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Volumn 4, Issue 2, 2013, Pages

Selective constraint and the evolution of the RNA polymerase II C-Terminal domain

Author keywords

CTD; dN dS; Eukaryote evolution; Purifying selection; RNA POLYMERASE II; Selective constraint

Indexed keywords

PROLINE; RNA POLYMERASE II; SERINE;

EID: 85052430032     PISSN: 21541264     EISSN: 21541272     Source Type: Journal    
DOI: 10.4161/trns.23305     Document Type: Article
Times cited : (10)

References (22)
  • 1
    • 0027306799 scopus 로고
    • Genetics of eukaryotic RNA polymerases I, II, and III
    • PMID:8246845
    • Archambault J, Friesen JD. Genetics of eukaryotic RNA polymerases I, II, and III. Microbiol Rev 1993; 57:703-24; PMID:8246845.
    • (1993) Microbiol Rev , vol.57 , pp. 703-724
    • Archambault, J.1    Friesen, J.D.2
  • 2
    • 0035827346 scopus 로고    scopus 로고
    • Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
    • PMID:11313498 http://dx.doi.org/10.1126/sci-ence.1059493
    • Cramer P, Bushnell DA, Kornberg RD. Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001; 292:1863-76; PMID:11313498; http://dx.doi.org/10.1126/sci-ence.1059493.
    • (2001) Science , vol.292 , pp. 1863-1876
    • Cramer, P.1    Bushnell, D.A.2    Kornberg, R.D.3
  • 3
    • 0022132080 scopus 로고
    • Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases
    • PMID:3896517 http://dx.doi.org/10.1016/0092-8674(85)90117-5
    • Allison LA, Moyle M, Shales M, Ingles CJ. Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases. Cell 1985; 42:599-610; PMID:3896517; http://dx.doi.org/10.1016/0092-8674(85)90117-5.
    • (1985) Cell , vol.42 , pp. 599-610
    • Allison, L.A.1    Moyle, M.2    Shales, M.3    Ingles, C.J.4
  • 4
    • 0009370184 scopus 로고
    • A unique structure at the carboxyl terminus of the largest subunit of eukaryotic RNA polymerase II
    • PMID:2999785 http://dx.doi.org/10.1073/pnas.82.23.7934
    • Corden JL, Cadena DL, Ahearn JM Jr., Dahmus ME. A unique structure at the carboxyl terminus of the largest subunit of eukaryotic RNA polymerase II. Proc Natl Acad Sci U S A 1985; 82:7934-8; PMID:2999785; http://dx.doi.org/10.1073/pnas.82.23.7934.
    • (1985) Proc Natl Acad Sci U S A , vol.82 , pp. 7934-7938
    • Corden, J.L.1    Cadena, D.L.2    Ahearn Jr., J.M.3    Dahmus, M.E.4
  • 5
    • 0037197839 scopus 로고    scopus 로고
    • Evolution of the RNA polymerase II C-terminal domain
    • PMID:11972039 http://dx.doi.org/10.1073/pnas.082646199
    • Stiller JW, Hall BD. Evolution of the RNA polymerase II C-terminal domain. Proc Natl Acad Sci U S A 2002; 99:6091-6; PMID:11972039; http://dx.doi.org/10.1073/pnas.082646199.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 6091-6096
    • Stiller, J.W.1    Hall, B.D.2
  • 6
    • 84869014886 scopus 로고    scopus 로고
    • Updating the CTD story: From tail to epic
    • PMID: 22567360 http://dx.doi.org/10.4061/2011/623718
    • Bartkowiak B, Mackellar AL, Greenleaf AL. Updating the CTD story: From tail to epic. Genet Res Int 2011; 2011:623718; PMID: 22567360; http://dx.doi.org/10.4061/2011/623718.
    • (2011) Genet Res Int , pp. 623718
    • Bartkowiak, B.1    Mackellar, A.L.2    Greenleaf, A.L.3
  • 8
    • 70449641057 scopus 로고    scopus 로고
    • Progression through the RNA polymerase II CTD cycle
    • PMID:19941815 http://dx.doi.org/10.1016/j.mol-cel.2009.10.019
    • Buratowski S. Progression through the RNA polymerase II CTD cycle. Mol Cell 2009; 36:541-6; PMID:19941815; http://dx.doi.org/10.1016/j.mol-cel.2009.10.019.
    • (2009) Mol Cell , vol.36 , pp. 541-546
    • Buratowski, S.1
  • 9
    • 0023807922 scopus 로고
    • The C-terminal domain of the largest subunit of RNA polymerase II of Saccharomyces cerevisiae, Drosophila melanogaster, and mammals: A conserved structure with an essential function
    • PMID:3122024
    • Allison LA, Wong JK, Fitzpatrick VD, Moyle M, Ingles CJ. The C-terminal domain of the largest subunit of RNA polymerase II of Saccharomyces cerevisiae, Drosophila melanogaster, and mammals: a conserved structure with an essential function. Mol Cell Biol 1988; 8:321-9; PMID:3122024.
    • (1988) Mol Cell Biol , vol.8 , pp. 321-329
    • Allison, L.A.1    Wong, J.K.2    Fitzpatrick, V.D.3    Moyle, M.4    Ingles, C.J.5
  • 10
    • 77958150026 scopus 로고    scopus 로고
    • Genetic organization, length conservation, and evolution of RNA polymerase II carboxyl-terminal domain
    • PMID:20558594 http://dx.doi.org/10.1093/molbev/msq151
    • Liu P, Kenney JM, Stiller JW, Greenleaf AL. Genetic organization, length conservation, and evolution of RNA polymerase II carboxyl-terminal domain. Mol Biol Evol 2010; 27:2628-41; PMID:20558594; http://dx.doi.org/10.1093/molbev/msq151.
    • (2010) Mol Biol Evol , vol.27 , pp. 2628-2641
    • Liu, P.1    Kenney, J.M.2    Stiller, J.W.3    Greenleaf, A.L.4
  • 11
    • 0036269480 scopus 로고    scopus 로고
    • Analyses of RNA Polymerase II genes from free-living protists: Phylogeny, long branch attraction, and the eukaryotic big bang
    • PMID:12032239 http://dx.doi.org/10.1093/oxfordjournals.molbev.a004140
    • Dacks JB, Marinets A, Ford Doolittle W, Cavalier-Smith T, Logsdon JM Jr. Analyses of RNA Polymerase II genes from free-living protists: phylogeny, long branch attraction, and the eukaryotic big bang. Mol Biol Evol 2002; 19:830-40; PMID:12032239; http://dx.doi.org/10.1093/oxfordjournals.molbev.a004140.
    • (2002) Mol Biol Evol , vol.19 , pp. 830-840
    • Dacks, J.B.1    Marinets, A.2    Ford, D.W.3    Cavalier-Smith, T.4    Logsdon Jr., J.M.5
  • 12
    • 38049150492 scopus 로고    scopus 로고
    • Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function
    • PMID:18077423 http://dx.doi.org/10.1073/pnas.0707419104
    • Lane CE, van den Heuvel K, Kozera C, Curtis BA, Parsons BJ, Bowman S, et al. Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function. Proc Natl Acad Sci U S A 2007; 104:19908-13; PMID:18077423; http://dx.doi.org/10.1073/pnas.0707419104.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 19908-19913
    • Lane, C.E.1    van den Heuvel, K.2    Kozera, C.3    Curtis, B.A.4    Parsons, B.J.5    Bowman, S.6
  • 13
    • 44149094965 scopus 로고    scopus 로고
    • Molecular evolution of the RNA polymerase II CTD
    • PMID:18472177 http://dx.doi.org/10.1016/j.tig.2008.03.010
    • Chapman RD, Heidemann M, Hintermair C, Eick D. Molecular evolution of the RNA polymerase II CTD. Trends Genet 2008; 24:289-96; PMID:18472177; http://dx.doi.org/10.1016/j.tig.2008.03.010.
    • (2008) Trends Genet , vol.24 , pp. 289-296
    • Chapman, R.D.1    Heidemann, M.2    Hintermair, C.3    Eick, D.4
  • 14
    • 70349136312 scopus 로고    scopus 로고
    • The non-canonical CTD of RNAP-II is essential for productive RNA synthesis in Trypanosoma brucei
    • PMID:19742309 http://dx.doi.org/10.1371/journal.pone.0006959
    • Das A, Bellofatto V. The non-canonical CTD of RNAP-II is essential for productive RNA synthesis in Trypanosoma brucei. PLoS One 2009; 4:e6959; PMID:19742309; http://dx.doi.org/10.1371/journal.pone.0006959
    • (2009) PLoS One , vol.4
    • Das, A.1    Bellofatto, V.2
  • 15
    • 0032935835 scopus 로고    scopus 로고
    • Synonymous rates at the RpII215 gene of Drosophila: Variation among species and across the coding region
    • PMID:10224259
    • Llopart A, Aguadé M. Synonymous rates at the RpII215 gene of Drosophila: variation among species and across the coding region. Genetics 1999; 152:269-80; PMID:10224259
    • (1999) Genetics , vol.152 , pp. 269-280
    • Llopart, A.1    Aguadé, M.2
  • 16
    • 33745476746 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the chlorarachniophyte nucleomorph: Nature's smallest nucleus
    • PMID:16760254 http://dx.doi.org/10.1073/pnas.0600707103
    • Gilson PR, Su V, Slamovits CH, Reith ME, Keeling PJ, McFadden GI. Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus. Proc Natl Acad Sci U S A 2006; 103:9566-71; PMID:16760254; http://dx.doi.org/10.1073/pnas.0600707103.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 9566-9571
    • Gilson, P.R.1    Su, V.2    Slamovits, C.H.3    Reith, M.E.4    Keeling, P.J.5    McFadden, G.I.6
  • 17
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • PMID:15034147 http://dx.doi.org/10.1093/nar/gkh340
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32:1792-7; PMID:15034147; http://dx.doi.org/10.1093/nar/gkh340.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 18
    • 48249102000 scopus 로고    scopus 로고
    • Phylogeny.fr: Robust phylogenetic analysis for the non-specialist
    • Web Server issue PMID:18424797 http://dx.doi.org/10.1093/nar/gkn180
    • Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, et al. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 2008; 36(Web Server issue):W465-9; PMID:18424797; http://dx.doi.org/10.1093/nar/gkn180.
    • (2008) Nucleic Acids Res , vol.36
    • Dereeper, A.1    Guignon, V.2    Blanc, G.3    Audic, S.4    Buffet, S.5    Chevenet, F.6
  • 19
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • PMID:10742046 http://dx.doi.org/10.1093/oxfordjournals.molbev.a026334
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000; 17:540-52; PMID:10742046; http://dx.doi.org/10.1093/oxfordjournals.molbev.a026334.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 20
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • PMID:15647292 http://dx.doi.org/10.1093/bioinformatics/bti263
    • Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005; 21:2104-5; PMID:15647292; http://dx.doi.org/10.1093/bioinformatics/bti263.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 21
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree Of Life v2: Online annotation and display of phylogenetic trees made easy
    • Web Server issue PMID:21470960 http://dx.doi.org/10.1093/nar/gkr201
    • Letunic I, Bork P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 2011; 39(Web Server issue):W475-8; PMID:21470960; http://dx.doi.org/10.1093/nar/gkr201.
    • (2011) Nucleic Acids Res , vol.39
    • Letunic, I.1    Bork, P.2
  • 22
    • 0036134765 scopus 로고    scopus 로고
    • Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes
    • PMID:11752189 http://dx.doi.org/10.1093/oxfordjournals.molbev.a003981
    • Yang Z, Swanson WJ. Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes. Mol Biol Evol 2002; 19:49-57; PMID:11752189; http://dx.doi.org/10.1093/oxfordjournals.molbev.a003981
    • (2002) Mol Biol Evol , vol.19 , pp. 49-57
    • Yang, Z.1    Swanson, W.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.