-
1
-
-
85040108507
-
Taming the beast-A community teaching material resource for beast 2
-
Barido-Sottani,J. et al. (2017) Taming the BEAST-A community teaching material resource for BEAST 2. Systemat. Biol, 67, 170-174.
-
(2017)
Systemat. Biol
, vol.67
, pp. 170-174
-
-
Barido-Sottani, J.1
-
2
-
-
0035836728
-
Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
-
Beerli,P. and Felsenstein,J. (2001) Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc. Natl. Acad. Sci. USA, 98, 4563-4568.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4563-4568
-
-
Beerli, P.1
Felsenstein, J.2
-
3
-
-
84901305512
-
BEAST 2: A software platform for Bayesian evolutionary analysis
-
Bouckaert,R. et al. (2014) BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Comput. Biol., 10, e1003537.
-
(2014)
PLoS Comput. Biol
, vol.10
, pp. e1003537
-
-
Bouckaert, R.1
-
4
-
-
43349094507
-
The igraph software package for complex network research
-
Csardi,G. and Nepusz,T. (2006) The igraph software package for complex network research. InterJournal Complex Syst., 1695, 1-9.
-
(2006)
InterJournal Complex Syst
, vol.1695
, pp. 1-9
-
-
Csardi, G.1
Nepusz, T.2
-
5
-
-
84940739133
-
New routes to phylogeography: A Bayesian structured coalescent approximation
-
De Maio,N. et al. (2015) New routes to phylogeography: a Bayesian structured coalescent approximation. PLoS Genet., 11, e1005421.
-
(2015)
PLoS Genet
, vol.11
, pp. e1005421
-
-
De Maio, N.1
-
6
-
-
11244269484
-
Using temporally spaced sequences to simultaneously estimate migration rates, mutation rate and population sizes in measurably evolving populations
-
Ewing,G. et al. (2004) Using temporally spaced sequences to simultaneously estimate migration rates, mutation rate and population sizes in measurably evolving populations. Genetics, 168, 2407-2420.
-
(2004)
Genetics
, vol.168
, pp. 2407-2420
-
-
Ewing, G.1
-
7
-
-
0001935493
-
Gene genealogies and the coalescent process
-
Hudson,R.R. (1990) Gene genealogies and the coalescent process. Oxf. Surv. Evol. Biol., 7, 44.
-
(1990)
Oxf. Surv. Evol. Biol
, vol.7
, pp. 44
-
-
Hudson, R.R.1
-
8
-
-
70349675664
-
Bayesian phylogeography finds its roots
-
Lemey,P. et al. (2009) Bayesian phylogeography finds its roots. PLoS Comput. Biol., 5, e1000520.
-
(2009)
PLoS Comput. Biol
, vol.5
, pp. e1000520
-
-
Lemey, P.1
-
9
-
-
84895733259
-
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2
-
Lemey,P. et al. (2014) Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. PLoS Pathogens, 10, e1003932.
-
(2014)
PLoS Pathogens
, vol.10
, pp. e1003932
-
-
Lemey, P.1
-
10
-
-
36749089409
-
Counting labeled transitions in continuous-time Markov models of evolution
-
Minin,V.N. and Suchard,M.A. (2007) Counting labeled transitions in continuous-time Markov models of evolution. J. Math. Biol., 56, 391-412.
-
(2007)
J. Math. Biol
, vol.56
, pp. 391-412
-
-
Minin, V.N.1
Suchard, M.A.2
-
11
-
-
57149091120
-
Fast, accurate and simulation-free stochastic mapping
-
Minin,V.N. and Suchard,M.A. (2008) Fast, accurate and simulation-free stochastic mapping. Philos.Trans. R. Soc. B Biol. Sci., 363, 3985-3995.
-
(2008)
Philos. Trans. R. Soc. B Biol. Sci
, vol.363
, pp. 3985-3995
-
-
Minin, V.N.1
Suchard, M.A.2
-
12
-
-
85044100221
-
The structured coalescent and its approximations
-
Mü ller,N.F. et al. (2017) The structured coalescent and its approximations. Mol. Biol. Evol., 34, 2970-2981.
-
(2017)
Mol. Biol. Evol
, vol.34
, pp. 2970-2981
-
-
Mü Ller, N.F.1
-
13
-
-
0025654424
-
The coalescent and the genealogical process in geographically structured population
-
Notohara,M. (1990) The coalescent and the genealogical process in geographically structured population. J. Math. Biol., 29, 59-75.
-
(1990)
J. Math. Biol
, vol.29
, pp. 59-75
-
-
Notohara, M.1
-
14
-
-
1042304216
-
APE: Analyses of phylogenetics and evolution in R language
-
Paradis,E. et al. (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289-290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
-
16
-
-
41149087694
-
Coda: Convergence diagnosis and output analysis for mcmc
-
Plummer,M. et al. (2006) Coda: convergence diagnosis and output analysis for mcmc. R News, 6, 7-11.
-
(2006)
R News
, vol.6
, pp. 7-11
-
-
Plummer, M.1
-
17
-
-
0035933522
-
The epidemic behavior of the hepatitis c virus
-
Pybus,O.G. et al. (2001) The epidemic behavior of the hepatitis c virus. Science, 292, 2323-2325.
-
(2001)
Science
, vol.292
, pp. 2323-2325
-
-
Pybus, O.G.1
-
18
-
-
84867364321
-
Phytools: An R package for phylogenetic comparative biology (and other things)
-
Revell,L.J. (2012) phytools: an R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.
-
(2012)
Methods Ecol. Evol
, vol.3
, pp. 217-223
-
-
Revell, L.J.1
-
19
-
-
42349094829
-
The global circulation of seasonal influenza A (H3N2) viruses
-
Russell,C.A. et al. (2008) The global circulation of seasonal influenza A (H3N2) viruses. Science, 320, 340-346.
-
(2008)
Science
, vol.320
, pp. 340-346
-
-
Russell, C.A.1
-
20
-
-
84880494351
-
Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods
-
Stadler,T. and Bonhoeffer,S. (2013) Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods. Philos. Trans. R. Soc. B Biol. Sci., 368, 20120198-20120198.
-
(2013)
Philos. Trans. R. Soc. B Biol. Sci
, vol.368
, pp. 20120198
-
-
Stadler, T.1
Bonhoeffer, S.2
-
21
-
-
0024262745
-
The coalescent in two partially isolated diffusion populations
-
Takahata,N. (1988) The coalescent in two partially isolated diffusion populations. Genet. Res., 52, 213-222.
-
(1988)
Genet. Res
, vol.52
, pp. 213-222
-
-
Takahata, N.1
-
22
-
-
84877761231
-
A stochastic simulator of birth-death master equations with application to phylodynamics
-
Vaughan,T.G. and Drummond,A.J. (2013) A stochastic simulator of birth-death master equations with application to phylodynamics. Mol. Biol. Evol., 30, 1480-1493.
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 1480-1493
-
-
Vaughan, T.G.1
Drummond, A.J.2
-
23
-
-
84906255301
-
Efficient Bayesian inference under the structured coalescent
-
Vaughan,T.G. et al. (2014) Efficient Bayesian inference under the structured coalescent. Bioinformatics, 30, 2272-2279.
-
(2014)
Bioinformatics
, vol.30
, pp. 2272-2279
-
-
Vaughan, T.G.1
-
24
-
-
84855467207
-
Complex population dynamics and the coalescent under neutrality
-
Volz,E.M. (2012) Complex population dynamics and the coalescent under neutrality. Genetics, 190, 187-201.
-
(2012)
Genetics
, vol.190
, pp. 187-201
-
-
Volz, E.M.1
|