation of the human Y chromosome. Nature 378:379-380
10. Mathias N, Bayes M, Tyler-Smith C (1994) Highly informative compound haplotypes for the human Y chromosome. Hum Mol Genet 3:115-123
11. Roewer L, Arnemann J, Spurr NK, Grzeschik K-H, Epplen JT (1992) Simple repeat sequences on the human Y chromosome are equally polymorphic as their autosomal counterparts. Hum Genet 89:389-394
12. Roewer L, Kayser M, Dieltjes P, Nagy M, Bakker E, Krawczak M, de Knijff P (1996) Analysis of molecular variance (AMOVA) of Y-chromosome-specific microsatellites in two closely related human populations. Hum Mol Genet 5:1029-1033
13. Cooper G, Amos W, Hoffman D, Rubinsztein DC (1996) Network analysis of human Y microsatellite haplotypes. Hum Mol Genet 5:1759-1766
14. Jobling MA, Samara V, Pandya A, Fretwell N, Bernasconi B, Mitchell RJ, Gerelsaikhan T, Dashnyam B, Sajantila A, Salo PJ, Nakahori Y, Disteche CM, Thangaraj K, Singh L, Crawford MH, Tyler-Smith C (1996) Recurrent duplication and deletion polymorphisms on the long arm of the Y chromosome in normal males. Hum Mol Genet 5:1767-1775
15. Kayser M, Caglià A, Corach D, Fretwell N, Gehrig C, Graziosi G, Heidorn F, Hermann S, Herzog B, Hidding M, Honda K, Jobling M, Krawczak M, Leim K, Meyer E, Oesterreich W, Pandya A, Parson W, Piccinini A, Perez-Lezaun A, Prinz M, Schmitt C (1997) Evaluation of Y chromosomal STRs: a multicenter study. Int J Legal Med 110:125-133
16. Jobling M, Pandya A, Tyler-Smith C (1997) The Y chromosome in forensic analysis and paternity testing. Int J Legal Med 110:118-124
17. Santos FR, Gerelsaikhan T, Munkhtuja B, Oyunsuren T, Epplen J, Pena SDJ (1996) Geographic differences in the allele frequencies of the human Y-linked tetranucleotide polymorphism DYS19. Hum Genet 97:309-313
18. Cavalli-Sforza LL, Menozzi P, Piazza A (1994) The history and geography of human genes. Princeton University Press, Princeton NJ
19. DNA Commission of the ISFH (1994) Report concerning further recommendations of the DNA Commission of the ISFH regarding PCR-based polymorphisms in STR (short tandem repeats). Int J Legal Med 107:159-160
20. Reynolds J, Weir BS, Cockerham CC (1983) Estimation of the coancestry coefficient: basis for short term genetic distance. Genetics 105:767-779
21. Nei M (1972) Genetic distance between populations. Amer Nat 106:283-291
22. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Am J Hum Genet 19: 233-257
23. Shriver MD, Jin L, Boerwinkle E, Deka R, Ferrel RE, Chakraborty R (1995) A novel measure of genetic distance for highly polymorphic tandem repeat loci. Mol Biol Evol 12:914-920
24. Goldstein DB, Ruiz Linares A, Cavalli-Sforza LL, Feldman MW (1995) Genetic absolute dating based on microsatellites and the origin of modern humans. Proc Natl Acad Sci USA 92: 6723-6727
25. Takezaki N, Nei M (1996) Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144:389-399
26. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
27. Felsenstein J (1989) Phylip-phylogeny inference package (version 3.2). Cladistics 5:164-166
28. Michalakis Y, Excoffier L (1996) A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci. Genetics 142:1061-1064
29. Melton T, Peterson R, Redd AJ, Saha N, Sofro ASM, Martinson J, Stoneking M (1995) Polynesian genetic affinities with Southeast Asian populations as identified by mtDNA analysis. Am J Hum Genet 57:403-414
30. Vigilant L, Stoneking M, Harpending H, Hawkes K, Wilson AC (1991) African populations and the evolution of human mitochondrial DNA. Science 253:1503-1507
31. Jorde LB, Bamshad MJ, Watkins WS, Zenger R, Fraley AE, Krakowiak PA, Carpenter KD, Soodyall H, Jenkins T, Rogers AR (1995) Origins and affinities of modern humans: a comparison of mitochondrial and nuclear genetic data. Am J Hum Genet 57:523-538
32. Pérez-Lezaun A, Calafell F, Mateu E, Comas D, Ruiz-Pacheco R, Bertranpetit J (1997) Microsatellite variation and the differentiation of modern humans. Hum Genet 99:1-7
33. Heyer E, Puymirat J, Dieltjes P, Bakker E, de Knijff P (1997) Estimating Y-chromosome-specific microsatellite mutation frequencies using deep rooting pedigrees. Hum Mol Genet 6 (in press)