Domestication of the horse: Results based on microsatellite and mitochondrial DNA markers

Archives Animal Breeding

Volumn 47, Issue 6, 2004, Pages 517-535

  Aberle, K S ^a   Distl, O ^a  

^a UNIVERSITY OF VETERINARY MEDICINE HANNOVER   (Germany)

Author keywords

genetic diversity; horse; microsatellites; mitochondrial DNA

Indexed keywords

EID: 85063845615     PISSN: 00039438     EISSN: 23639822     Source Type: Journal    
DOI: 10.5194/aab-47-517-2004     Document Type: Article

References (63)

1. AQUADRO, C., GREENBERG, B.D.: Human mitochondrial DNA variation and evolution: Analysis of nucleotide sequences from seven individuals. Genetics 103 (1983), 287-312
2. BENIRSCHKE, K., MALOUF, N., LOW, R.J., HECK, H.: Chromosome complement: Differences between Equus caballus and Equus przewalskii, Poliakoff. Science 148 (1965), 382-383
3. BINNS, M., SWINEBURNE, J., BREEN, M.: Molecular genetics of the horse. In: The Genetics of the Horse. BOWLING, A.T., RUVINSKY, A. (Eds): (1999), pp. 109-118. Wallingford, UK: CABI Publishing
4. BJoRNSTAD, G., GUNBY, E., RoED, K.H.: Genetic structure of Norwegian horse breeds. J. Anim. Breed. Genet. 117 (2000), 307-317
5. BJoRNSTAD, G., NILSEN, o., RoED, K.H.: Genetic relationship between Mongolian and Norwegian horses Anim. Genet. 34 (2003), 55-58
6. BÖKÖNYI, S.: History of horse domestication. Animal Genetic Resources Information 6 (1987), 27-32
7. BOUMAN, I., BOUMAN, J.: The history of Przewalski's Horse. In: Przewalski's Horse-The history and biology of an endangered species.
8. BOYD L., HOUPT K.A. (Eds): (1994), 5-38. Albany, NY, USA: State University of New York Press
9. BOWER, B.: Ancient figurine lifts horses' profile. Science News 143 (1993), 22
10. BOWLING, A.T., DEL VALLE, A., BOWLING, M.: A pedigree-based study of mitochondrial D-loop DNA sequence variation among Arabian horses. Anim. Genet. 31 (2000), 1-7
11. BREEN, M., DOWNS, P., IRVIN, Z., BELL, K.: Intrageneric amplification of horse microsatellite markers with emphasis on the Przewalski's horse (E. przewalskii). Anim. Genet. 25 (1994), 401-405
12. CAÑON, J., CHECA, M.L., CARLEOS, C., VEGA-PLA, J.L., VALLEJO, M., DUNNER, S.: The genetic structure of Spanish Celtic horse breeds inferred from microsatellite data. Anim. Genet. 31 (2000), 39-48
13. CAVALLI-SFORZA L.L., EDWARDS A.W.F.: Phylogenetic analysis: Models and estimation procedures. Am. J. Hum. Genet. 19 (1967), 233-257.
14. CHECA, M.L., DUNNER, S., MARTIN, J.P., VEGA, J.L., CAÑON, J.: A note on the characterization of a small Celtic pony breed. J. Anim. Breed. Genet. 115 (1998), 157-163
15. CLUTTON-BROCK, J.: A natural history of domesticated mammals. Cambridge: Cambridge University Press (1999
16. CORNUET, J.M., PIRY, S., LUIKART, G., ESTOUP, A., SOLIGNAC, M.: New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153 (1999), 1989-2000
17. DIAMOND, J.: Evolution, consequences and future of plant and animal domestication. Nature 418 (2002), 700-707
18. DIERINGER, D., SCHLÖTTERER, C.: Microsatellite analyser (MSA): A platform independent analysis tool for large microsatellite data sets. Mol. Ecol. Not. 3 (2003), 167-169
19. DISTL, O., WREDE, J.: EAAP-Animal Genetic Data Bank (2002). Institut für Tierzucht und Vererbungsforschung, Tierärztliche Hochschule Hannover. http://www.tiho-hannover.de/einricht/zucht/eaap/index.htm.
20. EDING, J.H., LAVAL, G.: Measuring genetic uniqueness in livestock. In: Genebanks and the conservation of farm animal genetic resources. Oldenbroek, J.K. (Eds) (1999), 33-58.
21. DLO Institute for Animal Science and Health, Lelystad, The Netherlands
22. ELLEGREN, H., JOHANSSON, M., SANDEBRG, K., ANDERSSON, L.: Cloning of highly polymorphic microsatellites in the horse. Anim. Genet. 23 (1992), 133-142
23. FELSENSTEIN, J.: PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics 5 (1989), 164-166
24. FREY, O.: Baden-Württembergs Pferde. (1984), Stuttgart, Germany: Franckh'sche Verlagshandlung. GROVES, C.P.: Morphology, habitat, taxonomy. In Przewalski's horse-The history and biology of an endangered species.
25. BOYD L., HOUPT K.A. (Eds): (1994), 39-60. Albany, NY, USA: State University of New York Press
26. GOUDET, J.: FSTAT, Version 1.2, a computer program to calculate F-Statistics. J. Hered. 86 (1995), 485-486
27. GUO, S.W., THOMPSON, E.A.: Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics 48 (1992), 361-372
28. HILL E.W., BRADLEY, D.G., AL-BARODY, M., ERTUGRUL, O., SPLAN, R.K., ZAKHAROV, I., CUNNINGHAM, E.P.: History and integrity of thoroughbred dam lines revealed in equine mtDNA variation. Anim. Genet. 33 (2002), 287-294
29. HOLDER, M., LEWIS, P.: Phylogeny estimation: Traditional and bayesian approaches. Nat. Rev. 4 (2003), 275-284
30. HOLM, S.: A simple sequentially rejective multiple test procedure. Scand. J. Stat. 6 (1979), 65-75
31. ISHIDA, N., HASEGAWA, T., TAKEDA, K., SAKAGAMI, M., ONISHI, A., INUMARU, S., KOMATSU, M., MUKOYAMA, H.: Polymorphic sequence in the D-loop region of equine mitochondrial DNA. Anim. Genet. 25 (1994a), 215-221
32. ISHIDA, N., HIRANO, T., MUKOYAMA, H.: Detection of aberrant alleles in the D-loop region of equine mitochondrial DNA by single strand conformation polymorphism (SSCP) analysis. Anim. Genet. 25 (1994b), 287
33. ISHIDA, N., OYUNSUREN, T., MASHIMA, S., MUKOYAMA, H., SAITOU, N.: Mitochondrial DNA sequences of various species of the genus equus with special reference to the phylogenetic relationship between Przewalski's wild horse and domestic horse. J. Mol. Evol. 41 (1995), 180-188
34. ISHIDA, N., HASEGAWA, T., OYUNSUREN, T., MUKOYAMA, H.: PCR-RFLP analysis of the cytochrome b gene in horse mitochondrial DNA. Anim. Genet. 27 (1996), 359-363
35. JANSEN, T., FORSTER, P., LEVINE, M.A., OELKE, H., HURLES, M., RENFREW, C., WEBER, J., OLEK, K.: Mitochondrial DNA and the origins of the domestic horse. Proc. Nat. Acad. Sci. USA 99 (2002), 10905-10910
36. KARNBAUM, B.: Das Süddeutsche Kaltblut in Bayern. Kempten, Germany (1997): AVA Verlag Allgaü KAVAR, T., HABE, F., BREM, G., DOVC, P.: Mitochondrial D-loop sequence variation among the 16 maternal lines of the Lipizzan horse breed. Anim. Genet. 30, (1999), 423-430
37. KAVAR, T., BREM, G., HABE, F., SÖLKNER, J., DOVC, P.: History of Lipizzan horse maternal lines as revealed by mtDNA analysis. Gen. Sel. Evol. 34 (2002), 635-648
38. KELLY. L., POSTIGLIONI, A., DE ANDRÉS, D.F., VEGA-PLÁ, J.L., GAGLIARDI, R., BIAGETTI, R., FRANCO, J.: Genetic characterization of the Urugayan Creole horse and analysis of relationships among horse breeds. Res. Vet. Sci. 72 (2002), 69-73
39. KIM, K.-I., YANG, Y.-H., LEE, S.-S., PARK, C., MA, R., BOUZAT, J.L., LEWIN, H.A.: Phylogenetic relationships of Cheju horses to other horse breeds as determined by mtDNA D-loop sequence polymorphism. Anim. Genet. 30 (1999), 102-108
40. LISTER, A.M., KADWELL, M., KAAGAN, L.M., JORDAN, W.C., RICHARDS, M.B., STANLEY, H.F., Ancient and modern DNA in a study of horse domestication. Ancient Biomolecules 2 (1998), 267-280
41. LUÍS, C., BASTOS-SILVEIRA, C., COTHRAN, E.G., OOM, M.M. : Variation in the mitochondrial control region sequence between the two maternal lines of the Sorraia horse breed. Genet. Mol. Biol. 25 (2002), 309-311
42. MARKLUND, L., ELLEGREN, H., ERIKSSON, S., SANDBERG, K., ANDERSSON, L.: Parentage testing and linkage analysis in the horse using a set of highly polymorphic horse microsatellites. Anim. Genet. 25 (1994), 19-23
43. MARKLUND, S., CHAUDHARY, R., MARKLUND, L., SANDBERG, K., ANDERSSON, L. Extensive mtDNA diversity in horses revealed by PCR-SSCP analysis. Anim. Genet. 26 (1995), 193-196
44. NEI, M.: Analysis of gene diversity in subdivided populations. Proc. Nat. Acad. Sci. USA 70 (1973), 3321-3323
45. NISSEN, J.: Enzyklopädie der Pferderassen, Europa Band 1. Frankh-Kosmos Verlag, Stuttgart, Germany (1997
46. NISSEN, J.: Enzyklopädie der Pferderassen, Europa Band 2. Frankh-Kosmos Verlag, Stuttgart, Germany (1998
47. NISSEN, J.: Enzyklopädie der Pferderassen, Europa Band 3. Frankh-Kosmos Verlag, Stuttgart, Germany (1999
48. OAKENFULL E.A., RYDER, O.A.: Mitochondrial control region and 12 S rRNA variation in Przewalski's horse (Equus przewalskii). Anim. Genet. 29 (1998), 456-459
49. OOM, M.M., COTHRAN E.G.: The genetic variation of an endangered breed: The Sorraia horse. Anim. Genet. 27 (Suppl. 2) (1994), 35
50. OOM, M.M., LUÍS C.: Conservation genetics meeting, (2001) Lausanne, Switzerland
51. RAYMOND, M., ROUSSET, F.: GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism. J. Hered. 86 (1995), 248-249
52. RYDER, O.A., EPEL, N.C., BENIRSCHKE, K.: Chromosome banding studies of the equidae. Cytogenet. Cell Genet. 20 (1978), 323-350
53. RYDER, O.A.: Przewalski's horse: Prospects for reintroduction into the wild. Cons. Biol. 7 (1993), 13-15
54. SAMBRAUS, H.H.: Farbatlas Nutztierrassen. 6th edition, Verlag Eugen Ulmer, Stuttgart, Germany (2001)
55. SCHARNHÖLZ, R.: Kaltblutpferde. Starke-Pferde Verlag, Lemgo, Germany (2002
56. SHIUE, Y.-L., BICKEL, L.A., CAETANO, A.R., MILON, L.V., CLARK, R.S., EGGLESTON, M.L., MICHELMORE, R., BAILEY, E., GUERIN, G., GODARD, S., MICKELSON, J.R., VALBERG, S.J., MURRAY, J.D., BOWLING, A.T.: A synteny map of the horse genome comprised of 240 microsatellite and RAPD markers. Anim. Genet. 30 (1999), 1-9
57. SPONENBERG, D.P.: Genetic resources and their conservation. In: The Genetics of the Horse. BOWLING, A.T., RUVINSKY, A. (eds): (2000), 387-410, Wallingford, UK: CABI Publishing
58. VILÀ, C., LEONARD, J.A., GÖTHERSTRÖM, A., MARKLUND, S., SANDBERG, K., LIDÉN, K., WAYNE, R.K., ELLEGREN, H.: Widespread origins of domestic horse lineages. Science 291, (2001), 474-477
59. VOLF, J.: Das Urwildpferd: Equus przewalskii. pp. (1996), 47-49; 4th edition, Heidelberg, Germany: Spektrum Akademischer Verlag, (Die neue Brehm-Bücherei; Bd. 249
60. WANG, W., LIU, A., LIN, S., LAN, H., SU, B., XIE, D., SHI, L.: Multiple genotypes of mitochondrial DNA within a horse population from a small region in Yunnan province of China. Biochem. Genet. 32 (1994), 371-378
61. WEBER, M.: Stand und Weiterentwicklung der Schwarzwälder Kaltblutzucht in Baden-Württemberg zur Jahrhundertwende 2000/2001: Entwicklung der Kaltblutzucht seit 1947 bis heute. In: Festschrift zum 23. Tag des Schwarzwälder Pferdes. pp. (2001), 34-64 Titisee-Neustadt, Germany: Gemeinde St. Märgen, Druck & Papier Berenbold
62. Xu, X., ÁRNÁSON, Ú.: The complete mitochondrial DNA sequence of the horse, Equus caballus: Extensive heteroplasmy of the control region. Gene 148 (1994), 357-362
63. YANG, Y.H; KIM, K.I., COTHRAN, E.G., FLANNERY, A.R.: Genetic diversity of Cheju horses (equus caballus) determined by using mitochondrial DNA D-loop polymorphism. Biochem. Genet. 40 (2002), 175-186