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Volumn 58, Issue 3, 2016, Pages 126-132

A history of DNA sequence assembly

Author keywords

De Bruijn graph; Shortest common superstring; Shotgun sequencing; String graph

Indexed keywords

DNA; DNA SEQUENCES; GENE ENCODING;

EID: 85113357568     PISSN: 16112776     EISSN: 21967032     Source Type: Journal    
DOI: 10.1515/itit-2015-0047     Document Type: Review
Times cited : (23)

References (23)
  • 2
    • 0023988195 scopus 로고
    • Genomic mapping by fingerprinting random clones: A mathematical analysis
    • E.S. Lander and M.S. Waterman. Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics, 2(3):231-239 1988.
    • (1988) Genomics , vol.2 , Issue.3 , pp. 231-239
    • Lander, E.S.1    Waterman, M.S.2
  • 3
    • 0030950735 scopus 로고    scopus 로고
    • Human whole-genome shotgun sequencing
    • J.L. Weber and E.W. Myers. Human Whole-Genome Shotgun Sequencing. Genome Research, 7:401-409 1997.
    • (1997) Genome Research , vol.7 , pp. 401-409
    • Weber, J.L.1    Myers, E.W.2
  • 5
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the humane genome
    • J.C. Venter, M.D. Adams, E.W. Myers,..., and X. Zhu. The Sequence of the Humane Genome. Science, 291:1304-1351 2001.
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1    Adams, M.D.2    Myers, E.W.3    Zhu, X.4
  • 6
    • 0021760072 scopus 로고    scopus 로고
    • SeqAID: A DNA sequence assembling program based on a mathematical model
    • H. Peltola, H. Saderlund, and E. Ukkonen. SEQAID: A DNA sequence assembling program based on a mathematical model. Nucleic Acids Research, 12:307-321 1984.
    • Nucleic Acids Research , vol.12 , pp. 307-321
    • Peltola, H.1    Saderlund, H.2    Ukkonen, E.3
  • 7
    • 0029197192 scopus 로고
    • Combinatorial algorithms for DNA sequence assembly
    • J. Kececioglu and E.W. Myers. Combinatorial algorithms for DNA sequence assembly. Algorithmica, 13(1/2):7-51 1995.
    • (1995) Algorithmica , vol.13 , Issue.1-2 , pp. 7-51
    • Kececioglu, J.1    Myers, E.W.2
  • 8
    • 85113382578 scopus 로고    scopus 로고
    • version 1.090518
    • Green, P. Phrap, version 1.090518. http://phrap.org. 2009.
    • (2009)
    • Green, P.P.1
  • 9
    • 0031978181 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using phred. II. Error probabilities
    • B. Ewing and P. Green. Basecalling of automated sequencer traces using phred. II. Error probabilities. Genome Research, 8:186-194 1998.
    • (1998) Genome Research , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 10
    • 0020494998 scopus 로고
    • Algorithms for approximate string matching
    • E. Ukkonen. Algorithms for approximate string matching. Information and Control, 64:100-118 1985.
    • (1985) Information and Control , vol.64 , pp. 100-118
    • Ukkonen, E.1
  • 11
    • 33745128489 scopus 로고
    • An o(nd) difference algorithm and its variations
    • E.W. Myers. An O(ND) Difference Algorithm and Its Variations. Algorithmica, 1(2):251-266 1986.
    • (1986) Algorithmica , vol.1 , Issue.2 , pp. 251-266
    • Myers, E.W.1
  • 12
    • 84958554065 scopus 로고    scopus 로고
    • Efficient alignment discovery amongst noisy long reads
    • Wroclaw, Poland, Sept
    • E.W. Myers. Efficient Alignment Discovery amongst Noisy Long Reads. Proc. Workshop on Algorithms for BioInformatics (WABI), pp. 52-67, Wroclaw, Poland, Sept. 2014.
    • (2014) Proc. Workshop on Algorithms for BioInformatics (WABI) , pp. 52-67
    • Myers, E.W.1
  • 16
    • 0029312158 scopus 로고
    • Toward simplifying and accurately formulating fragment assembly
    • E.W. Myers. Toward Simplifying and Accurately Formulating Fragment Assembly. J. Comput. Biology, 2(2):275-290 1995.
    • (1995) J. Comput. Biology , vol.2 , Issue.2 , pp. 275-290
    • Myers, E.W.1
  • 17
    • 0029312687 scopus 로고
    • A new algorithm for DNA sequence assembly
    • R.M. Idury and M.S. Waterman. A new algorithm for DNA sequence assembly. J. Comput. Biology, 2(2):291-306 1995.
    • (1995) J. Comput. Biology , vol.2 , Issue.2 , pp. 291-306
    • Idury, R.M.1    Waterman, M.S.2
  • 19
    • 27544497879 scopus 로고    scopus 로고
    • The fragment assembly string graph
    • E.W. Myers. The Fragment Assembly String Graph. Bioinformatics, 21,Supp. 2:79-85 2005.
    • (2005) Bioinformatics , vol.21 , pp. 79-85
    • Myers, E.W.1
  • 20
    • 0035859921 scopus 로고    scopus 로고
    • An Eulerian path approach to DNA fragment assembly
    • P.A. Pevzner, H. Tang, and M.S. Waterman. An Eulerian path approach to DNA fragment assembly. Proc. Natil. Acad. Sci. USA, 98(17):9748-9753 2001.
    • (2001) Proc. Natil. Acad. Sci. USA , vol.98 , Issue.17 , pp. 9748-9753
    • Pevzner, P.A.1    Tang, H.2    Waterman, M.S.3
  • 23
    • 85055514780 scopus 로고    scopus 로고
    • SlopMap: A software application for quick and flexible identification of similar sequences using exact k-mer matching
    • I.Y. Zhbannikov, S.S. Hunter, M.L. Settles, and J.A. Foster. SlopMap: A software application for quick and flexible identification of similar sequences using exact k-mer matching. J. Data Mining, Genomics, and Proteomics, 4(3) doi:10.4172/2153-0602.1000133 2013.
    • J. Data Mining, Genomics, and Proteomics , vol.4 , Issue.3
    • Zhbannikov, I.Y.1    Hunter, S.S.2    Settles, M.L.3    Foster, J.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.