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Volumn 2002-November, Issue , 2002, Pages

NAMD: Biomolecular simulation on thousands of processors

Author keywords

[No Author keywords available]

Indexed keywords

DISSOCIATION; MOLECULAR DYNAMICS;

EID: 85114705648     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/SC.2002.10019     Document Type: Conference Paper
Times cited : (160)

References (13)
  • 1
    • 0023346636 scopus 로고
    • A partitioning strategy for nonuniform problems on multiprocessors
    • M. Berger and S. Bokhari. A partitioning strategy for nonuniform problems on multiprocessors. IEEE Trans. Computers, C-36:570-580, 1987.
    • (1987) IEEE Trans. Computers , vol.C-36 , pp. 570-580
    • Berger, M.1    Bokhari, S.2
  • 5
    • 33846823909 scopus 로고
    • Particle mesh Ewald. An N·log(N) method for Ewald sumsin large systems
    • T. Darden, D. York, and L. Pedersen. Particle mesh Ewald. An N·log(N) method for Ewald sumsin large systems. J. Chem. Phys., 98:10089-10092, 1993.
    • (1993) J. Chem. Phys. , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 8
    • 0002479236 scopus 로고    scopus 로고
    • Charm++: Parallel programming with message-driven objects
    • G. Wilson and Lu, editors, MIT Press
    • L. V. Kalé and S. Krishnan. Charm++: Parallel programming with message-driven objects. In G. V. Wilson and P. Lu, editors, Parallel Programming using C++, pages 175-213. MIT Press, 1996.
    • (1996) Parallel Programming Using C++ , pp. 175-213
    • Kalé, L.V.1    Krishnan, S.2
  • 9
    • 0036170241 scopus 로고    scopus 로고
    • The quadrics network: High-performance clustering technology
    • F. Petrini, W. chun Feng, A. Hoisie, S. Coll, and E. Frachtenberg. The quadrics network: High-performance clustering technology. IEEE Micro, 22(1):46- 57, 2002.
    • (2002) IEEE Micro , vol.22 , Issue.1 , pp. 46-57
    • Petrini, F.1    Feng, W.C.2    Hoisie, A.3    Coll, S.4    Frachtenberg, E.5
  • 10
    • 0000042162 scopus 로고    scopus 로고
    • A new parallel method for molecular dynamics simulation of macromolecular systems
    • S. J. Plimpton and B. A. Hendrickson. A new parallel method for molecular dynamics simulation of macromolecular systems. J. Comp. Chem., 17(3):326-337, 1996.
    • (1996) J. Comp. Chem. , vol.17 , Issue.3 , pp. 326-337
    • Plimpton, S.J.1    Hendrickson, B.A.2
  • 11
    • 0035013784 scopus 로고    scopus 로고
    • A system for interactive molecular dynamics simulation
    • J. F. Huges and C. H. Séquin, editors, New York, ACM SIGGRAPH
    • J. Stone, J. Gullingsrud, P. Grayson, and K. Schulten. A system for interactive molecular dynamics simulation. In J. F. Huges and C. H. Séquin, editors, 2001 ACM Symposium on Interactive 3D Graphics, pages 191-194, New York, 2001. ACM SIGGRAPH.
    • (2001) 2001 ACM Symposium on Interactive 3D Graphics , pp. 191-194
    • Stone, J.1    Gullingsrud, J.2    Grayson, P.3    Schulten, K.4
  • 12
    • 33646142007 scopus 로고    scopus 로고
    • Elan programming manual. http://www.lanl.gov/radiant/website/pubs/quadrics/qsnet.pdf.
    • Elan Programming Manual
  • 13
    • 84986518863 scopus 로고
    • AMBER: Assisted model building with energy refinement. A general p rogram for modeling molecules and their interactions
    • P. K. Weiner and P. A. Kollman. AMBER: Assisted model building with energy refinement. A general p rogram for modeling molecules and their interactions. J. Comp. Chem., 2(3):287-303, 1981.
    • (1981) J. Comp. Chem. , vol.2 , Issue.3 , pp. 287-303
    • Weiner, P.K.1    Kollman, P.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.