-
1
-
-
85018752274
-
International cooperation to enable the diagnosis of all rare genetic diseases
-
COI: 1:CAS:528:DC%2BC2sXnt1Cmsrk%3D
-
Boycott KM, Rath A, Chong JX, et al. International cooperation to enable the diagnosis of all rare genetic diseases. Am J Hum Genet. 2017;100:695–705.
-
(2017)
Am J Hum Genet
, vol.100
, pp. 695-705
-
-
Boycott, K.M.1
Rath, A.2
Chong, J.X.3
-
2
-
-
85008395314
-
Resolution of disease phenotypes resulting from multilocus genomic variation
-
COI: 1:CAS:528:DC%2BC2sXhtlSnsLbL
-
Posey JE, Harel T, Liu P, et al. Resolution of disease phenotypes resulting from multilocus genomic variation. N Engl J Med. 2017;376:21–31.
-
(2017)
N Engl J Med
, vol.376
, pp. 21-31
-
-
Posey, J.E.1
Harel, T.2
Liu, P.3
-
3
-
-
84933279272
-
Factors influencing success of clinical genome sequencing across a broad spectrum of disorders
-
COI: 1:CAS:528:DC%2BC2MXhtFemt7vP
-
Taylor JC, Martin HC, Lise S, et al. Factors influencing success of clinical genome sequencing across a broad spectrum of disorders. Nat Genet. 2015;47:717–726.
-
(2015)
Nat Genet
, vol.47
, pp. 717-726
-
-
Taylor, J.C.1
Martin, H.C.2
Lise, S.3
-
4
-
-
84938965200
-
The genetic basis of Mendelian phenotypes: discoveries, challenges, and opportunities
-
COI: 1:CAS:528:DC%2BC2MXhtFCktbfJ
-
Chong JX, Buckingham KJ, Jhangiani SN, et al. The genetic basis of Mendelian phenotypes: discoveries, challenges, and opportunities. Am J Hum Genet. 2015;97:199–215.
-
(2015)
Am J Hum Genet
, vol.97
, pp. 199-215
-
-
Chong, J.X.1
Buckingham, K.J.2
Jhangiani, S.N.3
-
5
-
-
77955151784
-
MutationTaster evaluates disease-causing potential of sequence alterations
-
COI: 1:CAS:528:DC%2BC3cXpsFWksLo%3D
-
Schwarz JM, Rödelsperger C, Schuelke M, Seelow D. MutationTaster evaluates disease-causing potential of sequence alterations. Nat Methods. 2010;7:575–576.
-
(2010)
Nat Methods
, vol.7
, pp. 575-576
-
-
Schwarz, J.M.1
Rödelsperger, C.2
Schuelke, M.3
Seelow, D.4
-
6
-
-
84895858942
-
A general framework for estimating the relative pathogenicity of human genetic variants
-
COI: 1:CAS:528:DC%2BC2cXhs1Sjt7g%3D
-
Kircher M, Witten DM, Jain P, O’Roak BJ, Cooper GM, Shendure J. A general framework for estimating the relative pathogenicity of human genetic variants. Nat Genet. 2014;46:310–315.
-
(2014)
Nat Genet
, vol.46
, pp. 310-315
-
-
Kircher, M.1
Witten, D.M.2
Jain, P.3
O’Roak, B.J.4
Cooper, G.M.5
Shendure, J.6
-
7
-
-
84992389439
-
M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high sensitivity
-
COI: 1:CAS:528:DC%2BC28XhslehurjL
-
Jagadeesh KA, Wenger AM, Berger MJ, et al. M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high sensitivity. Nat Genet. 2016;48:1581–1586.
-
(2016)
Nat Genet
, vol.48
, pp. 1581-1586
-
-
Jagadeesh, K.A.1
Wenger, A.M.2
Berger, M.J.3
-
8
-
-
84991615407
-
REVEL: an ensemble method for predicting the pathogenicity of rare missense variants
-
COI: 1:CAS:528:DC%2BC28XhsFGrurnM
-
Ioannidis NM, Rothstein JH, Pejaver V, et al. REVEL: an ensemble method for predicting the pathogenicity of rare missense variants. Am J Hum Genet. 2016;99:877–885.
-
(2016)
Am J Hum Genet
, vol.99
, pp. 877-885
-
-
Ioannidis, N.M.1
Rothstein, J.H.2
Pejaver, V.3
-
9
-
-
84982253941
-
Analysis of protein-coding genetic variation in 60,706 humans
-
COI: 1:CAS:528:DC%2BC28XhtlOnsbbP
-
Lek M, Karczewski KJ, Minikel EV, et al. Analysis of protein-coding genetic variation in 60,706 humans. Nature. 2016;536:285–291.
-
(2016)
Nature
, vol.536
, pp. 285-291
-
-
Lek, M.1
Karczewski, K.J.2
Minikel, E.V.3
-
10
-
-
84887041034
-
eXtasy: variant prioritization by genomic data fusion
-
COI: 1:CAS:528:DC%2BC3sXhsFaktrvN
-
Sifrim A, Popovic D, Tranchevent L-C, et al. eXtasy: variant prioritization by genomic data fusion. Nat Methods. 2013;10:1083–1084.
-
(2013)
Nat Methods
, vol.10
, pp. 1083-1084
-
-
Sifrim, A.1
Popovic, D.2
Tranchevent, L.C.3
-
11
-
-
84892959492
-
Improved exome prioritization of disease genes through cross-species phenotype comparison
-
COI: 1:CAS:528:DC%2BC2cXisVKjsr8%3D
-
Robinson PN, Köhler S, Oellrich A, et al. Improved exome prioritization of disease genes through cross-species phenotype comparison. Genome Res. 2014;24:340–348.
-
(2014)
Genome Res
, vol.24
, pp. 340-348
-
-
Robinson, P.N.1
Köhler, S.2
Oellrich, A.3
-
12
-
-
84921633944
-
Phen-Gen: combining phenotype and genotype to analyze rare disorders
-
COI: 1:CAS:528:DC%2BC2cXht1KktrzK
-
Javed A, Agrawal S, Ng PC. Phen-Gen: combining phenotype and genotype to analyze rare disorders. Nat Methods. 2014;11:935–937.
-
(2014)
Nat Methods
, vol.11
, pp. 935-937
-
-
Javed, A.1
Agrawal, S.2
Ng, P.C.3
-
13
-
-
84928209346
-
Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology
-
Richards S, Aziz N, Bale S, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17:405–424.
-
(2015)
Genet Med
, vol.17
, pp. 405-424
-
-
Richards, S.1
Aziz, N.2
Bale, S.3
-
14
-
-
85016107847
-
Lessons learned from additional research analyses of unsolved clinical exome cases
-
Eldomery MK, Coban-Akdemir Z, Harel T, et al. Lessons learned from additional research analyses of unsolved clinical exome cases. Genome Med. 2017;9:26.
-
(2017)
Genome Med
, vol.9
-
-
Eldomery, M.K.1
Coban-Akdemir, Z.2
Harel, T.3
-
15
-
-
85031307052
-
A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data
-
COI: 1:CAS:528:DC%2BC2sXhtlyjtbzN
-
Stark Z, Dashnow H, Lunke S, et al. A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data. Eur J Hum Genet. 2017;25:1268–1272.
-
(2017)
Eur J Hum Genet
, vol.25
, pp. 1268-1272
-
-
Stark, Z.1
Dashnow, H.2
Lunke, S.3
-
16
-
-
0035470889
-
machine
-
Friedman JH Greedy function approximation: a gradient boosting machine. Ann Stat. 2001;29:1189–1232.
-
(2001)
The Annals of Statistics
, vol.29
, Issue.5
, pp. 1189-1232
-
-
Friedman, J.H.1
-
19
-
-
84923169896
-
Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research
-
Köhler S, Doelken SC, Ruef BJ, et al. Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research. F1000Res. 2013;2:30.
-
(2013)
F1000Res
, vol.2
, pp. 30
-
-
Köhler, S.1
Doelken, S.C.2
Ruef, B.J.3
-
20
-
-
0003033112
-
Using information content to evaluate semantic similarity in a taxonomy
-
IJCAI ’95. San Francisco, CA: Morgan Kaufmann Publishers
-
Resnik P. Using information content to evaluate semantic similarity in a taxonomy. In: Proceedings of the 14th International Joint Conference on Artificial Intelligence. Vol. 1. IJCAI ’95. San Francisco, CA: Morgan Kaufmann Publishers; 1995:448–453.
-
(1995)
Proceedings of the 14Th International Joint Conference on Artificial Intelligence
, vol.1
, pp. 448-453
-
-
Resnik, P.1
-
22
-
-
85087282802
-
Semantic similarity based on corpus statistics and lexical taxonomy
-
Taipei, Taiwan: The Association for Computational Linguistics and Chinese Language Processing (ACLCLP)
-
Jiang JJ, Conrath DW. Semantic similarity based on corpus statistics and lexical taxonomy. In: Proceedings of the 10th Research on Computational Linguistics International Conference. Taipei, Taiwan: The Association for Computational Linguistics and Chinese Language Processing (ACLCLP); 1997:19–33.
-
(1997)
Proceedings of the 10Th Research on Computational Linguistics International Conference
, pp. 19-33
-
-
Jiang, J.J.1
Conrath, D.W.2
-
23
-
-
34447294237
-
A new method to measure the semantic similarity of GO terms
-
COI: 1:CAS:528:DC%2BD2sXntVOjur8%3D
-
Wang JZ, Du Z, Payattakool R, Yu PS, Chen C-F. A new method to measure the semantic similarity of GO terms. Bioinformatics. 2007;23:1274–1281.
-
(2007)
Bioinformatics
, vol.23
, pp. 1274-1281
-
-
Wang, J.Z.1
Du, Z.2
Payattakool, R.3
Yu, P.S.4
Chen, C.F.5
-
24
-
-
84975063087
-
Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic efficiency
-
COI: 1:CAS:528:DC%2BC28XhtVWltbfO
-
Bone WP, Washington NL, Buske OJ, et al. Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic efficiency. Genet Med. 2016;18:608–617.
-
(2016)
Genet Med
, vol.18
, pp. 608-617
-
-
Bone, W.P.1
Washington, N.L.2
Buske, O.J.3
-
25
-
-
85029554726
-
Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria
-
Nykamp K, Anderson M, Powers M, et al. Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria. Genet Med. 2017;19:1105–1117.
-
(2017)
Genet Med
, vol.19
, pp. 1105-1117
-
-
Nykamp, K.1
Anderson, M.2
Powers, M.3
-
26
-
-
85016157374
-
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species
-
COI: 1:CAS:528:DC%2BC1cXhslWhsLk%3D
-
Mungall CJ, McMurry JA, Köhler S, et al. The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 2017;45(D1):D712–D722.
-
(2017)
Nucleic Acids Res
, vol.45
, Issue.D1
, pp. D712-D722
-
-
Mungall, C.J.1
McMurry, J.A.2
Köhler, S.3
-
27
-
-
85040454478
-
Knowledge base and mini-expert platform for the diagnosis of inborn errors of metabolism
-
Lee JJY, Wasserman WW, Hoffmann GF, van Karnebeek CDM, Blau N. Knowledge base and mini-expert platform for the diagnosis of inborn errors of metabolism. Genet Med. 2018;20:151–158.
-
(2018)
Genet Med
, vol.20
, pp. 151-158
-
-
Lee, J.J.Y.1
Wasserman, W.W.2
Hoffmann, G.F.3
van Karnebeek, C.D.M.4
Blau, N.5
-
28
-
-
84995732984
-
Whole genome sequencing expands diagnostic utility and improves clinical management in pediatric medicine
-
Stavropoulos DJ, Merico D, Jobling R, et al. Whole genome sequencing expands diagnostic utility and improves clinical management in pediatric medicine. NPJ Genomic Med. 2016;1:15012.
-
(2016)
NPJ Genomic Med
, vol.1
, pp. 15012
-
-
Stavropoulos, D.J.1
Merico, D.2
Jobling, R.3
-
29
-
-
85028664450
-
Successful application of whole genome sequencing in a medical genetics clinic
-
COI: 1:CAS:528:DC%2BC28XhvFKjur3P, PID: 28496993
-
Bick D, Fraser PC, Gutzeit MF, et al. Successful application of whole genome sequencing in a medical genetics clinic. J Pediatr Genet. 2017;6:61–76.
-
(2017)
J Pediatr Genet
, vol.6
, pp. 61-76
-
-
Bick, D.1
Fraser, P.C.2
Gutzeit, M.F.3
-
30
-
-
85002624508
-
A whole-genome analysis framework for effective identification of pathogenic regulatory variants in Mendelian disease
-
COI: 1:CAS:528:DC%2BC28XhsVWmtLrM
-
Smedley D, Schubach M, Jacobsen JOB, et al. A whole-genome analysis framework for effective identification of pathogenic regulatory variants in Mendelian disease. Am J Hum Genet. 2016;99:595–606.
-
(2016)
Am J Hum Genet
, vol.99
, pp. 595-606
-
-
Smedley, D.1
Schubach, M.2
Jacobsen, J.O.B.3
-
31
-
-
84956688641
-
A spectral approach integrating functional genomic annotations for coding and noncoding variants
-
COI: 1:CAS:528:DC%2BC28XhvFKnsA%3D%3D
-
Ionita-Laza I, McCallum K, Xu B, Buxbaum JD. A spectral approach integrating functional genomic annotations for coding and noncoding variants. Nat Genet. 2016;48:214–220.
-
(2016)
Nat Genet
, vol.48
, pp. 214-220
-
-
Ionita-Laza, I.1
McCallum, K.2
Xu, B.3
Buxbaum, J.D.4
-
32
-
-
85015007138
-
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data
-
COI: 1:CAS:528:DC%2BC2sXltVWgurk%3D
-
Huang Y-F, Gulko B, Siepel A. Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data. Nat Genet. 2017;49:618–624.
-
(2017)
Nat Genet
, vol.49
, pp. 618-624
-
-
Huang, Y.F.1
Gulko, B.2
Siepel, A.3
-
33
-
-
85021162442
-
Modeling gene regulation from paired expression and chromatin accessibility data
-
COI: 1:CAS:528:DC%2BC2sXpt1Wkurg%3D
-
Duren Z, Chen X, Jiang R, Wang Y, Wong WH. Modeling gene regulation from paired expression and chromatin accessibility data. Proc Natl Acad Sci USA 2017;114:E4914–E4923.
-
(2017)
Proc Natl Acad Sci U S A
, vol.114
, pp. E4914-E4923
-
-
Duren, Z.1
Chen, X.2
Jiang, R.3
Wang, Y.4
Wong, W.H.5
-
34
-
-
84923375031
-
Roadmap Epigenomics Consortium, Integrative analysis of 111 reference human epigenomes
-
Kundaje A, Meuleman W, et al. Roadmap Epigenomics Consortium, Integrative analysis of 111 reference human epigenomes. Nature. 2015;518:317–330.
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
Kundaje, A.1
Meuleman, W.2
|