ANOLEA: A www Server to Assess Protein Structures

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, ISMB 1997

Volumn , Issue , 1997, Pages

  Melo, Francisco ^a   Devos, Damien ^a   Depiereux, Eric ^a   Feytmans, Ernest ^a  

^a UNIVERSITY OF NAMUR   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMS; MOLECULES; PERSONAL COMPUTERS; PROTEINS;

AMINO-ACIDS; ATOMIC LEVELS; ENERGY CALCULATION; ENVIRONMENT ASSESSMENTS; HEAVY ATOMS; LOCAL ENVIRONMENTS; NON-LOCAL INTERACTIONS; NONLOCAL; PROTEINS STRUCTURES; THREE DIMENSIONS;

AMINO ACIDS;

EID: 85166328326     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (9)

1. Melo, F. and Feytmans, E. (1997) Detection of high energy zones in protein structures; correlation with structural errors or with potential protein-protein interacting zones. (Submitted)
2. Jones, D.T., Taylor, W.R. & Thornton, J.M. (1992) A new approach to protein fold recognition. Nature 358, 86-89.
3. Sippl, M.J. (1993) Boltzmann’s principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures. J. Computer Aided Mol. Design 7, 473-501.
4. Sippl, M.J. (1993) Recognition of errors in three-dimensional structures of proteins. Proteins 17, 355-362
5. Verkhivker, G., Appelt, K., Freer, S.T. and Villafranca, J.E. (1995) Empirical free energy calculations of ligand-protein crystallographic complexes. I. Knowledge-based ligan-protein interaction potentials applied to the prediction of human immunodeficiency virus 1 protease binding affinity. Protein Engineering 8, 677-691.
6. Elofsson, A., Le Grand, S.M. and Eisenberg, D. (1995) Local moves: An efficient algorithm for simulation of protein folding. Proteins: Structure, Function, and Genetics 23, 73-82.
7. Melo, F. and Feytmans, E. (1997) Novel Knowledge-based mean force potential at atomic level. J. Mol. Biol. 267, 207-222.
8. Bernstein, F.C., Koetzle, T.F., Williams, G.J.B, Meyer, E.F., Brice, M.D. Jr., Rodgers, J.R., Kennard, O., Shimanouchi, T. & Tasumi, M. (1977) Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.
9. Mosimann, S., Meleshko, R. and James, M.N.G. (1995) A critical assesment of comparative molecular modeling of tertiary structures of proteins. Proteins 23, 301-317.