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Volumn 35, Issue 16, 2019, Pages 2856-2858

MMseqs2 desktop and local web server app for fast, interactive sequence searches

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; REACTION TIME; COMPUTER; FACTUAL DATABASE; SOFTWARE;

EID: 85071280607     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bty1057     Document Type: Article
Times cited : (316)

References (10)
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    • Altschul, S.F.1
  • 2
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    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
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  • 3
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    • Fast and sensitive protein alignment using DIAMOND
    • Buchfink,B. et al. (2015) Fast and sensitive protein alignment using DIAMOND. Nat. Methods, 12, 59-60.
    • (2015) Nat. Methods , vol.12 , pp. 59-60
    • Buchfink, B.1
  • 4
    • 34548751162 scopus 로고    scopus 로고
    • Viroblast: A stand-alone blast web server for flexible queries of multiple databases and user's datasets
    • Deng,W. et al. (2007) Viroblast: a stand-alone blast web server for flexible queries of multiple databases and user's datasets. Bioinformatics, 23, 2334-2336.
    • (2007) Bioinformatics , vol.23 , pp. 2334-2336
    • Deng, W.1
  • 5
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • Finn,R.D. et al. (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res., 39, W29-W37.
    • (2011) Nucleic Acids Res. , vol.39 , pp. W29-W37
    • Finn, R.D.1
  • 6
    • 84891782659 scopus 로고    scopus 로고
    • Pfam: The protein families database
    • Finn,R.D. et al. (2014) Pfam: the protein families database. Nucleic Acids Res., 42, D222-D230.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D222-D230
    • Finn, R.D.1
  • 7
    • 85016161203 scopus 로고    scopus 로고
    • Uniclust databases of clustered and deeply annotated protein sequences and alignments
    • Mirdita,M. et al. (2017) Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Res., 45, D170-D176.
    • (2017) Nucleic Acids Res. , vol.45 , pp. D170-D176
    • Mirdita, M.1
  • 8
    • 84959252809 scopus 로고    scopus 로고
    • Sequenceserver: A modern graphical user interface for custom BLAST databases
    • Priyam, A. et al. (2015) Sequenceserver: a modern graphical user interface for custom BLAST databases. bioRxiv, 033142.
    • (2015) BioRxiv , pp. 033142
    • Priyam, A.1
  • 9
    • 85033571642 scopus 로고    scopus 로고
    • MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
    • Steinegger,M. and Söding,J. (2017) MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nat. Biotechnol., 35, 1026-1028.
    • (2017) Nat. Biotechnol. , vol.35 , pp. 1026-1028
    • Steinegger, M.1    Söding, J.2
  • 10
    • 85088031133 scopus 로고    scopus 로고
    • Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold
    • Steinegger,M. et al. (2018) Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. bioRxiv, 386110.
    • (2018) BioRxiv, 386110
    • Steinegger, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.