-
1
-
-
85059231393
-
Clinical metagenomic next-generation sequencing for pathogen detection
-
Gu W, Miller S, Chiu CY., Clinical metagenomic next-generation sequencing for pathogen detection. Annu Rev Pathol. 2019;14:319–338. doi: 10.1146/annurev-pathmechdis-012418-012751
-
(2019)
Annu Rev Pathol
, vol.14
, pp. 319-338
-
-
Gu, W.1
Miller, S.2
Chiu, C.Y.3
-
2
-
-
85032452649
-
Meta-transcriptomics and the evolutionary biology of RNA viruses
-
Shi M, Zhang YZ, Holmes EC., Meta-transcriptomics and the evolutionary biology of RNA viruses. Virus Res. 2018;243:83–90. doi: 10.1016/j.virusres.2017.10.016
-
(2018)
Virus Res
, vol.243
, pp. 83-90
-
-
Shi, M.1
Zhang, Y.Z.2
Holmes, E.C.3
-
3
-
-
85078834780
-
An emerging coronavirus causing pneumonia outbreak in Wuhan, China: calling for developing therapeutic and prophylactic strategies
-
Jiang S, Du L, Shi Z., An emerging coronavirus causing pneumonia outbreak in Wuhan, China: calling for developing therapeutic and prophylactic strategies. Emerg Microbes Infect. 2020;9:275–277. doi: 10.1080/22221751.2020.1723441
-
(2020)
Emerg Microbes Infect
, vol.9
, pp. 275-277
-
-
Jiang, S.1
Du, L.2
Shi, Z.3
-
4
-
-
84925021592
-
Fast and sensitive protein alignment using DIAMOND
-
Buchfink B, Xie C, Huson DH., Fast and sensitive protein alignment using DIAMOND. Nat Methods. 2015;12:59–60. doi: 10.1038/nmeth.3176
-
(2015)
Nat Methods
, vol.12
, pp. 59-60
-
-
Buchfink, B.1
Xie, C.2
Huson, D.H.3
-
5
-
-
84964994621
-
Metaphlan2 for enhanced metagenomic taxonomic profiling
-
Truong DT, Franzosa EA, Tickle TL, et al. Metaphlan2 for enhanced metagenomic taxonomic profiling. Nat Methods. 2015;12:902–903. doi: 10.1038/nmeth.3589
-
(2015)
Nat Methods
, vol.12
, pp. 902-903
-
-
Truong, D.T.1
Franzosa, E.A.2
Tickle, T.L.3
-
6
-
-
84929626808
-
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
-
Li D, Liu CM, Luo R, et al. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics. 2015;31:1674–1676. doi: 10.1093/bioinformatics/btv033
-
(2015)
Bioinformatics
, vol.31
, pp. 1674-1676
-
-
Li, D.1
Liu, C.M.2
Luo, R.3
-
7
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 2010;59:307–321. doi: 10.1093/sysbio/syq010
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
-
8
-
-
0032889281
-
Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
-
Lole KS, Bollinger RC, Paranjape RS, et al. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol. 1999;73:152–160. doi: 10.1128/JVI.73.1.152-160.1999
-
(1999)
J Virol
, vol.73
, pp. 152-160
-
-
Lole, K.S.1
Bollinger, R.C.2
Paranjape, R.S.3
-
9
-
-
85059231393
-
Clinical metagenomic next-generation sequencing for pathogen detection
-
Gu W, Miller S, Chiu CY., Clinical metagenomic next-generation sequencing for pathogen detection. Annu Rev Pathol. 2019;14:319–338. doi: 10.1146/annurev-pathmechdis-012418-012751
-
(2019)
Annu Rev Pathol
, vol.14
, pp. 319-338
-
-
Gu, W.1
Miller, S.2
Chiu, C.Y.3
-
10
-
-
85027354919
-
High-resolution metatranscriptomics reveals the ecological dynamics of mosquito-associated RNA viruses in Western Australia
-
Shi M, Neville P, Nicholson J, et al. High-resolution metatranscriptomics reveals the ecological dynamics of mosquito-associated RNA viruses in Western Australia. J Virol. 2017;91(17).
-
(2017)
J Virol
, vol.91
, Issue.17
-
-
Shi, M.1
Neville, P.2
Nicholson, J.3
-
11
-
-
85036566735
-
Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus
-
Hu B, Zeng LP, Yang XL, et al. Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus. PLoS Pathog. 2017;13:e1006698. doi: 10.1371/journal.ppat.1006698
-
(2017)
PLoS Pathog
, vol.13
, pp. e1006698
-
-
Hu, B.1
Zeng, L.P.2
Yang, X.L.3
-
12
-
-
84949623850
-
A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence
-
Menachery VD, Yount JrBL, Debbink K, et al. A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence. Nat Med. 2015;21:1508–1513. doi: 10.1038/nm.3985
-
(2015)
Nat Med
, vol.21
, pp. 1508-1513
-
-
Menachery, V.D.1
Yount, B.L.2
Debbink, K.3
-
13
-
-
85078500139
-
Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from patients with acute respiratory disease in Wuhan, Hubei, China
-
Chan JF, Kok KH, Zhu Z, et al. Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from patients with acute respiratory disease in Wuhan, Hubei, China. Emerg Microbes Infect. 2020;9:221–236. doi: 10.1080/22221751.2020.1719902
-
(2020)
Emerg Microbes Infect
, vol.9
, pp. 221-236
-
-
Chan, J.F.1
Kok, K.H.2
Zhu, Z.3
|