Thalia: Semantic search engine for biomedical abstracts

Bioinformatics

Volumn 35, Issue 10, 2019, Pages 1799-1801

  Soto, Axel J ^a   Przybyła, Piotr ^a   Ananiadou, Sophia ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; HUMAN; INFORMATION RETRIEVAL; MEDLINE; PERSONALIZED MEDICINE; SEARCH ENGINE; SYSTEMATIC REVIEW; INTERNET; SEMANTICS;

INTERNET; PUBMED; SEARCH ENGINE; SEMANTICS;

EID: 85066160261     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bty871     Document Type: Article

References (18)

1. Batista-Navarro,R. et al. (2016) Argo: enabling the development of bespoke workflows and services for disease annotation. Database (Oxford), 2016, baw066.
2. Gonzalez,G.H. et al. (2016) Recent advances and emerging applications in text and data mining for biomedical discovery. Brief Bioinform., 17, 33-42.
3. Hoehndorf,R. et al. (2015) Aber-OWL: a framework for ontology-based data access in biology. BMC Bioinformatics, 16, 26.
4. Kolluru,B. et al. (2011) Using workflows to explore and optimise named entity recognition for chemistry. PLoS One, 6, e20181.
5. Lee,S. et al. (2016) BEST: next-generation biomedical entity search tool for knowledge discovery from biomedical literature. PLoS One, 11, e0164680.
6. Lu,Z. (2011) PubMed and beyond: a survey of web tools for searching biomedical literature. Database, 2011.
7. Müller,B. et al. (2017) LIVIVO-the vertical search engine for life sciences. Datenbank Spektrum, 17, 29-34.
8. NCBI Resource Coordinators (2017) Database resources of the national center for biotechnology information. Nucleic Acids Res, 45, D12.
9. Nobata,C. et al. (2011) Mining metabolites: extracting the yeast metabolome from the literature. Metabolomics, 7, 94-101.
10. Okazaki,N. et al. (2010) Building a high-quality sense inventory for improved abbreviation disambiguation. Bioinformatics, 26, 1246-1253.
11. Przybya,P. et al. (2017) Identifying personalised treatments and clinical trials for precision medicine using semantic search with Thalia. In: NIST Special Publication 500-324: The Twenty-Sixth Text REtrieval Conference Proceedings (TREC 2017).
12. Pyysalo,S. and Ananiadou,S. (2014) Anatomical entity mention recognition at literature scale. Bioinformatics, 30, 868-875.
13. Rak,R. et al. (2012) Argo: an integrative, interactive, text mining-based workbench supporting curation. Database (Oxford), 2012, bas010.
14. Rak,R. et al. (2014) Processing biological literature with customizable web services supporting interoperable formats. Database, 2014, bau064.
15. Roberts,K. et al. (2017) Overview of the TREC 2017 precision medicine track. In: NIST Special Publication 500-324: The Twenty-Sixth Text REtrieval Conference Proceedings (TREC 2017). Gaithersburg, MD, USA.
16. Thomas,P. et al. (2012) GeneView: a comprehensive semantic search engine for PubMed. Nucleic Acids Res., 40, W585-W591.
17. Wang,X. et al. (2010) Disambiguating the species of biomedical named entities using natural language parsers. Bioinformatics, 26, 661-667.
18. Wei,C.-H. et al. (2013) PubTator: a web-based text mining tool for assisting biocuration. Nucleic Acids Res., 41, W518-W522.