The role of information extraction in the design of a document triage applicationfor biocuration

2011 Workshop on Biomedical Natural Language Processing, BioNLP 2011 at the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies, ACL-HLT 2011 - Proceedings

Volumn , Issue , 2011, Pages 46-55

  Pokkunuri, Sandeep ^a   Ramakrishnan, Cartic ^b   Riloff, Ellen ^a   Hovy, Eduard ^b   Burns, Gully A P C ^b  

^a Department of Electrical and Computer Engineering   (United States)

^b UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLASSIFICATION (OF INFORMATION); INFORMATION RETRIEVAL; INFORMATION RETRIEVAL SYSTEMS; INFORMATION USE; MAMMALS; NATURAL LANGUAGE PROCESSING SYSTEMS; TEXT PROCESSING;

BAG-OF-WORDS MODELS; BIGRAMS; BIOCURATION; DOCUMENT TRIAGES; GENOME INFORMATICS; INFORMATION EXTRACTION TECHNIQUES; LEXICO-SYNTACTIC PATTERNS; LINGUISTIC FEATURES; MOUSE GENOME; TRI GRAMS;

SEMANTICS;

EID: 85083729693     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (17)

1. Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Stuart Roebuck, Richard Tobin, and Xinglong Wang. 2008. Assisted curation: does text mining really help? Pacific Symposium On Biocomputing, 567:556-567.
2. Nabila Bouatia-Naji, Amélie Bonnefond, Devin A Baerenwald, Marion Marchand, Marco Bugliani, Piero Marchetti, François Pattou, Richard L Printz, Brian P Flemming, Obi C Umunakwe, Nicholas L Conley, Martine Vaxillaire, Olivier Lantieri, Beverley Balkau, Michel Marre, Claire Lévy-Marchal, Paul Elliott, Marjo-Riitta Jarvelin, David Meyre, Christian Dina, James K Oeser, Philippe Froguel, and Richard M O'Brien. 2010. Genetic and functional assessment of the role of the rs13431652-A and rs573225-A alleles in the G6PC2 promoter that are strongly associated with elevated fasting glucose levels. Diabetes, 59(10):2662-2671.
3. Philip E Bourne and Johanna McEntyre. 2006. Biocurators: Contributors to the World of Science. PLoS Computational Biology, 2(10):1.
4. Aaron M Cohen and William R Hersh. 2006. The TREC 2004 genomics track categorization task: classifying full text biomedical documents. Journal of Biomedical Discovery and Collaboration, 1:4.
5. D Ferrucci and A Lally. 2004. Building an example application with the Unstructured Information Management Architecture. IBM Systems Journal, 43(3):455-475.
6. Yang J Bhupatiraju RT Roberts P M. Hearst M Hersh W, Cohen AM. 2005. TREC 2005 genomics track overview. In The Fourteenth Text Retrieval Conference.
7. Thorsten Joachims. 1999. Making Large-Scale SVM Learning Practical. Advances in Kernel Methods Support Vector Learning, pages 169-184.
8. T. McIntosh and J. Curran. 2009. Reducing Semantic Drift with Bagging and Distributional Similarity. In Proceedings of the 47th Annual Meeting of the Association for Computational Linguistics.
9. Tara McIntosh. 2010. Unsupervised discovery of negative categories in lexicon bootstrapping. In Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing, number October, pages 356-365. Association for Computational Linguistics.
10. Cartic Ramakrishnan, William A Baumgartner Jr, Judith A Blake, Gully A P C Burns, K Bretonnel Cohen, Harold Drabkin, Janan Eppig, Eduard Hovy, Chun-Nan Hsu, Lawrence E Hunter, Tommy Ingulfsen, Hiroaki Rocky Onda, Sandeep Pokkunuri, Ellen Riloff, and Karin Verspoor. 2010. Building the Scientific Knowledge Mine (SciKnowMine 1): a community- driven framework for text mining tools in direct service to biocuration. In proceeding of Workshop”New Challenges for NLP Frameworks” collocated with The seventh international conference on Language Resources and Evaluation (LREC) 2010.
11. E. Riloff and W. Lehnert. 1994. Information Extraction as a Basis for High-Precision Text Classification. ACM Transactions on Information Systems, 12(3):296-333, July.
12. E. Riloff and J. Lorenzen. 1999. Extraction-based text categorization: Generating domain-specific role relationships automatically. In Tomek Strzalkowski, editor, Natural Language Information Retrieval. Kluwer Academic Publishers.
13. E. Riloff and W. Phillips. 2004. An Introduction to the Sundance and AutoSlog Systems. Technical Report UUCS-04-015, School of Computing, University of Utah.
14. E. Riloff, J. Wiebe, and T. Wilson. 2003. Learning Subjective Nouns using Extraction Pattern Bootstrapping. In Proceedings of the Seventh Conference on Natural Language Learning (CoNLL-2003), pages 25-32.
15. E. Riloff. 1993. Automatically Constructing a Dictionary for Information Extraction Tasks. In Proceedings of the 11th National Conference on Artificial Intelligence.
16. Klara Sjögren, Marie Lagerquist, Sofia Moverare-Skrtic, Niklas Andersson, Sara H Windahl, Charlotte Swanson, Subburaman Mohan, Matti Poutanen, and Claes Ohlsson. 2009. Elevated aromatase expression in osteoblasts leads to increased bone mass without systemic adverse effects. Journal of bone and mineral research the official journal of the American Society for Bone and Mineral Research, 24(7):1263-1270.
17. M. Thelen and E. Riloff. 2002. A Bootstrapping Method for Learning Semantic Lexicons Using Extraction Pa ttern Contexts. In Proceedings of the 2002 Conference on Empirical Methods in Natural Language Processing, pages 214-221.