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Volumn 19, Issue 1, 2018, Pages

Unlocking the novel genetic diversity and population structure of synthetic Hexaploid wheat

Author keywords

Aegilops tauschii; Bread wheat; D genome diversity; Genotype by sequencing; Single nucleotide polymorphism; Triticum turgidum

Indexed keywords

ARTICLE; CONTROLLED STUDY; CULTIVAR; GENE MUTATION; GENETIC ASSOCIATION; GENETIC IMPROVEMENT; GENETIC MARKER; GENETIC VARIABILITY; GENETIC VARIATION; GERMPLASM; HEXAPLOIDY; HUMAN; NONHUMAN; PLANT DEVELOPMENT; POPULATION DIFFERENTIATION; POPULATION STRUCTURE; SINGLE NUCLEOTIDE POLYMORPHISM; SPRING; SUBSPECIES; TRITICUM AESTIVUM; TRITICUM TURGIDUM; WINTER; CHROMOSOMAL MAPPING; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; PLANT BREEDING; POLYPLOIDY; POPULATION GENETICS; PROCEDURES; WHEAT;

EID: 85054507146     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-018-4969-2     Document Type: Article
Times cited : (54)

References (39)
  • 1
    • 85032955832 scopus 로고    scopus 로고
    • Genotype, environment, seeding rate, and top-dressed nitrogen effects on end-use quality of modern Nebraska winter wheat
    • Bhatta M, Regassa T, Rose DJ, Baenziger PS, Eskridge KM, Santra DK, et al. Genotype, environment, seeding rate, and top-dressed nitrogen effects on end-use quality of modern Nebraska winter wheat. J Sci Food Agric. 2017;97:5311-8.
    • (2017) J Sci Food Agric , vol.97 , pp. 5311-5318
    • Bhatta, M.1    Regassa, T.2    Rose, D.J.3    Baenziger, P.S.4    Eskridge, K.M.5    Santra, D.K.6
  • 3
    • 34347399464 scopus 로고    scopus 로고
    • Genome plasticity a key factor in the success of polyploid wheat under domestication
    • Dubcovsky J, Dvorak J. Genome plasticity a key factor in the success of polyploid wheat under domestication. Science. 2007;316:1862-6.
    • (2007) Science , vol.316 , pp. 1862-1866
    • Dubcovsky, J.1    Dvorak, J.2
  • 4
    • 0001071919 scopus 로고    scopus 로고
    • Deepening the wheat gene pool
    • Cox T. Deepening the wheat gene pool. J Crop Prod. 1997;1:145-68.
    • (1997) J Crop Prod , vol.1 , pp. 145-168
    • Cox, T.1
  • 5
    • 0346936108 scopus 로고    scopus 로고
    • Assessment of genetic diversity in synthetic hexaploid wheats and their Triticum dicoccum and Aegilops tauschii parents using AFLPs and agronomic traits
    • Lage J, Warburton ML, Crossa J, Skovmand B, Andersen SB. Assessment of genetic diversity in synthetic hexaploid wheats and their Triticum dicoccum and Aegilops tauschii parents using AFLPs and agronomic traits. Euphytica. 2003;134:305-17.
    • (2003) Euphytica , vol.134 , pp. 305-317
    • Lage, J.1    Warburton, M.L.2    Crossa, J.3    Skovmand, B.4    Andersen, S.B.5
  • 6
    • 15044364599 scopus 로고    scopus 로고
    • Quantifying novel sequence variation and selective advantage in synthetic hexaploid wheats and their backcross-derived lines using SSR markers
    • Zhang P, Dreisigacker S, Melchinger AE, Reif JC, Mujeeb Kazi A, Van Ginkel M, et al. Quantifying novel sequence variation and selective advantage in synthetic hexaploid wheats and their backcross-derived lines using SSR markers. Mol Breed. 2005;15:1-10.
    • (2005) Mol Breed , vol.15 , pp. 1-10
    • Zhang, P.1    Dreisigacker, S.2    Melchinger, A.E.3    Reif, J.C.4    Mujeeb Kazi, A.5    Van Ginkel, M.6
  • 7
    • 43549088343 scopus 로고    scopus 로고
    • Use of synthetic hexaploid wheat to increase diversity for CIMMYT bread wheat improvement
    • Dreisigacker S, Kishii M, Lage J, Warburton M. Use of synthetic hexaploid wheat to increase diversity for CIMMYT bread wheat improvement. Aust J Agric Res. 2008;59:413-20.
    • (2008) Aust J Agric Res , vol.59 , pp. 413-420
    • Dreisigacker, S.1    Kishii, M.2    Lage, J.3    Warburton, M.4
  • 9
    • 84930867764 scopus 로고    scopus 로고
    • Genome-wide association mapping for seedling and adult plant resistance to stripe rust in synthetic hexaploid wheat
    • Zegeye H, Rasheed A, Makdis F, Badebo A, Ogbonnaya FC. Genome-wide association mapping for seedling and adult plant resistance to stripe rust in synthetic hexaploid wheat. PLoS One. 2014;9(8):e10559.
    • (2014) PLoS One , vol.9 , Issue.8
    • Zegeye, H.1    Rasheed, A.2    Makdis, F.3    Badebo, A.4    Ogbonnaya, F.C.5
  • 10
    • 84941361239 scopus 로고    scopus 로고
    • Genetic diversity among synthetic hexaploid wheat accessions (Triticum aestivum) with resistance to several fungal diseases
    • Das MK, Bai G, Mujeeb-Kazi A, Rajaram S. Genetic diversity among synthetic hexaploid wheat accessions (Triticum aestivum) with resistance to several fungal diseases. Genet Resour Crop Evol. 2016;63:1285-96.
    • (2016) Genet Resour Crop Evol , vol.63 , pp. 1285-1296
    • Das, M.K.1    Bai, G.2    Mujeeb-Kazi, A.3    Rajaram, S.4
  • 11
  • 13
    • 85029052126 scopus 로고    scopus 로고
    • Genotyping-by-sequencing (gbs) revealed molecular genetic diversity of iranian wheat landraces and cultivars
    • Alipour H, Bihamta MR, Mohammadi V, Peyghambari SA, Bai G, Zhang G. Genotyping-by-sequencing (gbs) revealed molecular genetic diversity of iranian wheat landraces and cultivars. Front Plant Sci. 2017;8:1293.
    • (2017) Front Plant Sci , vol.8 , pp. 1293
    • Alipour, H.1    Bihamta, M.R.2    Mohammadi, V.3    Peyghambari, S.A.4    Bai, G.5    Zhang, G.6
  • 14
    • 84899851328 scopus 로고    scopus 로고
    • Genome-wide marker development for the wheat D genome based on single nucleotide polymorphisms identified from transcripts in the wild wheat progenitor Aegilops tauschii
    • Iehisa JCM, Shimizu A, Sato K, Nishijima R, Sakaguchi K, Matsuda R, et al. Genome-wide marker development for the wheat D genome based on single nucleotide polymorphisms identified from transcripts in the wild wheat progenitor Aegilops tauschii. Theor Appl Genet. 2014;127:261-71.
    • (2014) Theor Appl Genet , vol.127 , pp. 261-271
    • Iehisa, J.C.M.1    Shimizu, A.2    Sato, K.3    Nishijima, R.4    Sakaguchi, K.5    Matsuda, R.6
  • 15
    • 84875633402 scopus 로고    scopus 로고
    • Discovery and development of exome-based, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.)
    • Allen AM, Barker GLA, Wilkinson P, Burridge A, Winfield M, Coghill J, et al. Discovery and development of exome-based, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.). Plant Biotechnol. J. 2013;11:279-95.
    • (2013) Plant Biotechnol. J , vol.11 , pp. 279-295
    • Allen, A.M.1    Barker, G.L.A.2    Wilkinson, P.3    Burridge, A.4    Winfield, M.5    Coghill, J.6
  • 16
    • 84877851614 scopus 로고    scopus 로고
    • Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars
    • Cavanagh CR, Chao S, Wang S, Huang BE, Stephen S, Kiani S, et al. Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc Natl Acad Sci. 2013;110:8057-62.
    • (2013) Proc Natl Acad Sci , vol.110 , pp. 8057-8062
    • Cavanagh, C.R.1    Chao, S.2    Wang, S.3    Huang, B.E.4    Stephen, S.5    Kiani, S.6
  • 17
    • 84857520461 scopus 로고    scopus 로고
    • Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by- sequencing approach
    • Poland JA, Brown PJ, Sorrells ME, Jannink J. Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by- sequencing approach. PLoS One. 2012;7(2):e32253.
    • (2012) PLoS One , vol.7 , Issue.2
    • Poland, J.A.1    Brown, P.J.2    Sorrells, M.E.3    Jannink, J.4
  • 19
    • 33845537967 scopus 로고    scopus 로고
    • Using the AMOVA framework to estimate a standardized genetic differentiation measure
    • Meirmans PG. Using the AMOVA framework to estimate a standardized genetic differentiation measure. Evolution. 2006;60:2399-402.
    • (2006) Evolution , vol.60 , pp. 2399-2402
    • Meirmans, P.G.1
  • 20
    • 0018147653 scopus 로고
    • Estimation of average heterozygosity and genetic distance from a small number of individuals
    • Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics. 1978:583-90.
    • (1978) Genetics , pp. 583-590
    • Nei, M.1
  • 21
    • 51649095312 scopus 로고    scopus 로고
    • GST and its relatives do not measure differentiation
    • Jost L. GST and its relatives do not measure differentiation. Mol Ecol. 2008;17:4015-26.
    • (2008) Mol Ecol , vol.17 , pp. 4015-4026
    • Jost, L.1
  • 22
    • 9644266571 scopus 로고    scopus 로고
    • GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms
    • Meirmans PG, Van Tienderen PH. GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms. Mol Ecol Notes. 2004;4:792-4.
    • (2004) Mol Ecol Notes , vol.4 , pp. 792-794
    • Meirmans, P.G.1    Van Tienderen, P.H.2
  • 23
    • 0014494672 scopus 로고
    • The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations
    • Kimura M. The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations. Genetics. 1969;61:893-903.
    • (1969) Genetics , vol.61 , pp. 893-903
    • Kimura, M.1
  • 24
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 1989;123:585-95.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 26
    • 85054929630 scopus 로고    scopus 로고
    • FigTree v1.4.3. Mol. Evol. phylogenetics Epidemiol Accessed 10 Jan 2018
    • Rambaut A. FigTree v1.4.3. Mol. Evol. phylogenetics Epidemiol. 2016. Available from: http://tree.bio.ed.ac.uk/software/figtree/. Accessed 10 Jan 2018.
    • (2016)
    • Rambaut, A.1
  • 27
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and windows
    • Excoffier L, Lischer HEL. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and windows. Mol. Ecol. Resour. 2010;10:564-7.
    • (2010) Mol. Ecol. Resour , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 28
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155:945-59.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 29
    • 85016144681 scopus 로고    scopus 로고
    • StrAuto: automation and parallelization of STRUCTURE analysis
    • Chhatre VE, Emerson KJ. StrAuto: automation and parallelization of STRUCTURE analysis. BMC Bioinformatics. 2017;18(1):192.
    • (2017) BMC Bioinformatics , vol.18 , Issue.1 , pp. 192
    • Chhatre, V.E.1    Emerson, K.J.2
  • 30
    • 84882759440 scopus 로고    scopus 로고
    • STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
    • Earl DA, vonHoldt BM. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 2012;4:359-61.
    • (2012) Conserv. Genet. Resour , vol.4 , pp. 359-361
    • Earl, D.A.1    vonHoldt, B.M.2
  • 31
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
    • Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005;14:2611-20.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 32
    • 84883199029 scopus 로고    scopus 로고
    • Shrinkage estimation of the realized relationship matrix. G3:genes, genomes
    • Endelman JB, Jannink J-L. Shrinkage estimation of the realized relationship matrix. G3:genes, genomes. Genetics. 2012;2:1405-13.
    • (2012) Genetics , vol.2 , pp. 1405-1413
    • Endelman, J.B.1    Jannink, J.-L.2
  • 33
    • 84890417804 scopus 로고
    • The genetical structure of natural populations
    • Wright S. The genetical structure of natural populations. Ann Eugenics. 1951;15:323-54.
    • (1951) Ann Eugenics , vol.15 , pp. 323-354
    • Wright, S.1
  • 34
    • 24644446846 scopus 로고    scopus 로고
    • A standardized genetic differentiation measure
    • Hedrick PW. A standardized genetic differentiation measure. Evolution. 2005;59:1633-8.
    • (2005) Evolution , vol.59 , pp. 1633-1638
    • Hedrick, P.W.1
  • 35
    • 33745965482 scopus 로고    scopus 로고
    • Bringing wild relatives back into the family: recovering genetic diversity in CIMMYT improved wheat germplasm
    • Warburton ML, Crossa J, Franco J, Kazi M, Trethowan R, Rajaram S, et al. Bringing wild relatives back into the family: recovering genetic diversity in CIMMYT improved wheat germplasm. Euphytica. 2006;149:289-301.
    • (2006) Euphytica , vol.149 , pp. 289-301
    • Warburton, M.L.1    Crossa, J.2    Franco, J.3    Kazi, M.4    Trethowan, R.5    Rajaram, S.6
  • 36
    • 84946096325 scopus 로고    scopus 로고
    • Genome-wide association study of 29 morphological traits in Aegilops tauschii
    • Liu Y, Wang L, Mao S, Liu K, Lu Y, Wang J, et al. Genome-wide association study of 29 morphological traits in Aegilops tauschii. Sci Rep. 2015;5:15562.
    • (2015) Sci Rep , vol.5 , pp. 15562
    • Liu, Y.1    Wang, L.2    Mao, S.3    Liu, K.4    Lu, Y.5    Wang, J.6
  • 37
    • 84876413103 scopus 로고    scopus 로고
    • Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat
    • Wang J, Luo MC, Chen Z, You FM, Wei Y, Zheng Y, et al. Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat. New Phytol. 2013;198:925-37.
    • (2013) New Phytol , vol.198 , pp. 925-937
    • Wang, J.1    Luo, M.C.2    Chen, Z.3    You, F.M.4    Wei, Y.5    Zheng, Y.6
  • 38
    • 84921810497 scopus 로고    scopus 로고
    • Analysis of genetic diversity in synthetic wheat assemblage (T. Turgidum x Aegilops tauschii; 2n=6x=42; AABBDD) for winter wheat breeding
    • Hanif U, Rasheed A, Kazi AG, Afzal F, Khalid M, Munir M, et al. Analysis of genetic diversity in synthetic wheat assemblage (T. Turgidum x Aegilops tauschii; 2n=6x=42; AABBDD) for winter wheat breeding. Cytologia. 2014;79:485-500.
    • (2014) Cytologia , vol.79 , pp. 485-500
    • Hanif, U.1    Rasheed, A.2    Kazi, A.G.3    Afzal, F.4    Khalid, M.5    Munir, M.6


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