The mouse Gene Expression Database (GXD): 2019 update

Nucleic Acids Research

Volumn 47, Issue D1, 2019, Pages D774-D779

  Smith, Constance M ^a   Hayamizu, Terry F ^a   Finger, Jacqueline H ^a   Bello, Susan M ^a   McCright, Ingeborg J ^a   Xu, Jingxia ^a   Baldarelli, Richard M ^a   Beal, Jonathan S ^a   Campbell, Jeffrey ^a   Corbani, Lori E ^a   Frost, Pete J ^a   Lewis, Jill R ^a   Giannatto, Sharon C ^a   Miers, Dave ^a   Shaw, David R ^a   Kadin, James A ^a   Richardson, Joel E ^a   Smith, Cynthia L ^a   Ringwald, Martin ^a  

^a JACKSON LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA; TRANSCRIPTOME;

ARTICLE; GENE; GENE EXPRESSION; GENE EXPRESSION DATABASE; GENETIC DATABASE; IMMUNOHISTOCHEMISTRY; IN SITU HYBRIDIZATION; MOUSE; MOUSE MUTANT; NONHUMAN; NORTHERN BLOTTING; PHENOTYPE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; WESTERN BLOTTING; ANIMAL; COMPUTER INTERFACE; GENETICS; GENOME; INTERNET;

ANIMALS; DATABASES, GENETIC; GENOME; INTERNET; MICE; TRANSCRIPTOME; USER-COMPUTER INTERFACE;

EID: 85059795487     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gky922     Document Type: Article

References (12)

1. Ringwald, M., Baldock, R., Bard, J., Kaufman, M., Eppig, J.T., Richardson, J.E., Nadeau, J.H. and Davidson, D. (1994) A database for mouse development. Science, 265, 2033-2034
2. Ringwald, M., Mangan, M.E., Eppig, J.T., Kadin, J.A., Richardson, J.E. and GXD: a gene expression database for the laboratory mouse. (1999) The gene expression database group. Nucleic Acids Res., 27, 106-112.
3. Smith, C.L., Blake, J.A., Kadin, J.A., Richardson, J.E., Bult, C.J. and the Mouse Genome Database Group. (2018) Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse. Nucleic Acids Res., 46, D836-D842.
4. Smith, C.M., Finger, J.H., Hayamizu, T.F., McCright, I.J., Xu, J., Eppig, J.T., Kadin, J.A., Richardson, J.E. and Ringwald, M. (2015) GXD: a community resource of mouse Gene Expression Data. Mamm. Genome, 26, 314-324.
5. Drabkin, H.J., Christie, K.R., Dolan, M.E., Hill, D.P., Ni, L., Sitnikov, D. and Blake, J.A. (2015) Application of comparative biology in GO functional annotation: the mouse model. Mamm. Genome, 26, 574-583.
6. Finger, J.H., Smith, C.M., Hayamizu, T.F., McCright, I.J., Xu, J., Eppig, J.T., Kadin, J.A., Richardson, J.E. and Ringwald, M. (2015) The mouse gene expression database: new features and how to use them effectively. Genesis, 53, 510-522.
7. Smith, C.M., Finger, J.H., Kadin, J.A., Richardson, J.E. and Ringwald, M. (2014) The gene expression database for mouse development (GXD): Putting developmental expression information at your fingertips. Dev. Dyn., 243, 1176-1186.
8. Finger, J.H., Smith, C.M., Hayamizu, T.F., McCright, I.J., Xu, J., Law, M., Shaw, D.R., Baldarelli, R.M., Beal, J.S., Blodgett, O. et al. (2017) The mouse Gene Expression Database (GXD): 2017 update. Nucleic Acids Res., 45, D730-D736.
9. Hayamizu, T.F., Baldock, R.A. and Ringwald, M. (2015) Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. Mamm. Genome, 26, 422-430.
10. Hayamizu, T.F., Wicks, M.N., Davidson, D.R., Burger, A., Ringwald, M. and Baldock, R.A. (2013) EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update. J. Biomed. Semantics, 4, 15.
11. Smith, C.L. and Eppig, J.T. (2012) The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. Mamm. Genome, 23, 653-668.
12. Haendel, M.A., Balhoff, J.P., Bastian, F.B., Blackburn, D.C., Blake, J.A., Bradford, Y., Comte, A., Dahdul, W.M., Dececchi, T.A., Druzinsky, R.E et al. (2014) Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. J. Biomed. Semantics, 5, 21.