-
2
-
-
84879489738
-
-
(manuscript in review)
-
Sophia Ananiadou, Dan Sullivan, Gina-Anne Levow, Joseph Gillespie, Chunhong Mao, Sampo Pyysalo, Jun'ichi Tsujii, and Bruno Sobral. 2010b. Named entity recognition for bacterial type IV secretion systems. (manuscript in review).
-
(2010)
Named entity recognition for bacterial type IV secretion systems
-
-
Ananiadou, Sophia1
Sullivan, Dan2
Levow, Gina-Anne3
Gillespie, Joseph4
Mao, Chunhong5
Pyysalo, Sampo6
'ichi Tsujii, Jun7
Sobral, Bruno8
-
3
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, and G Sherlock. 2000. Gene ontology: tool for the unification of biology. Nature genetics, 25:25-29.
-
(2000)
Nature genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M1
Ball, CA2
Blake, JA3
Botstein, D4
Butler, H5
Cherry, JM6
Davis, AP7
Dolinski, K8
Dwight, SS9
Eppig, JT10
Harris, MA11
Hill, DP12
Issel-Tarver, L13
Kasarskis, A14
Lewis, S15
Matese, JC16
Richardson, JE17
Ringwald, M18
Rubin, GM19
Sherlock, G20
more..
-
4
-
-
85121797056
-
Extracting complex biological events with rich graph-based feature sets
-
Boulder, Colorado, June. Association for Computational Linguistics
-
Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, and Tapio Salakoski. 2009. Extracting complex biological events with rich graph-based feature sets. In Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pages 10-18, Boulder, Colorado, June. Association for Computational Linguistics.
-
(2009)
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task
, pp. 10-18
-
-
Björne, Jari1
Heimonen, Juho2
Ginter, Filip3
Airola, Antti4
Pahikkala, Tapio5
Salakoski, Tapio6
-
6
-
-
33751088706
-
Extraction of gene-disease relations from medline using domain dictionaries and machine learning
-
Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, and Jun'ichi Tsujii. 2006. Extraction of gene-disease relations from medline using domain dictionaries and machine learning. In Proceedings of the Pacific Symposium on Biocomputing (PSB'06), pages 4-15.
-
(2006)
Proceedings of the Pacific Symposium on Biocomputing (PSB'06)
, pp. 4-15
-
-
Chun, Hong-Woo1
Tsuruoka, Yoshimasa2
Kim, Jin-Dong3
Shiba, Rie4
Nagata, Naoki5
Hishiki, Teruyoshi6
'ichi Tsujii, Jun7
-
8
-
-
55749108735
-
Type IV secretion systems: tools of bacterial horizontal gene transfer and virulence
-
Mario Juhas, Derrick W. Crook, and Derek W. Hood. 2008. Type IV secretion systems: tools of bacterial horizontal gene transfer and virulence. Cellular microbiology, 10(12):2377-2386.
-
(2008)
Cellular microbiology
, vol.10
, Issue.12
, pp. 2377-2386
-
-
Juhas, Mario1
Crook, Derrick W.2
Hood, Derek W.3
-
9
-
-
40749087717
-
Corpus annotation for mining biomedical events from lterature
-
Jin-Dong Kim, Tomoko Ohta, and Jun'ichi Tsujii. 2008. Corpus annotation for mining biomedical events from lterature. BMC Bioinformatics, 9(1):10.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 10
-
-
Kim, Jin-Dong1
Ohta, Tomoko2
'ichi Tsujii, Jun3
-
10
-
-
85104042765
-
Overview of BioNLP'09 Shared Task on Event Extraction
-
Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, and Jun'ichi Tsujii. 2009. Overview of BioNLP'09 Shared Task on Event Extraction. In Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop, pages 1-9.
-
(2009)
Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop
, pp. 1-9
-
-
Kim, Jin-Dong1
Ohta, Tomoko2
Pyysalo, Sampo3
Kano, Yoshinobu4
'ichi Tsujii, Jun5
-
11
-
-
36049040710
-
Assessment of the Second BioCreative PPI task: Automatic Extraction of Protein-Protein Interactions
-
L. Hirschman, M. Krallinger, and A. Valencia, editors, pages
-
Martin Krallinger, Florian Leitner, and Alfonso Valencia. 2007. Assessment of the Second BioCreative PPI task: Automatic Extraction of Protein-Protein Interactions. In L. Hirschman, M. Krallinger, and A. Valencia, editors, Proceedings of Second BioCreative Challenge Evaluation Workshop, pages 29-39.
-
(2007)
Proceedings of Second BioCreative Challenge Evaluation Workshop
, pp. 29-39
-
-
Krallinger, Martin1
Leitner, Florian2
Valencia, Alfonso3
-
13
-
-
40549140499
-
Banner: an executable survey of advances in biomedical named entity recognition
-
R. Leaman and G. Gonzalez. 2008. Banner: an executable survey of advances in biomedical named entity recognition. Pacific Symposium on Biocomputing, pages 652-663.
-
(2008)
Pacific Symposium on Biocomputing
, pp. 652-663
-
-
Leaman, R.1
Gonzalez, G.2
-
15
-
-
33847253112
-
Learning Language in Logic - Genic Interaction Extraction Challenge
-
J. Cussens and C. Nédellec, editors, pages
-
Claire Nédellec. 2005. Learning Language in Logic - Genic Interaction Extraction Challenge. In J. Cussens and C. Nédellec, editors, Proceedings of the 4th Learning Language in Logic Workshop (LLL05), pages 31-37.
-
(2005)
Proceedings of the 4th Learning Language in Logic Workshop (LLL05)
, pp. 31-37
-
-
Nédellec, Claire1
-
16
-
-
77958616587
-
Incorporating GENETAG-style annotation to GENIA corpus
-
Boulder, Colorado. Association for Computational Linguistics
-
Tomoko Ohta, Jin-Dong Kim, Sampo Pyysalo, and Jun'ichi Tsujii. 2009. Incorporating GENETAG-style annotation to GENIA corpus. In Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop, pages 106-107, Boulder, Colorado. Association for Computational Linguistics.
-
(2009)
Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop
, pp. 106-107
-
-
Ohta, Tomoko1
Kim, Jin-Dong2
Pyysalo, Sampo3
'ichi Tsujii, Jun4
-
17
-
-
33847608309
-
BioInfer: A corpus for information extraction in the biomedical domain
-
Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, and Tapio Salakoski. 2007. BioInfer: A corpus for information extraction in the biomedical domain. BMC Bioinformatics, 8(50).
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.50
-
-
Pyysalo, Sampo1
Ginter, Filip2
Heimonen, Juho3
Björne, Jari4
Boberg, Jorma5
Järvinen, Jouni6
Salakoski, Tapio7
-
18
-
-
12144290446
-
GeneWays: A system for extracting, analyzing, visualizing, and integrating molecular pathway data
-
Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur, Vasileios Hatzivassiloglou, and Carol Friedman. 2004. GeneWays: A system for extracting, analyzing, visualizing, and integrating molecular pathway data. Journal of Biomedical Informatics, 37(1):43-53.
-
(2004)
Journal of Biomedical Informatics
, vol.37
, Issue.1
, pp. 43-53
-
-
Rzhetsky, Andrey1
Iossifov, Ivan2
Koike, Tomohiro3
Krauthammer, Michael4
Kra, Pauline5
Morris, Mitzi6
Yu, Hong7
Duboué, Pablo Ariel8
Weng, Wubin9
John Wilbur, W.10
Hatzivassiloglou, Vasileios11
Friedman, Carol12
-
19
-
-
33947250174
-
Genetag: a tagged corpus for gene/protein named entity recognition
-
(Suppl 1)
-
Lorraine Tanabe, Natalie Xie, Lynne Thom, Wayne Matten, and John Wilbur. 2005. Genetag: a tagged corpus for gene/protein named entity recognition. BMC Bioinformatics, 6(Suppl 1):S3.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. S3
-
-
Tanabe, Lorraine1
Xie, Natalie2
Thom, Lynne3
Matten, Wayne4
Wilbur, John5
-
20
-
-
71749121869
-
Construction of an annotated corpus to support biomedical information extraction
-
Paul Thompson, Syed Iqbal, John McNaught, and Sophia Ananiadou. 2009. Construction of an annotated corpus to support biomedical information extraction. BMC Bioinformatics, 10(1):349.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.1
, pp. 349
-
-
Thompson, Paul1
Iqbal, Syed2
McNaught, John3
Ananiadou, Sophia4
-
21
-
-
75149158079
-
Investigating heterogeneous protein annotations toward cross-corpora utilization
-
Yue Wang, Jin-Dong Kim, Rune Saetre, Sampo Pyysalo, and Jun'ichi Tsujii. 2009. Investigating heterogeneous protein annotations toward cross-corpora utilization. BMC Bioinformatics, 10(1):403.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.1
, pp. 403
-
-
Wang, Yue1
Kim, Jin-Dong2
Saetre, Rune3
Pyysalo, Sampo4
'ichi Tsujii, Jun5
-
22
-
-
40749116424
-
BioCreative 2. Gene Mention Task
-
L. Hirschman, M. Krallinger, and A. Valencia, editors, pages
-
John Wilbur, Lawrence Smith, and Lorraine Tanabe. 2007. BioCreative 2. Gene Mention Task. In L. Hirschman, M. Krallinger, and A. Valencia, editors, Proceedings of Second BioCreative Challenge Evaluation Workshop, pages 7-16.
-
(2007)
Proceedings of Second BioCreative Challenge Evaluation Workshop
, pp. 7-16
-
-
Wilbur, John1
Smith, Lawrence2
Tanabe, Lorraine3
|