-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
3
-
-
84925021592
-
Fast and sensitive protein alignment using DIAMOND
-
Buchfink,B. et al. (2015) Fast and sensitive protein alignment using DIAMOND. Nat. Methods, 12, 59-60.
-
(2015)
Nat. Methods
, vol.12
, pp. 59-60
-
-
Buchfink, B.1
-
4
-
-
34548751162
-
Viroblast: A stand-alone blast web server for flexible queries of multiple databases and user's datasets
-
Deng,W. et al. (2007) Viroblast: a stand-alone blast web server for flexible queries of multiple databases and user's datasets. Bioinformatics, 23, 2334-2336.
-
(2007)
Bioinformatics
, vol.23
, pp. 2334-2336
-
-
Deng, W.1
-
5
-
-
79959931985
-
HMMER web server: Interactive sequence similarity searching
-
Finn,R.D. et al. (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res., 39, W29-W37.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. W29-W37
-
-
Finn, R.D.1
-
6
-
-
84891782659
-
Pfam: The protein families database
-
Finn,R.D. et al. (2014) Pfam: the protein families database. Nucleic Acids Res., 42, D222-D230.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
-
7
-
-
85016161203
-
Uniclust databases of clustered and deeply annotated protein sequences and alignments
-
Mirdita,M. et al. (2017) Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Res., 45, D170-D176.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D170-D176
-
-
Mirdita, M.1
-
8
-
-
84959252809
-
Sequenceserver: A modern graphical user interface for custom BLAST databases
-
Priyam, A. et al. (2015) Sequenceserver: a modern graphical user interface for custom BLAST databases. bioRxiv, 033142.
-
(2015)
BioRxiv
, pp. 033142
-
-
Priyam, A.1
-
9
-
-
85033571642
-
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
-
Steinegger,M. and Söding,J. (2017) MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nat. Biotechnol., 35, 1026-1028.
-
(2017)
Nat. Biotechnol.
, vol.35
, pp. 1026-1028
-
-
Steinegger, M.1
Söding, J.2
-
10
-
-
85088031133
-
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold
-
Steinegger,M. et al. (2018) Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. bioRxiv, 386110.
-
(2018)
BioRxiv, 386110
-
-
Steinegger, M.1
|